mRNA_P-littoralis_Contig128.68.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5LDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ5_9PHAE) HSP 1 Score: 132 bits (331), Expect = 3.740e-36 Identity = 76/148 (51.35%), Postives = 97/148 (65.54%), Query Frame = 1
Query: 13 MRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQTAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTEEAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
M A +A QQ + + P FL R+ N+G RK ALRKL K R + EKA +AACR WE Y RAV KEC A A S G E+V VSHAQAG L ++ALAL+ +Y KLL G +KR+AFE TA+ +VA++T++ WE +R KGHI
Sbjct: 1 MSDAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQFAVAVSSAGLNESVLVSHAQAGSLQLKALALKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHI 148
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: D8LEU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU9_ECTSI) HSP 1 Score: 130 bits (327), Expect = 1.340e-35 Identity = 74/152 (48.68%), Postives = 97/152 (63.82%), Query Frame = 1
Query: 1 LPHTMRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQTAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTEEAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
L M AA + ++ W FL R+ N+G R AL KL R + EKA L +AA + WE + Y RAV KEC +A AA S G +E +DVSHAQAGKL I+ALALR VY KLL G ++REAFE +A+ V+++ T++ WE +R KGHI
Sbjct: 24 LSSAMFDAAREVDRHEKDWRQAFLKRQSNRGVRRTEALGKLANHRSQLEKAALASAARKAGWEKGVEYFRAVVKECQSAVAATSAGLDETMDVSHAQAGKLLIKALALRAVYSKLLEGVSRREAFEASAEFVEMSEGTIKQWELEYRTKGHI 175
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE) HSP 1 Score: 138 bits (348), Expect = 1.580e-35 Identity = 80/152 (52.63%), Postives = 97/152 (63.82%), Query Frame = 1
Query: 1 LPHTMRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQTAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTEEAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
LP M A + Q + W P FL R+ N+G RK ALRKL K R + EKA +AACR WE Y RAV KEC +A AA S G E+V VSHAQAG L +ALAL+ VY KLL GA KR+AFE TA+ +VA +T++ WE +R KGHI
Sbjct: 178 LPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE) HSP 1 Score: 138 bits (348), Expect = 4.480e-35 Identity = 80/152 (52.63%), Postives = 97/152 (63.82%), Query Frame = 1
Query: 1 LPHTMRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQTAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTEEAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
LP M A + Q + W P FL R+ N+G RK ALRKL K R + EKA +AACR WE Y RAV KEC +A AA S G E+V VSHAQAG L +ALAL+ VY KLL GA KR+AFE TA+ +VA +T++ WE +R KGHI
Sbjct: 178 LPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.400e-29 Identity = 75/162 (46.30%), Postives = 100/162 (61.73%), Query Frame = 1
Query: 1 LPHTMRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQTAACRQSWEDAIIYCRAVEKECLAAAAAHSLGTE----------EAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
LP M A +A QQ + + P FL R+ N+G RK ALRKL K R + EKA + +AACR WE Y RAV KEC + ++ H+ T+ E+V VSHAQAG L +ALAL+ +Y LL G +KR+AFE TA+ +VA++T + WE +R KGHI
Sbjct: 184 LPGAMSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSS-HTCWTQCKRVWATRCSESVLVSHAQAGSLQFKALALKGLYHMLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHI 344
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5KDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP5_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.110e-11 Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 262 EEAVDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWERMFRNKGHI 456
+E+V VSHAQAG L +ALAL+ +Y KLL G +KR+AFE TA+ +VA++T + WE +R KGHI
Sbjct: 54 KESVFVSHAQAGSLQFKALALKGLYHKLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHI 118
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Match: A0A6H5KM80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM80_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 1.300e-9 Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1
Query: 271 VDVSHAQAGKLYIRALALRVVYQKLLAGATKREAFEGTAKLVDVAATTVQLWE 429
+DVSHAQAGKL I+ALALR V KLL G ++REAFE +A+ ++++ T++ WE
Sbjct: 1 MDVSHAQAGKLLIKALALRAVSTKLLKGVSRREAFEASAEFIEMSEGTIKQWE 53 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig128.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig128.68.1 >prot_P-littoralis_Contig128.68.1 ID=prot_P-littoralis_Contig128.68.1|Name=mRNA_P-littoralis_Contig128.68.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp MRQAAIDAEQQFDSWTPTFLLRERNKGYDRKAALRKLRKARKRWEKALLQback to top mRNA from alignment at P-littoralis_Contig128:380575..381265+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig128.68.1 ID=mRNA_P-littoralis_Contig128.68.1|Name=mRNA_P-littoralis_Contig128.68.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=691bp|location=Sequence derived from alignment at P-littoralis_Contig128:380575..381265+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig128:380575..381265+ >mRNA_P-littoralis_Contig128.68.1 ID=mRNA_P-littoralis_Contig128.68.1|Name=mRNA_P-littoralis_Contig128.68.1|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig128:380575..381265+ (Pylaiella littoralis U1_48)back to top |