mRNA_P-littoralis_Contig1282.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1282.17.1
Unique NamemRNA_P-littoralis_Contig1282.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1282.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1282contigP-littoralis_Contig1282:27439..27802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789572.3605518-CDS-P-littoralis_Contig1282:27438..275211680789572.3605518-CDS-P-littoralis_Contig1282:27438..27521Pylaiella littoralis U1_48CDSP-littoralis_Contig1282 27439..27521 +
1680789572.3741105-CDS-P-littoralis_Contig1282:27723..277631680789572.3741105-CDS-P-littoralis_Contig1282:27723..27763Pylaiella littoralis U1_48CDSP-littoralis_Contig1282 27724..27763 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789572.3848033-UTR-P-littoralis_Contig1282:27763..278021680789572.3848033-UTR-P-littoralis_Contig1282:27763..27802Pylaiella littoralis U1_48UTRP-littoralis_Contig1282 27764..27802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1282.17.1prot_P-littoralis_Contig1282.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1282 27439..27763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1282.17.1

>prot_P-littoralis_Contig1282.17.1 ID=prot_P-littoralis_Contig1282.17.1|Name=mRNA_P-littoralis_Contig1282.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=41bp
QCGPGDKLCCFGTRETGGVAEDGCAGRRTHRAPETKLSVW*
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mRNA from alignment at P-littoralis_Contig1282:27439..27802+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1282.17.1 ID=mRNA_P-littoralis_Contig1282.17.1|Name=mRNA_P-littoralis_Contig1282.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=364bp|location=Sequence derived from alignment at P-littoralis_Contig1282:27439..27802+ (Pylaiella littoralis U1_48)
CAGTGTGGTCCTGGAGACAAGCTTTGTTGCTTTGGCACAAGAGAGACAGG
AGGAGTTGCTGAAGATGGCTGTGCTGGCCGCAGGTGCTGTTGCGCCAATC
GAGATGCTGCGTAACCTCTGGCAGACGGAGGTACGCTGATATGCTCTGCG
CGTCGTCCAGAGTCGGAAGGACTGGATGGTTTTCAACAACAAAGCAACAA
TCACAAATGCTCTGTTTTTTTAAGTGAAACCTCTTTTGCTTTGTGTCAAA
CTCGATGCACATCTGACCTGACGATGGTATCGCAGGACACACAGGGCGCC
CGAGACGAAGCTGAGTGTCTGGTGAGCAAGTGTTTGCTGCAAGATATGGG
TGGAGGCGGGCACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1282:27439..27802+

>mRNA_P-littoralis_Contig1282.17.1 ID=mRNA_P-littoralis_Contig1282.17.1|Name=mRNA_P-littoralis_Contig1282.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=123bp|location=Sequence derived from alignment at P-littoralis_Contig1282:27439..27802+ (Pylaiella littoralis U1_48)
CAGTGTGGTCCTGGAGACAAGCTTTGTTGCTTTGGCACAAGAGAGACAGG
AGGAGTTGCTGAAGATGGCTGTGCTGGCCGCAGGACACACAGGGCGCCCG
AGACGAAGCTGAGTGTCTGGTGA
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