mRNA_P-littoralis_Contig1280.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1280.18.1
Unique NamemRNA_P-littoralis_Contig1280.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1280.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1280contigP-littoralis_Contig1280:33194..34107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size914
Hectar predicted targeting categorysignal peptide
Exons1
Cds size603
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.782585-UTR-P-littoralis_Contig1280:33193..333751680789571.782585-UTR-P-littoralis_Contig1280:33193..33375Pylaiella littoralis U1_48UTRP-littoralis_Contig1280 33194..33375 -
1680789571.8045044-UTR-P-littoralis_Contig1280:33978..341071680789571.8045044-UTR-P-littoralis_Contig1280:33978..34107Pylaiella littoralis U1_48UTRP-littoralis_Contig1280 33979..34107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.792816-CDS-P-littoralis_Contig1280:33375..339781680789571.792816-CDS-P-littoralis_Contig1280:33375..33978Pylaiella littoralis U1_48CDSP-littoralis_Contig1280 33376..33978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1280.18.1prot_P-littoralis_Contig1280.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1280 33376..33978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1280.18.1

>prot_P-littoralis_Contig1280.18.1 ID=prot_P-littoralis_Contig1280.18.1|Name=mRNA_P-littoralis_Contig1280.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=201bp
MWHVFPPICASVFFFSLDGLSQSRHNGFIGRVKGEYMFRSLWAKFDSVAP
LDRHGKLGVQSHSTVCVSRRRACMATSRINSGMIGYSRREQTLSKETVSS
SALRMKETVNRRQEGCVSYHVILYYTAFYVACSSFAHPVLRSCCSSRSSG
AIRSLALALIELGPAWGCASSHDMMISHDTHEAHIIRAHTSYISLAQQLQ
*
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mRNA from alignment at P-littoralis_Contig1280:33194..34107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1280.18.1 ID=mRNA_P-littoralis_Contig1280.18.1|Name=mRNA_P-littoralis_Contig1280.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=914bp|location=Sequence derived from alignment at P-littoralis_Contig1280:33194..34107- (Pylaiella littoralis U1_48)
TTGCTCGGTGCTCGCAGGGCAACGGCAAAGAACCAGCATGGCGGGGGAAG
AGAGGGCTTCTTCCAAGCTCCAGTCTTTGAGGTGATTCCCTGTCGATGCT
CCTGCGAAACCGTCTGACTGGGGCGCGATATGTGGCACGTTTTCCCACCA
ATTTGTGCTTCTGTTTTTTTCTTTTCGCTTGACGGACTCTCTCAAAGTCG
ACACAACGGGTTCATCGGGCGTGTAAAAGGCGAATACATGTTCCGCTCCC
TGTGGGCAAAATTTGATTCGGTTGCCCCACTTGATAGGCATGGGAAACTC
GGTGTCCAGTCGCACTCAACTGTTTGCGTTTCTAGACGCCGGGCGTGCAT
GGCAACGTCACGGATCAACAGCGGTATGATAGGCTACAGCAGGAGAGAGC
AGACTCTGTCTAAAGAAACAGTTTCTTCATCTGCTTTGCGCATGAAGGAA
ACCGTTAATCGTCGTCAAGAGGGTTGCGTGTCGTATCATGTCATATTATA
TTATACTGCTTTCTATGTTGCATGCAGCAGTTTTGCACATCCGGTGTTGC
GCTCGTGCTGCAGCAGTCGTAGTAGCGGAGCCATTCGCTCTCTTGCGCTC
GCGTTAATTGAACTCGGGCCCGCTTGGGGCTGTGCTTCTTCTCACGACAT
GATGATATCACATGATACACACGAAGCACATATTATACGTGCCCATACTT
CATACATATCACTAGCACAGCAGCTGCAGTAGGCTGCGCCTACAGGTTTC
CTCGGATCAGACTCTGCTGTATGACTGAGTGAGATACCTGCTGTATAACT
GGAGTGTGATACGCGGTACTTTTTTGTCGTTTCTTCGGTTACGGCTCAAA
CGTTGAAAACATATCGTAGCATAATTGCGCTAAACGGCACGCCCTTTGAT
CCGAAGTATCACAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1280:33194..34107-

>mRNA_P-littoralis_Contig1280.18.1 ID=mRNA_P-littoralis_Contig1280.18.1|Name=mRNA_P-littoralis_Contig1280.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig1280:33194..34107- (Pylaiella littoralis U1_48)
ATGTGGCACGTTTTCCCACCAATTTGTGCTTCTGTTTTTTTCTTTTCGCT
TGACGGACTCTCTCAAAGTCGACACAACGGGTTCATCGGGCGTGTAAAAG
GCGAATACATGTTCCGCTCCCTGTGGGCAAAATTTGATTCGGTTGCCCCA
CTTGATAGGCATGGGAAACTCGGTGTCCAGTCGCACTCAACTGTTTGCGT
TTCTAGACGCCGGGCGTGCATGGCAACGTCACGGATCAACAGCGGTATGA
TAGGCTACAGCAGGAGAGAGCAGACTCTGTCTAAAGAAACAGTTTCTTCA
TCTGCTTTGCGCATGAAGGAAACCGTTAATCGTCGTCAAGAGGGTTGCGT
GTCGTATCATGTCATATTATATTATACTGCTTTCTATGTTGCATGCAGCA
GTTTTGCACATCCGGTGTTGCGCTCGTGCTGCAGCAGTCGTAGTAGCGGA
GCCATTCGCTCTCTTGCGCTCGCGTTAATTGAACTCGGGCCCGCTTGGGG
CTGTGCTTCTTCTCACGACATGATGATATCACATGATACACACGAAGCAC
ATATTATACGTGCCCATACTTCATACATATCACTAGCACAGCAGCTGCAG
TAG
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