mRNA_P-littoralis_Contig1281.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1281.10.1
Unique NamemRNA_P-littoralis_Contig1281.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1281.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1281contigP-littoralis_Contig1281:13047..13553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size264
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789572.0982459-CDS-P-littoralis_Contig1281:13048..131941680789572.0982459-CDS-P-littoralis_Contig1281:13048..13194Pylaiella littoralis U1_48CDSP-littoralis_Contig1281 13049..13194 -
1680789572.1091206-CDS-P-littoralis_Contig1281:13438..135531680789572.1091206-CDS-P-littoralis_Contig1281:13438..13553Pylaiella littoralis U1_48CDSP-littoralis_Contig1281 13439..13553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1281.10.1prot_P-littoralis_Contig1281.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1281 13049..13553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1281.10.1

>prot_P-littoralis_Contig1281.10.1 ID=prot_P-littoralis_Contig1281.10.1|Name=mRNA_P-littoralis_Contig1281.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
AGRTTRLTQSSRNKSSSSRDKEDGRSGDGGNRGREDDAGIPDFFSISLYR
RNERNVGPDAGQLLFVHGAAYKTDKRLGAEFKGTHVL
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mRNA from alignment at P-littoralis_Contig1281:13047..13553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1281.10.1 ID=mRNA_P-littoralis_Contig1281.10.1|Name=mRNA_P-littoralis_Contig1281.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig1281:13047..13553- (Pylaiella littoralis U1_48)
GCAGGGCGGACAACACGGCTGACACAAAGCTCCCGCAACAAAAGCAGCAG
CAGTAGGGACAAGGAGGACGGGCGCAGTGGCGACGGGGGCAATCGAGGTC
GGGAGGATGATGCTGGTGCTATATGGGAGAGGGGGTGGGGGGGGGCAGGG
GGTTTCTCGCTCGTGTGTGTGCGTTAGGTTTAGGAACGTTCATTTTGTTT
CACGGGTGAATGTTGTGCTGCCGTGCCTGGTTATATCATCAAGCAAGGAC
CTGATTTTGTTGTTTCCTTCCCCCTTTTTTTGTTTTGAGACGTTTCTTTA
TCATGTACCTGTAGAGGTTAATGTATTCGGCATGACTATTGTACTCTCTC
GTCTGTCAGGCATACCTGATTTTTTTTCAATAAGTCTTTACAGGAGGAAT
GAAAGAAACGTTGGCCCGGACGCCGGACAACTGCTTTTCGTTCATGGCGC
CGCGTACAAGACGGACAAGCGACTGGGGGCGGAGTTCAAGGGCACGCATG
TTCTCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1281:13047..13553-

>mRNA_P-littoralis_Contig1281.10.1 ID=mRNA_P-littoralis_Contig1281.10.1|Name=mRNA_P-littoralis_Contig1281.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1281:13047..13553- (Pylaiella littoralis U1_48)
GCAGGGCGGACAACACGGCTGACACAAAGCTCCCGCAACAAAAGCAGCAG
CAGTAGGGACAAGGAGGACGGGCGCAGTGGCGACGGGGGCAATCGAGGTC
GGGAGGATGATGCTGGCATACCTGATTTTTTTTCAATAAGTCTTTACAGG
AGGAATGAAAGAAACGTTGGCCCGGACGCCGGACAACTGCTTTTCGTTCA
TGGCGCCGCGTACAAGACGGACAAGCGACTGGGGGCGGAGTTCAAGGGCA
CGCATGTTCTC
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