mRNA_P-littoralis_Contig1280.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1280.2.1
Unique NamemRNA_P-littoralis_Contig1280.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1280.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1280contigP-littoralis_Contig1280:7769..12436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size360
Hectar predicted targeting categoryother localisation
Exons4
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.7170393-CDS-P-littoralis_Contig1280:7768..79091680789571.7170393-CDS-P-littoralis_Contig1280:7768..7909Pylaiella littoralis U1_48CDSP-littoralis_Contig1280 7769..7909 +
1680789571.7278244-CDS-P-littoralis_Contig1280:8637..87451680789571.7278244-CDS-P-littoralis_Contig1280:8637..8745Pylaiella littoralis U1_48CDSP-littoralis_Contig1280 8638..8745 +
1680789571.7365465-CDS-P-littoralis_Contig1280:9033..91101680789571.7365465-CDS-P-littoralis_Contig1280:9033..9110Pylaiella littoralis U1_48CDSP-littoralis_Contig1280 9034..9110 +
1680789571.7486932-CDS-P-littoralis_Contig1280:12403..124341680789571.7486932-CDS-P-littoralis_Contig1280:12403..12434Pylaiella littoralis U1_48CDSP-littoralis_Contig1280 12404..12434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1280.2.1prot_P-littoralis_Contig1280.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1280 7769..12434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1280.2.1

>prot_P-littoralis_Contig1280.2.1 ID=prot_P-littoralis_Contig1280.2.1|Name=mRNA_P-littoralis_Contig1280.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
CLSSSVEKLLAKPISSHLKKGFMQQIQDKAAEKYSATTDGLIKNAAVAIT
SAVGSLRGATTRSTTINKQLEAAASRAEKVMDKIPSVTSAMGETGGTTAT
SQLGLAGDVVPHTINVHRS
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mRNA from alignment at P-littoralis_Contig1280:7769..12436+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1280.2.1 ID=mRNA_P-littoralis_Contig1280.2.1|Name=mRNA_P-littoralis_Contig1280.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4668bp|location=Sequence derived from alignment at P-littoralis_Contig1280:7769..12436+ (Pylaiella littoralis U1_48)
TGCCTGTCGAGCAGCGTAGAAAAGTTGCTGGCGAAGCCGATATCGAGCCA
CTTGAAGAAAGGATTCATGCAGCAGATTCAAGACAAGGCGGCCGAAAAGT
ACTCGGCCACGACAGACGGGCTCATCAAAAATGCTGCGGTGGTGAGACGA
TGTAGTCTGGACTTTTTCAACTTTAAAACTTACGAACACATCAGTGTGTT
CGCCTCTCGCCAGACGAGGATCTGAAGTAGTAGATATTGCAGCGAACACA
AATTATAAGGTACATCTATCAGTGTTTCTATAACTCATCAGACACAGTAC
CGTTGCAGCTCCCCTGAGGGCGTCAGGCAAAGAAGACAATTTGGTGGTCG
CCTTGTGCGACACACGTTACGTCATGTGTTGAGTGTTTTCAGTCTATACT
GGTGCTGTTTGCATCATCCTCGGCATAGTAGTTGTGGTGTTTGTTTTGTG
CTTATGCCACTCTTTGGATTAGATTTTGCGTCCCTGCATACAACAACACA
GCAGTTCTTCTTCCGAAAATATATGATTATACCCATCCATGTGAATACTA
CTTCCGGTTTGTTGCCATTTGTAAGGGATAGAGTGTAAAAGTGTGACGGT
GAAATTCACGCGTTTGTCAGTGTACTAGTATTATCGCTCATCACTGCTGT
GATCTCGTGATGAAGTTTCATTACCGGTTGAGATAGGCATCCGCACTGAT
TCATTTCGTGCCTGAAGTAGGGGTACGCGCTTGCAGATTCAGTCATCTTC
TTTCGGTGCAAGTACAAATGTCTTCGCAGTACAATCGAACCGTTGCACTG
GCGTTTTGATCACTGATGCCGATTTCCCGATCACCTTTTATGGACCCGGC
ATATATTTCTACGACGCAGGCAATTACCTCTGCTGTAGGTTCTCTCCGCG
GCGCGACGACGAGATCCACTACTATCAACAAGCAACTGGAAGCGGCAGCT
TCTCGTGCGGAGAAAGTTATGGACAAGGTGAACGTTTAAACCGCGTCTAT
TTCAATCGTGACGTCGCCTCTTTCTGGCACGTGTGATGAAGAAAAGCAAG
CATGCCTACTCATATTACCAGATGGCCGGCAAGTATAGGAAGGAAGTCAT
CTTTTTTTTGAAACACGGTTCGGTTTACTGCTCTAGTCGTGCCATCAAGC
GCCGGCGTGGGAGGGTTGTTTCTGTGCTCCTCTGTCGACATATGCCATGT
GCGACGAACCGCTAATTCTAATCGGGACGTTTCCTCCCGTTGTGTGTCTT
CTATCGTTTCGGAAGATACCTTCTGTGACTTCTGCTATGGGAGAGACCGG
CGGGACAACAGCCACATCGCAGCTCGGCCTTGCCGGCGATGTGTCTGTTA
GTTGGATGGACTTAACCACTAGCGCGCTCAGTCAGCGCTGACTAAGTGCT
CTAGTGGTTAAGTCCGTCCAACTAACAAAGATATGCATTGGGAGTCCGAC
TCCCGTTTTCCTCGCCAGGCAGTGATCTCCGAGGGCTCACCCCCCTCGCC
AGCGCGACCTCGGAGCCTACTATAGTGGGTGTGGGACACCTTGCCCGCCA
TCCAACTCGCGCACTTTTAGATCCGAGTACACGGATAAAGCCCCAAGCTT
TATTTCTCATAAAAAGGCGCTACACCTGACGAGGATCGAACCCCCGGCGT
CTCTTTTGTTAGTTGGATCGGCTTAATCACTAGAGCACTTAGTCAGCGCT
GACTGAGCGCGCTAGCGCTTAAGTCCATCCAACTAACAAAAGATATGCAT
TGGGAGTCCGACTCCCGTTTTCCTCGCCAGGCAGTGATCTCCGGGGGCTC
ACCCCCTCGCCAGCGCGACCTCCGAGCCTACTCTAGTGGGTGTGGGACAC
CCTGCCCGCCATCCAACTCGCGCACCTTTAGATCCGAGTACACGGACAAA
GCCCCAAGCTTTATTTCTCATAAAAAGGCGCTACACCTGACGAGGACCAA
ACCCCCGGCGTATCTTTTGTGGGTTAGATGGACTTAACCACTAGAGCACT
CAGTCAGCGTTACTGCATTCAAGCACCGAGCCAGTAGTTTCAAGCGAGTA
AATGTTACGCACGTCTCCCGAAGCAAATAGGCGCAGGGTGAGTAATCCAG
CGTGCTGGCGTATATTTTTCAGTTTTAGCTTGACCTGCTCGCCTTGGGAG
TGCGGCCGTTGGAATCCTCCGGGATAGCGACGGTTTTTTATTCGTCGGAT
TTTTAGACTTGGGGTTTTTGATCGGCGGGTCCGGTTTTCCCCTTGCACCG
TCTTGGCGTTTTAGTATGATCCAGGGGAAGCATATCCCCAAAATTGATGG
TTTTCCACTTGCGTGAAGAACCAGGAAGGGTGTTCGTCGTCCAAGGTATT
CTTGCCGGAGGACGAACATATTTGGATCTGCTTTGACGGTTTCATGTTTG
GACCAATGAGGTGCTCCCCTTTGTGTTTGGTGTTGCACCGCATTTATTGT
TGGCTTGGGCTAGCTTGGGATGTGTGATGATGCCTGGAGCCTAGCCCACT
CCTCTTTCTTTCTGTTTCTGTGTCCTAATAAAACGTGTTAAACAAGACTC
ATCATAGCTTCTCTGCTTGAGGCAGTGGAGCACCGACTAGAAGCATCGAA
CACACTAGTGTTTTCCTTCGAAGGAGCTTCGGTCAACATGCCGGGTAGTG
ACGCTGCCAGGGGCGGCTCAGAAGGAGCAAACCCCGACAGCGACGGAATA
CAGGAACTGCGACTGAGAGTTGCAGACACACAGAGTGATATTCAGCAGCT
AAAAGAGATGATGAAGCTGATGATGGCCAACCTAGGAGGGGGAGGTCAAC
AAGGAGAGGAGTCAGGCGGCTCCGGCGGGAGAGTCGCCGACAACAACAGC
AGCGGCGCCAGGAGGGCGCTGCTGGAGGAGGCAGCAGCGGGCACTGGTCG
AAGTGCTACTGCAGCCGCAAGAACAACAGGCGGAGTTGGGGCATACCAGG
GGAGCGAGTGGTCCCAGGAGTCACAACCTGCTGAAGATTCGGGCAGGAGG
CCGGCGGTTCCCGCCGGCGTGGGCCCAATCACCAACACGGTGGAGCGACG
CGGCGAAGCgGGGGATTCATATCCCACAGGTATAGCCGCAGCTTTTGAGA
GTAGGGGTAGCCATGACAAGCAACCTCGAGTGAACCCACCTGTACTGAGA
GCTGAGAAGGGGGAGGCTTTCCACTATTCAAGCATGAATTCCTCCTCAAG
GCGAATCACTTAGATGTATCACAGCACTTCGTGGGAGAGGGGACGCGTGC
GGTTCCAGTAGGAGACCCGGCCAAACGCAAGGATGACCTGTTGAGAGAGG
GTTTCACGGCGGGAGAGATAAGAGAGGCCCGTCTTGCATGGACGTTTCTG
GACGAATCGCTGAAAAAGGAGGAAGACAGGGCGGTGCTTCAGAGATGCAA
GTCACCAAGAGAAGCGTTCAACTACCTCGAGCAGTTCTACGACCCAGAGA
GTGAGATAGCCACGCAGAGGCTGTACGAAAAGTTCCACCAATACAAAATT
CCAGCTCACGGGAACCCGGTTGCTGCATTCCATGAGCTAGAAGACCTCAA
CAACAGGATGCAGGAGAAAGGCCTACCACGAGTTCCTGAACCCATGGTAC
ACGCTCGTTTCGTCTCCGCCTTGCCTGACGAGTATGCCCACACGAAGGAG
ACCCTGCAGTCCATGAAGGACCGAACCATGGAGGAGATCATTCGGAGGGT
TGGAACGAGATATTCCAACATCCCCCAGAAGAGCGGGTCGCAGCGGTCGT
CCCGGCCGCCCGAGCAGGCATTCTATTCGAGTGAAAAAGGCGGGCGAGGC
GGTTCGCTACGGGGACGTGGGGGCGGCCGCGGCAGGGGCCAAAACCGTAG
CCGCAGCAGCGGTGATCGCAGTCACGGCGGCGGTAGTGGTGGCGGCGGCG
GCAGCAGCAGCGGCGGCGGCAGTAACAGTAACAGCGGCAACTCCGGTGGG
GGTAGAGGTAGTAGTAGCGGCGGCAGCGGCGGTACTCCTGGCGGAGGTGG
GGGCACCAGCGGCAGCGGTGGTAGCAGTAGAAGCTTTCGCCCTCCCTCTC
GGTGCTGGCGCTGCAACCACCAGGGCCATCACCGGGTGACCTGCACCACC
AAGCCGAGCGACTTCCTCGTCATGTGCACCAAGTGCAGCGGCTTCGGCCA
CAAGACGGATGACTGCATCTCCGAACAGGCAGTGCTGGTGGTGGAGGGTG
CAGAATCTGATGAAGACACCGCCGTCGATGCCCTGGCGTTCGCGGCAGCG
GATAATTCAGGCAAGTACAGTGTGATGAACGGTAGTGATGTTGGGGGTGG
GGCGCTGGGCAAGAAGGTCGTGTCGTTCATCGCTGATAGCGCGGCAACAT
GTAACATGACGCCGGACGCCGACGGTCTTACTAACTACCGAGAGAGTAGT
CGACCTTTGGGTCTCGCAGGAGGGGGGGAGATTTCTATCGTAGGGTACGG
TGACCTCACGGTAAATCTCCGTACCGACAACGGGTGGGTTAGAGTTGAAC
TACACGATGTAGCCCACGCCCCCCTCTTGCACTACCACCTAATATCTTTT
GTTAGTTGGATGGAGTTCACCACTAGCGCGCTCAGTCAGCGGCGCTGGCT
GAGTGCTCTAGTGGTTAAGTCCATCTAACCGACAGTGTCCCCCACACCAT
CAATGTCCATAGATCCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1280:7769..12436+

>mRNA_P-littoralis_Contig1280.2.1 ID=mRNA_P-littoralis_Contig1280.2.1|Name=mRNA_P-littoralis_Contig1280.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1280:7769..12436+ (Pylaiella littoralis U1_48)
TGCCTGTCGAGCAGCGTAGAAAAGTTGCTGGCGAAGCCGATATCGAGCCA
CTTGAAGAAAGGATTCATGCAGCAGATTCAAGACAAGGCGGCCGAAAAGT
ACTCGGCCACGACAGACGGGCTCATCAAAAATGCTGCGGTGGCAATTACC
TCTGCTGTAGGTTCTCTCCGCGGCGCGACGACGAGATCCACTACTATCAA
CAAGCAACTGGAAGCGGCAGCTTCTCGTGCGGAGAAAGTTATGGACAAGA
TACCTTCTGTGACTTCTGCTATGGGAGAGACCGGCGGGACAACAGCCACA
TCGCAGCTCGGCCTTGCCGGCGATGTTGTCCCCCACACCATCAATGTCCA
TAGATCC
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