mRNA_P-littoralis_Contig1281.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1281.2.1
Unique NamemRNA_P-littoralis_Contig1281.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1281.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1281contigP-littoralis_Contig1281:4305..7356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size167
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.9259293-CDS-P-littoralis_Contig1281:4304..43871680789571.9259293-CDS-P-littoralis_Contig1281:4304..4387Pylaiella littoralis U1_48CDSP-littoralis_Contig1281 4305..4387 -
1680789571.936515-CDS-P-littoralis_Contig1281:7273..73431680789571.936515-CDS-P-littoralis_Contig1281:7273..7343Pylaiella littoralis U1_48CDSP-littoralis_Contig1281 7274..7343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.9476502-UTR-P-littoralis_Contig1281:7343..73561680789571.9476502-UTR-P-littoralis_Contig1281:7343..7356Pylaiella littoralis U1_48UTRP-littoralis_Contig1281 7344..7356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1281.2.1prot_P-littoralis_Contig1281.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1281 4305..7343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1281.2.1

>prot_P-littoralis_Contig1281.2.1 ID=prot_P-littoralis_Contig1281.2.1|Name=mRNA_P-littoralis_Contig1281.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=51bp
MKPARANATRRNAPVDKLVTFCLRNRQSCCPLLCALNPENCCEQPDVLCS
N
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mRNA from alignment at P-littoralis_Contig1281:4305..7356-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1281.2.1 ID=mRNA_P-littoralis_Contig1281.2.1|Name=mRNA_P-littoralis_Contig1281.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3052bp|location=Sequence derived from alignment at P-littoralis_Contig1281:4305..7356- (Pylaiella littoralis U1_48)
GGGGGAGGAATTCATGAAGCCGGCACGGGCGAACGCGACGCGAAGGAACG
CTCCCGTCGACAAACTGGTCACCTTCTGTTTGAGTGAGTCCCACCGCCGG
GTGGCAGTAGTGGCGATCAAAGTGTTGATTGTTGTTGTTTTGTGTGGTTG
CTGTTGTTGTTGTTGTTGCTATTGTTTGTATTGTTGTTGTTGATGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTTCGTTGTTGT
TGTGTTCGTTACCGATTTATCACATCGGCTTTTCACCGAAACCAGGCGTG
CACGCGAGAGAAGGCTGTAGCTTTTAGGTGGAGAGCAACGTCAATTTGCG
GAAACGACACCACGCACATTGTTTGTTAACATTAGATACGGCGTGTTTGT
GCGTTGGGCGTATTGACGTGTGGTCGTGGGGTGTGCGTGTGTGCCAGGGA
ATGCACTCACCAAAAGGGTTTGCAGCGCGTCCACTTGTGTCGTTAAGCCT
CATCGGCGACAACAAGCGTCGAGGCTACAGCACTCCGTACCTTCATTCCC
CTTGCTTTCGCGGTGTGATGACAAAATATTTGATTAGTTTGTCACCCCGT
ATACAGATCGTATTGTCCACATAATATACACAGGTATTCGCATGGCATGG
TGTTTTTTTCTTACATTCTTTCTCAGGTACGTCGTCTGCCCCGGCCAATG
TTTTTGCTGTAGACCTGCGTACGACAACACTGTGCAGCTGCGTACTATGA
TACAACACGTGAATACCTGGCCTGCTTTTGATGTCTCTTGAATGGCAACA
CCTACGCACCACGACGTGATATATATTTCCTCTTCCGCTTCGAGTATGTG
TAACGCTTCAGAGAGTCAAGCTTTGCGACAAGCGCCGGGCCAGGGACGTC
AACAAACAGTGTGAAGCAAAGTTGGCAATTCCCACAGAAGGAGCGGTTTA
AGTTGGTACCCCAAGACCGAAAGTCTCGGCGGGTTCTGCCCATATAAATT
AGGAGTCATGGAATGTTGAAAGCGAAGCATATAATCCCAATCACCGCATG
CACTGCGCAGAACGCTTGCTTTTCCAGGCGGACATAATGGTGAATACCAT
CGTTGAGATCTTCTCTGGTTAATCACCTCTCGATTGTGGTCCAAGTTGGC
CATGAGATTGACTAACCCCAAGCCATTAAATATTTTGAAGTGCGAAGCAG
GTGAAAGTTCCGCGATTTCCGATTCGTTTCACTCGTACAAGGACAACAAA
TACGCCATGACACGTTGACGTTTTGTGTTGCCTGCCTGGATACTTTTTAT
ACTGTTGGCAGGTCCTATACTTCCACCACCTACACCAGCCCCGGCCCCTG
CTCCTGCTCCGGCCCCGGCCCAGCCCCTGCGCCAGCCCCGGCACCTGCTC
CGGACCCCGCCCCCGCCCCTGCTCTGTCTCCGGCCCCTACTCCGGCCACC
GCCCCAGTTCCTGCCCCTGCTCCGGACCCGGCCCCTACCCCAACCCCGGC
CCTACCTCCGGTCGCTGCTCAGGCCTCCACACCCACCCCGGCTCCGACCT
CTGCCTCTGCCTCTGCCTCTGCTCCGGTTCTGGCCCCGGCCTCTATCCCA
GCTCCGGCCCTAGCTCCTGCCCTGCCCCTGCCCCTGCCCCGGCTCCTGCT
CTTGTTCAGGCCCCGGCCCTTGCTCCAGCTCCGGCCCCAGCTCCTGCCCC
TACTCCGGCCCCTGCTCCTGTTCAAGCCCCGACCCCTTCCCTGGCCCAGC
TCCGGCCCCTGCTCTTGTTCAGGCCCCTGCCCCTGCCCCTTCCCTGGCCC
CTGGCCCCTGGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCGGCCC
CTTACTGCCCCTGCCCCTGCTCGTGCCCCTGCCCCTGCCCCTGCTCCGGC
CCCTACACCCGCGCCCGCTCCTGCTCCTATTCCTGTTCCGGCCCCTGCTT
CCGCTCCGGCCCCCGCCCCTGCATCAGCTCCGTTCCCAACGCCGGACCCC
GCCCAGGCTCCAGATCCGGCCCCGGCCCCGGCCCTGCCCCTGCCCCTGCC
TCTGCCTCTGCCCCTGCCCCTGCCCCGGCCCCGGCCCCTACACCCGCGCC
CGCTCCTGCTCCTGTTCCTGTTCCGGCCCCTGCTTCCGCTCCGGCCCCCG
CCCCTGCCTTAGCTCCGTTCCCAACGCCGGGCCCCGCCCAAGCTCCGGAT
TCGGCCCCGGCCCCTGTCCTGCCTCTGCCCCTAACCCTAAGTCATTTGTG
GCGTGGCAATATCAAGTTCAGTTGCCTTGTGCGTTTGGAAGACGATGTTT
GCCGCCGAAGCGGTCAGCGTGTTTATATCTGTTCACACCGAAAATGAATG
AAAATATGACATCTGTTTCAACCCGCAATGTGATTGCCGAATCGCCGGTG
TTGAAAACCGTCGTATCGAACTGGCGAGAAAATATGCCTGTGGCAGGGCA
CGTTGCTGGGTGTGCACGGTGCTTATACTGCCATGAAGACACATGTGCAG
TTGTTAACGTGTGCGTCATGCCCTACACCTTCCCTGTGCGATGCGCCTCG
ACCATTTTAGATGTTCGTCACTTCAATCTAGACTGGTTCGACCGTCATTT
TCTCCAGCTACGATCGACGCGAACAATTAAGACACCAGTAATCCATCTGT
CCCTGAGTCTTGACGACAACTTTGCTGAATCTGGCCCCGTTCCTTACCGC
GTTAGCTGACGCGAGAATCCACGGCATGCGATTAACCCGGGCCGCCTCCG
ACTTCATTTAGAGGAGAGTTCGACGAAGGAGGCTTCCCTCGTCGTGGTAC
AGTACAGTCAATTGTAGAATTTCGAAAAGTATCTCGAATGTTATGGTGGT
CATCACAAAAACAAAACATCGTGATCTTCCTTCTGTGTGACCCTGGCCGA
TGCACCCTTCATACTAAAATGTGTACTTGAATCTTCCCTGTATCGTTATC
GGCGCATGGTTTTTTACAGGAAACAGGCAGTCGTGCTGCCCGCTGCTTTG
CGCCCTGAATCCTGAGAACTGCTGCGAACAGCCGGACGTGCTCTGCAGTA
AT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1281:4305..7356-

>mRNA_P-littoralis_Contig1281.2.1 ID=mRNA_P-littoralis_Contig1281.2.1|Name=mRNA_P-littoralis_Contig1281.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=153bp|location=Sequence derived from alignment at P-littoralis_Contig1281:4305..7356- (Pylaiella littoralis U1_48)
ATGAAGCCGGCACGGGCGAACGCGACGCGAAGGAACGCTCCCGTCGACAA
ACTGGTCACCTTCTGTTTGAGAAACAGGCAGTCGTGCTGCCCGCTGCTTT
GCGCCCTGAATCCTGAGAACTGCTGCGAACAGCCGGACGTGCTCTGCAGT
AAT
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