mRNA_P-littoralis_Contig128.68.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig128.68.1
Unique NamemRNA_P-littoralis_Contig128.68.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5LDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ5_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.740e-36
Identity = 76/148 (51.35%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   13 MRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQTAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTEEAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
            M  A  +A QQ + + P FL R+ N+G  RK ALRKL K R + EKA   +AACR  WE    Y RAV KEC  A A  S G  E+V VSHAQAG L ++ALAL+ +Y KLL G +KR+AFE TA+  +VA++T++ WE  +R KGHI
Sbjct:    1 MSDAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQFAVAVSSAGLNESVLVSHAQAGSLQLKALALKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHI 148          
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: D8LEU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU9_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.340e-35
Identity = 74/152 (48.68%), Postives = 97/152 (63.82%), Query Frame = 1
Query:    1 LPHTMRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQTAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTEEAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
            L   M  AA + ++    W   FL R+ N+G  R  AL KL   R + EKA L +AA +  WE  + Y RAV KEC +A AA S G +E +DVSHAQAGKL I+ALALR VY KLL G ++REAFE +A+ V+++  T++ WE  +R KGHI
Sbjct:   24 LSSAMFDAAREVDRHEKDWRQAFLKRQSNRGVRRTEALGKLANHRSQLEKAALASAARKAGWEKGVEYFRAVVKECQSAVAATSAGLDETMDVSHAQAGKLLIKALALRAVYSKLLEGVSRREAFEASAEFVEMSEGTIKQWELEYRTKGHI 175          
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.580e-35
Identity = 80/152 (52.63%), Postives = 97/152 (63.82%), Query Frame = 1
Query:    1 LPHTMRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQTAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTEEAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
            LP  M  A  +  Q  + W P FL R+ N+G  RK ALRKL K R + EKA   +AACR  WE    Y RAV KEC +A AA S G  E+V VSHAQAG L  +ALAL+ VY KLL GA KR+AFE TA+  +VA +T++ WE  +R KGHI
Sbjct:  178 LPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329          
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.480e-35
Identity = 80/152 (52.63%), Postives = 97/152 (63.82%), Query Frame = 1
Query:    1 LPHTMRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQTAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTEEAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
            LP  M  A  +  Q  + W P FL R+ N+G  RK ALRKL K R + EKA   +AACR  WE    Y RAV KEC +A AA S G  E+V VSHAQAG L  +ALAL+ VY KLL GA KR+AFE TA+  +VA +T++ WE  +R KGHI
Sbjct:  178 LPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329          
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.400e-29
Identity = 75/162 (46.30%), Postives = 100/162 (61.73%), Query Frame = 1
Query:    1 LPHTMRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQTAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTE----------EAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
            LP  M  A  +A QQ + + P FL R+ N+G  RK ALRKL K R + EKA + +AACR  WE    Y RAV KEC + ++ H+  T+          E+V VSHAQAG L  +ALAL+ +Y  LL G +KR+AFE TA+  +VA++T + WE  +R KGHI
Sbjct:  184 LPGAMSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSS-HTCWTQCKRVWATRCSESVLVSHAQAGSLQFKALALKGLYHMLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHI 344          
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5KDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.110e-11
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  262 EEAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
            +E+V VSHAQAG L  +ALAL+ +Y KLL G +KR+AFE TA+  +VA++T + WE  +R KGHI
Sbjct:   54 KESVFVSHAQAGSLQFKALALKGLYHKLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHI 118          
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5KM80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM80_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.300e-9
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1
Query:  271 VDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWE 429
            +DVSHAQAGKL I+ALALR V  KLL G ++REAFE +A+ ++++  T++ WE
Sbjct:    1 MDVSHAQAGKLLIKALALRAVSTKLLKGVSRREAFEASAEFIEMSEGTIKQWE 53          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5LDJ5_9PHAE3.740e-3651.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEU9_ECTSI1.340e-3548.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAS5_9PHAE1.580e-3552.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE4.480e-3552.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVH8_9PHAE1.400e-2946.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDP5_9PHAE1.110e-1155.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM80_9PHAE1.300e-956.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig128contigP-littoralis_Contig128:380575..381265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size456
Hectar predicted targeting categoryother localisation
Exons2
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.085829-UTR-P-littoralis_Contig128:380574..3805861680789571.085829-UTR-P-littoralis_Contig128:380574..380586Pylaiella littoralis U1_48UTRP-littoralis_Contig128 380575..380586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.1007855-CDS-P-littoralis_Contig128:380586..3808381680789571.1007855-CDS-P-littoralis_Contig128:380586..380838Pylaiella littoralis U1_48CDSP-littoralis_Contig128 380587..380838 +
1680789571.1154828-CDS-P-littoralis_Contig128:381073..3812651680789571.1154828-CDS-P-littoralis_Contig128:381073..381265Pylaiella littoralis U1_48CDSP-littoralis_Contig128 381074..381265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig128.68.1prot_P-littoralis_Contig128.68.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig128 380587..381265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig128.68.1

>prot_P-littoralis_Contig128.68.1 ID=prot_P-littoralis_Contig128.68.1|Name=mRNA_P-littoralis_Contig128.68.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp
MRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQ
TAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTEEAVDVSHAQAGKLYIR
ALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI
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mRNA from alignment at P-littoralis_Contig128:380575..381265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig128.68.1 ID=mRNA_P-littoralis_Contig128.68.1|Name=mRNA_P-littoralis_Contig128.68.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=691bp|location=Sequence derived from alignment at P-littoralis_Contig128:380575..381265+ (Pylaiella littoralis U1_48)
CTTCCACACACCATGCGGCAGGCGGCAATCGATGCGGAACAACAGTTTGA CAGCTGGACCCCGACTTTTCTCCTCCGCGAAAGGAACAAGGGATACGACA GGAAGGCTGCTCTCCGTAAGCTGAGGAAGGCGAGGAAGCGGTGGGAAAAA GCGCTCTTGCAGACCGCAGCGTGTAGACAGAGCTGGGAGGACGCGATCAT CTATTGCCGCGCGGTCGAGAAGGAGTGCCTCGCAGCTGCTGCAGCGCACT CGCTCGGGACTGAGGTGAGCGCAGTTGTGACGTTGACACTGCAGTACTTT TGGCTGTGTTCGGCTGTTGTTTCAGCTGAAATACATGCGCTGTTGCCACT GCTGTGCGGATTTTGCTGTGCGTACAGCAGTACATACCTACCTGACGAAA ATGCGTGCGTGCAGTCGAATACCCCCCCTCACTTTGCACTACTGTCCTTT GTTCCCCCTGCTTTTCACCGCGACGTTGCTTGATGTATGGCTGGAGCAGG AGGCTGTGGACGTTTCACACGCGCAGGCCGGGAAGCTCTATATAAGGGCG TTGGCCCTGCGGGTGGTGTACCAGAAGCTGCTGGCGGGGGCGACGAAAAG AGAAGCGTTCGAGGGCACCGCCAAGTTGGTGGATGTGGCGGCGACAACAG TGCAACTTTGGGAGCGCATGTTCCGAAACAAGGGACACATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig128:380575..381265+

>mRNA_P-littoralis_Contig128.68.1 ID=mRNA_P-littoralis_Contig128.68.1|Name=mRNA_P-littoralis_Contig128.68.1|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig128:380575..381265+ (Pylaiella littoralis U1_48)
ATGCGGCAGGCGGCAATCGATGCGGAACAACAGTTTGACAGCTGGACCCC
GACTTTTCTCCTCCGCGAAAGGAACAAGGGATACGACAGGAAGGCTGCTC
TCCGTAAGCTGAGGAAGGCGAGGAAGCGGTGGGAAAAAGCGCTCTTGCAG
ACCGCAGCGTGTAGACAGAGCTGGGAGGACGCGATCATCTATTGCCGCGC
GGTCGAGAAGGAGTGCCTCGCAGCTGCTGCAGCGCACTCGCTCGGGACTG
AGGAGGCTGTGGACGTTTCACACGCGCAGGCCGGGAAGCTCTATATAAGG
GCGTTGGCCCTGCGGGTGGTGTACCAGAAGCTGCTGGCGGGGGCGACGAA
AAGAGAAGCGTTCGAGGGCACCGCCAAGTTGGTGGATGTGGCGGCGACAA
CAGTGCAACTTTGGGAGCGCATGTTCCGAAACAAGGGACACATC
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