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Homology
BLAST of mRNA_P-littoralis_Contig128.74.2 vs. uniprot
Match: D7FVD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD4_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.550e-53 Identity = 141/328 (42.99%), Postives = 172/328 (52.44%), Query Frame = 2
Query: 1907 IADEAHTAEEVEKDAWRQGETKRVEEMVRQEYATLQHTTNGRQSLSPTSEEGSVQ-IGHMLPRFPGQWKSRGYDSQRELKALRKFSTEHPALPPSALGGPTLHTLEHAGAPAEAVAHQMADILRDVEAKVQRIEALEIDGSRVEEEREAQPPNDVPITATKSPPGTIAPSHIVGDKHHTANDVDASCTKDAGVYESDKLLTPALDQSKSAAELDDTLTTGGV-MDMGALPLYTPNISCGEFSERLLVPSEAQTFPDMVQQSWLNGQATLQEAGRCIGAELEVTMLCMQKRLGKQPI---EQGVGSEGGKEESSADDALRKYTEEPHEK 2875
+A EA TAEE EKDAWRQ ETKRVE+MVR+E+ LQ N R T E V+ +M F G+ R Y L R T HPALPPSALG + LE+A EAV HQMA +LR VE KV++IEAL+IDG +++ + P+ I SPPG DA TKD + L A D+ A + D TL G ++G P Y P + +FS L SEA+ P++ Q W TLQE RCIGAELEV MLCMQKRLGKQPI EQ E KE+ + D K E+P EK
Sbjct: 43 VAKEALTAEEAEKDAWRQAETKRVEDMVREEHVMLQDAANRRDDTVSTMETIGVEDADNMFEGFVGRISPRQY----VLDGDRALPTRHPALPPSALGPRKFYFLENADVSMEAVTHQMAGVLRTVEEKVKKIEALQIDGPSGQQKGGSGNPSGALIAPPVSPPGITDSXXXXXXXXXXXXXGDADNTKDNNFDRNGNPLDSAGDRGHLAVKSDGTLMAEGADTEIGPAPRYAPGTTYNDFSRHLFASSEAEELPNVAAQPWCT--TTLQETRRCIGAELEVAMLCMQKRLGKQPIVYGEQDATGELEKEQGTEDSVASKPAEQPPEK 364
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 4239 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Cds size | 2079 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789571.4619555-UTR-P-littoralis_Contig128:440962..442589 | 1680789571.4619555-UTR-P-littoralis_Contig128:440962..442589 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig128 440963..442589 + |
| 1680789571.534923-UTR-P-littoralis_Contig128:445824..446357 | 1680789571.534923-UTR-P-littoralis_Contig128:445824..446357 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig128 445825..446357 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789571.4764855-CDS-P-littoralis_Contig128:442589..442776 | 1680789571.4764855-CDS-P-littoralis_Contig128:442589..442776 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig128 442590..442776 + |
| 1680789571.4870753-CDS-P-littoralis_Contig128:443374..443547 | 1680789571.4870753-CDS-P-littoralis_Contig128:443374..443547 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig128 443375..443547 + |
| 1680789571.501658-CDS-P-littoralis_Contig128:443667..443985 | 1680789571.501658-CDS-P-littoralis_Contig128:443667..443985 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig128 443668..443985 + |
| 1680789571.5137477-CDS-P-littoralis_Contig128:444089..444563 | 1680789571.5137477-CDS-P-littoralis_Contig128:444089..444563 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig128 444090..444563 + |
| 1680789571.5246472-CDS-P-littoralis_Contig128:444897..445824 | 1680789571.5246472-CDS-P-littoralis_Contig128:444897..445824 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig128 444898..445824 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig128.74.2 >prot_P-littoralis_Contig128.74.2 ID=prot_P-littoralis_Contig128.74.2|Name=mRNA_P-littoralis_Contig128.74.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=693bp
MCFQDDLGRWGEQLNLVPNEDATRATVSSAADVTSDLDGVLKQLRSGMIH EVLIESPGQLTPRVNLPVNLAQIAHDLDAKLLEFTLMAKAREQIADEAHT AEEVEKDAWRQGETKRVEEMVRQEYATLQHTTNGRQSLSPTSEEGSVQIG HMLPRFPGQWKSRGYDSQRELKALRKFSTEHPALPPSALGGPTLHTLEHA GAPAEAVAHQMADILRDVEAKVQRIEALEIDGSRVEEEREAQPPNDVPIT ATKSPPGTIAPSHIVGDKHHTANDVDASCTKDAGVYESDKLLTPALDQSK SAAELDDTLTTGGVMDMGALPLYTPNISCGEFSERLLVPSEAQTFPDMVQ QSWLNGQATLQEAGRCIGAELEVTMLCMQKRLGKQPIEQGVGSEGGKEES SADDALRKYTEEPHEKVADTMDVGGPLEASLQESLMVLADDMATCRERET HEEVDRELGLSFKDVPDRWCDRDCANNRLHFGGQMQRDVVKPISEIGEGM AGYDPPSTLYQYSSNDDVWAISVDGSLRPNTGLRSGKDMAGASPLNKSPA LAPSGGTTFQPAPPAPLPYPILQSKANQSRLPTGSSMFLEKNAPIRDLGE SGGKMKHLSMKGHLQRNDVDGGGFAVARARQRLHSFRTARKGTSTDINVI RRPENVVPRQLPVDQRMVPPSRDDSKLVLGRLREMRHSLHAT* back to topmRNA from alignment at P-littoralis_Contig128:440963..446357+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig128.74.2 ID=mRNA_P-littoralis_Contig128.74.2|Name=mRNA_P-littoralis_Contig128.74.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5395bp|location=Sequence derived from alignment at P-littoralis_Contig128:440963..446357+ (Pylaiella littoralis U1_48) AAACCTTTGGTGTCGGTCCAGATTGGCCGCAGTTTGCGGACTTTTGAGCC
ACTGCTGTAGCCTTCGATACCTCAGCCCTAGCAGCATGTCTGAACGTGCC
GATACACAAGTAGCTGCTCCATGGTGTCCTCTACTGATAGAAGTACGTAG
TGTAATCTGAGCCTCATCAAAATAGGCTGCTTTGACTTGATTTTAGAGTT
GCGGGAAAAATGATCTTGATAAATTTTTGATGAGGAAGATTGGAGGTCGA
CGTGTGATATGCATGTAAAGAGAAGGTCCCCTGCCGCCGCTGCGTGCGAT
AGCCAACAGTTTTGCTCTTTCTCGACGCCGTCTTACAGGTGTGAGGTACC
CCGCGTGTAATCGTCAGGGCCCCTGCGCTGTTTTTCCAAATCTGTGCCTG
CATCCTAAAGGCCTTTTCTGTGTTTAATCTTCCTCTACCCATTCGTACCA
TAACCAACAACGAAACCCCCCACGACACGATTAGCTCCACGGCACACAGA
TCCCCTCCGCTTTCTTGTACTTGGCACCAGGCAGAAGGTGGCATGGTGTT
TTTGGGCAATTCCTGCCCCCCGACGACTACAGAATTAGATGCACACCAAT
GTAGGGCCCATGTTATTGTTCCATTCCCCTCTGTACATCATTGCGAAAAG
AATTGCGAAAAAGAAGTAGCGAAAATGAACCACGGCGCGATTTGCAACGT
TAAGCTAGGTAAAGACTGCGCTCCTGTAACTTCGAAGTTAGTTTCGTCAG
TTTCGAGTTGCGGTTATTTTCTAGGAACGGAGGTGGTCGAATAGGCCGAA
ATATTTGTAGTCCCAATTACACAATACCACATCAAGAGCAGCAACAACAG
CGCGTTCCACAACAACACGATATCAGCCACGAAATACTTAATTGGCGCTT
GTGCCGGCGGTTCACATCCAAGACCATAGGAGTGCTGACGCAACCTCCGT
GTTGGATAGGAAGATTTGCAACAGTATTTGTGCTCCCGCCATGGTGAACA
AACGCCAACAAAACTCAACAAATACATCAGCCGCGATTGGTGGAAATAAC
TCTATATGCACTACGTTTTGGACCACGAAGTCACGGGTGCTATTGGCTGC
TCCATTCTAACGAGCAGGACTTCCGTGTACTCTCTCGCCCCCACACCGCG
CAGTGCGGTGGACAAGCTCATGTCCGAAGACATCCAGAGGTTCATGGCAA
CGGGGGCGGATAGGTCGGATCGCGCCGCAAAGCCTCCGCGTGTGTTTTCG
TCCCCAAGTCTGGCTCCAACGTCTCACAAGCACTCTCATGCGCTGATGGA
AAGCTACCCTAGGAAGAGCTTGGTTTTTCCCTCCGGTCGTGAAACACAAG
CGCTTGGAGGCTTTAAGACCGCGCGTGACGAAGAAAATCAAATAAAACCT
TATCTACGGGACTTGGCGCTTGGTCCCCTAACGTATACGGGAAGCGCCGA
GCTTCGAGGAGGAACACCGCCGATCTCGTCACAACCGGTGATGCCTGTAC
GGCAATGAAAATAAGACTTGTAGTTCTAACGAGGGATACAAAGGAAAAAA
TTGTCGTTCGGTAGTCCACATGTCCACAATCCTCGTGTAGTACCCGATGT
GTATCGAACGTACTGTGGATTCTGAACATGTGCTTTCAGGACGATTTGGG
CAGATGGGGGGAGCAGCTGAACCTGGTACCAAACGAGGATGCGACAAGAG
CAACCGTTTCCAGCGCTGCCGACGTTACTTCAGACCTTGACGGCGTGCTC
AAACAGCTGCGCAGCGGAATGATCCACGAAGTGCTCATCGAGTCTCCTGG
ACAGCTGACACCACGTACGTGTGACAGCTGCTTAACCCAGTCATGATTCG
AAGAGCCGGTGTCCACATGTTCAAAATGAACACTGAGGAAACTGAGCGTC
CGACTGAACATCACAAAGGGTATAACATAAACAAATTTCGAGTTACGCGA
GCTGTATACTGGTTTTAACGCCGTTGACTTGAAAAATAATACTCCGTACT
AGCGAGTGCACAGCCGTCAGGGGCATATTGCCGCGAGGCGGTGGCGTCTA
GAGAAATTGGGAATTCTGCTTTCAATAGCTTCTGCAGTATTTTGGTAGGT
AGACACGTGCCGAGTGGTCACATACGTGTTGACAGAAAACCTATTCGGAC
GCATGTATTCTTATTTTTGTGCCAGGACACATGGCGCAGAGGCGAACCAC
TGCGATTGTCACTTCTAGGGAACCGCGACTAGTGGAGAGCACGCACACAG
ATATCGACGTTTCGTATTTCCAAAAGCCACGCGAATGAATTGTGTCGACG
TTCGGTCGAAAAAGAGACAACGTATGTCTTGTTCTAATAGTGGCGTCAAA
GAATTGGATCCCGCTCGTTTCGACCGAGATCGGTTTGCTTCCCTCCTTGC
CAACCCTCCTAGGAGTAAACCTGCCTGTAAACCTTGCTCAAATCGCCCAT
GACTTGGACGCGAAGCTACTGGAATTCACTCTGATGGCGAAAGCGCGAGA
GCAGATTGCTGACGAGGCCCACACGGCAGAAGAGGTCGAAAAGGATGCGT
GGAGACAGGGAGAGACCAAGCGGGTAGAAGAAATGGTAAGAGCCCTGTCT
GAAATTCTGTCGATAACCCCCCTCCTCATCGGTGCGGTGTACACGCTGAT
CACTCGAGGTTCCTTTCCTTGCTGGCTGTGCTCCTCGCTTTCATATCATT
GGCAGGTGAGGCAAGAATATGCGACCCTTCAGCACACGACGAATGGGCGG
CAATCTTTATCGCCAACCTCAGAAGAAGGATCAGTGCAAATCGGTCATAT
GCTCCCACGGTTTCCGGGACAATGGAAGTCGCGGGGGTATGATTCCCAAC
GGGAGTTAAAGGCGCTCCGAAAATTTTCCACCGAACATCCTGCCCTCCCG
CCTAGCGCCTTAGGGGGGCCGACCTTGCATACTTTAGAGCACGCTGGTGC
GCCGGCGGAAGCTGTGGCTCATCAGATGGCCGATATTCTTCGTGATGTGG
AGGCCAAGGTTCAGCGAATCGAGGTAAGCTTGCAAGGATCTCTCTTCAGT
TTCGTACACTCCCGTAAAACACGCATCGAGAGTAATCGGGGGCAGCACCT
CTTATATGCGCCCATCTCTTCCGGCAGGCTCTTGAAATTGACGGGTCTCG
GGTGGAAGAGGAACGAGAAGCTCAACCCCCCAACGATGTCCCCATCACGG
CTACAAAGTCGCCGCCAGGAACAATTGCCCCGTCGCATATTGTTGGAGAC
AAACACCACACAGCGAACGATGTGGATGCCAGCTGCACGAAGGACGCCGG
CGTGTATGAAAGCGACAAGCTCTTGACCCCGGCACTCGATCAAAGCAAAT
CGGCCGCGGAATTGGATGACACCCTCACGACAGGAGGTGTTATGGATATG
GGCGCATTACCCCTGTATACTCCGAACATTTCATGCGGCGAGTTTTCGGA
ACGTCTCTTAGTTCCAAGCGAAGCCCAAACCTTTCCGGATATGGTTCAGC
AGTCGTGGCTGAACGGACAGGCTACACTGCAAGAAGCTGGCCGATGCATC
GGGGCAGAGCTTGAAGTGACTATGCTCTGCATGCAAAAGCGACTCGGCAA
GGTAGAATATACTTCGTACACGTACATTTGTAGTCCAAAAAGTTTTATGA
ATGGTGCAGAATTTTCACGACGCCCGACTGAGCGCGTATGAGGGAAAGGA
AAACCATTGTTAGGGGGGGGGACTCGGTGAGACTAACGGCTCCATGTCCG
TTGCGCTTTCGAAGGCCTCCGATGGTACTAGAGTATGTCAATTTGAGCGC
CGACGCAATTATTAGTTGCCTTTGTATATCACGGCCCAAACATCAGGCAG
CACAGACATATTTGGAAATGTTTCAAACCGTTTACATTCGACAATCGAAT
TTCCCCGCTCCTTCCCTCATGCCACTGTACGGCAGCAACCCATCGAGCAA
GGCGTAGGAAGCGAAGGTGGCAAGGAAGAAAGTTCCGCAGACGACGCTCT
CAGAAAGTACACAGAGGAACCGCACGAGAAAGTTGCCGATACTATGGACG
TCGGAGGCCCGTTGGAGGCTTCGTTACAGGAAAGTCTGATGGTGCTAGCT
GATGATATGGCTACTTGCCGGGAGCGCGAGACTCACGAGGAGGTAGATCG
TGAGCTCGGACTTAGTTTCAAGGACGTTCCTGACAGATGGTGTGATCGCG
ATTGCGCAAATAATCGTCTGCACTTTGGTGGACAGATGCAGCGCGATGTG
GTGAAGCCTATTTCTGAAATAGGGGAAGGGATGGCAGGATATGATCCACC
ATCGACTTTGTACCAATACTCTTCAAATGACGACGTGTGGGCCATTTCAG
TCGATGGATCACTACGCCCGAACACGGGGCTGCGTTCCGGAAAGGATATG
GCAGGCGCTTCTCCGTTAAACAAGTCGCCAGCCCTCGCGCCTAGCGGCGG
AACAACTTTCCAACCGGCACCACCTGCCCCCCTGCCATACCCAATACTGC
AATCAAAGGCAAACCAGTCTCGACTTCCCACCGGTTCAAGCATGTTTCTA
GAAAAAAACGCGCCAATACGTGACCTGGGCGAGTCAGGAGGAAAAATGAA
ACATTTGTCGATGAAGGGGCACCTGCAGCGAAACGATGTGGATGGCGGCG
GATTCGCGGTTGCTCGCGCTCGACAAAGACTCCACTCTTTTCGGACAGCC
CGCAAAGGCACGTCAACGGATATCAACGTGATCCGCCGACCCGAGAATGT
TGTGCCACGGCAACTACCAGTAGATCAACGGATGGTGCCGCCGTCTCGAG
ACGATTCAAAACTAGTGTTGGGTAGATTGCGAGAGATGCGACATTCATTG
CATGCTACCTGAGACAGGTTTTCCGCCTTTTCCTTCCGGCGTGTCGATTC
TTCTCTTCTTGCGTATCAATGCCCCTCAAGGTAACTGTTTGCTGAGTCTT
CCTGCTTATACACTTCACATTTCTTATTATTTACTTTGTTGTTGGTGGCG
TCGTGTGCTGACCAGATTTTACCAGTACTTGCACAGGTATGCTGTATCGA
GATCAAGACAGCCGTAAATACGTCTAAACCAAAAAGGACGTTATTTCAGA
GCGTCCAGGGATACGCAGGCGAGAGAATGTAGGAGTCGTGCATGTACGAC
AGTTATTTCTTTGCAGGACTCGAGAGCAAAGGATCTTAAAAGCAATAAGC
TTGCCGAAGAACCCACGTGATCGAATGAACAGCTAGCATGCTTGCTCCAA
CTCAACCTACCTCCGTCGTACAATCGATGGCAGACTCGATCACTATGGGG
CGTGCGAAACGATTAGATCAGACGGAGGTCTTAACTTGTCGCATGCATTT
CCCGTATGATTTTTGTCGTAAATAGGAGTTCTTGTGATTGGAAAT back to topCoding sequence (CDS) from alignment at P-littoralis_Contig128:440963..446357+ >mRNA_P-littoralis_Contig128.74.2 ID=mRNA_P-littoralis_Contig128.74.2|Name=mRNA_P-littoralis_Contig128.74.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2079bp|location=Sequence derived from alignment at P-littoralis_Contig128:440963..446357+ (Pylaiella littoralis U1_48) ATGTGCTTTCAGGACGATTTGGGCAGATGGGGGGAGCAGCTGAACCTGGT ACCAAACGAGGATGCGACAAGAGCAACCGTTTCCAGCGCTGCCGACGTTA CTTCAGACCTTGACGGCGTGCTCAAACAGCTGCGCAGCGGAATGATCCAC GAAGTGCTCATCGAGTCTCCTGGACAGCTGACACCACGAGTAAACCTGCC TGTAAACCTTGCTCAAATCGCCCATGACTTGGACGCGAAGCTACTGGAAT TCACTCTGATGGCGAAAGCGCGAGAGCAGATTGCTGACGAGGCCCACACG GCAGAAGAGGTCGAAAAGGATGCGTGGAGACAGGGAGAGACCAAGCGGGT AGAAGAAATGGTGAGGCAAGAATATGCGACCCTTCAGCACACGACGAATG GGCGGCAATCTTTATCGCCAACCTCAGAAGAAGGATCAGTGCAAATCGGT CATATGCTCCCACGGTTTCCGGGACAATGGAAGTCGCGGGGGTATGATTC CCAACGGGAGTTAAAGGCGCTCCGAAAATTTTCCACCGAACATCCTGCCC TCCCGCCTAGCGCCTTAGGGGGGCCGACCTTGCATACTTTAGAGCACGCT GGTGCGCCGGCGGAAGCTGTGGCTCATCAGATGGCCGATATTCTTCGTGA TGTGGAGGCCAAGGTTCAGCGAATCGAGGCTCTTGAAATTGACGGGTCTC GGGTGGAAGAGGAACGAGAAGCTCAACCCCCCAACGATGTCCCCATCACG GCTACAAAGTCGCCGCCAGGAACAATTGCCCCGTCGCATATTGTTGGAGA CAAACACCACACAGCGAACGATGTGGATGCCAGCTGCACGAAGGACGCCG GCGTGTATGAAAGCGACAAGCTCTTGACCCCGGCACTCGATCAAAGCAAA TCGGCCGCGGAATTGGATGACACCCTCACGACAGGAGGTGTTATGGATAT GGGCGCATTACCCCTGTATACTCCGAACATTTCATGCGGCGAGTTTTCGG AACGTCTCTTAGTTCCAAGCGAAGCCCAAACCTTTCCGGATATGGTTCAG CAGTCGTGGCTGAACGGACAGGCTACACTGCAAGAAGCTGGCCGATGCAT CGGGGCAGAGCTTGAAGTGACTATGCTCTGCATGCAAAAGCGACTCGGCA AGCAACCCATCGAGCAAGGCGTAGGAAGCGAAGGTGGCAAGGAAGAAAGT TCCGCAGACGACGCTCTCAGAAAGTACACAGAGGAACCGCACGAGAAAGT TGCCGATACTATGGACGTCGGAGGCCCGTTGGAGGCTTCGTTACAGGAAA GTCTGATGGTGCTAGCTGATGATATGGCTACTTGCCGGGAGCGCGAGACT CACGAGGAGGTAGATCGTGAGCTCGGACTTAGTTTCAAGGACGTTCCTGA CAGATGGTGTGATCGCGATTGCGCAAATAATCGTCTGCACTTTGGTGGAC AGATGCAGCGCGATGTGGTGAAGCCTATTTCTGAAATAGGGGAAGGGATG GCAGGATATGATCCACCATCGACTTTGTACCAATACTCTTCAAATGACGA CGTGTGGGCCATTTCAGTCGATGGATCACTACGCCCGAACACGGGGCTGC GTTCCGGAAAGGATATGGCAGGCGCTTCTCCGTTAAACAAGTCGCCAGCC CTCGCGCCTAGCGGCGGAACAACTTTCCAACCGGCACCACCTGCCCCCCT GCCATACCCAATACTGCAATCAAAGGCAAACCAGTCTCGACTTCCCACCG GTTCAAGCATGTTTCTAGAAAAAAACGCGCCAATACGTGACCTGGGCGAG TCAGGAGGAAAAATGAAACATTTGTCGATGAAGGGGCACCTGCAGCGAAA CGATGTGGATGGCGGCGGATTCGCGGTTGCTCGCGCTCGACAAAGACTCC ACTCTTTTCGGACAGCCCGCAAAGGCACGTCAACGGATATCAACGTGATC CGCCGACCCGAGAATGTTGTGCCACGGCAACTACCAGTAGATCAACGGAT GGTGCCGCCGTCTCGAGACGATTCAAAACTAGTGTTGGGTAGATTGCGAG AGATGCGACATTCATTGCATGCTACCTGA back to top
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