mRNA_P-littoralis_Contig128.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig128.67.1
Unique NamemRNA_P-littoralis_Contig128.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig128.67.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 4.340e-61
Identity = 101/109 (92.66%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:    1 MSSTFSDETWRCFK-KYVSLLGDGSVVSAGLHNKSKSYRIHLVADLPEGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVERLRYSRHRIEAEAEAEVA 324
            MSSTFSDETWR F+ K VSLLGDGSVVSAGL NKSKSYRIHLVADL EGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDW PSEGGNVVERLR SRHRIEAEAEAEVA
Sbjct:    1 MSSTFSDETWRYFREKCVSLLGDGSVVSAGLDNKSKSYRIHLVADLREGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWRPSEGGNVVERLRDSRHRIEAEAEAEVA 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig128.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5I2_ECTSI4.340e-6192.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig128contigP-littoralis_Contig128:380051..380527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size477
Hectar predicted targeting categoryother localisation
Exons1
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.0537307-CDS-P-littoralis_Contig128:380050..3805271680789571.0537307-CDS-P-littoralis_Contig128:380050..380527Pylaiella littoralis U1_48CDSP-littoralis_Contig128 380051..380527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig128.67.1prot_P-littoralis_Contig128.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig128 380051..380527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig128.67.1

>prot_P-littoralis_Contig128.67.1 ID=prot_P-littoralis_Contig128.67.1|Name=mRNA_P-littoralis_Contig128.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MSSTFSDETWRCFKKYVSLLGDGSVVSAGLHNKSKSYRIHLVADLPEGVR
KEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVERLRYSRHRIE
AEAEAEVAQLEPRDRGTAMPAPPNMHAPRSAAATAKAQAGHAAASARRSY
ARDCKSTG*
back to top

mRNA from alignment at P-littoralis_Contig128:380051..380527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig128.67.1 ID=mRNA_P-littoralis_Contig128.67.1|Name=mRNA_P-littoralis_Contig128.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig128:380051..380527+ (Pylaiella littoralis U1_48)
ATGTCGTCCACGTTCAGCGATGAGACATGGCGTTGCTTCAAGAAGTATGT
ATCGCTTCTGGGAGACGGGAGTGTTGTCAGCGCGGGCCTACACAACAAGA
GCAAGTCGTATCGCATACATCTTGTCGCGGACCTCCCTGAGGGCGTCAGG
AAGGAGTGGAGGAGTACCCCGATCAAACGCCCAAAGGGCCGCAAGACGGG
TCGCGACCGGGGTGCCGAGCACAAGTTCTTCGAGGACTGGTGGCCATCTG
AGGGCGGCAACGTCGTCGAGCGCCTGCGATACTCCAGGCACCGCATTGAG
GCGGAGGCAGAAGCGGAGGTGGCGCAGCTCGAACCAAGAGACCGCGGGAC
TGCCATGCCAGCGCCGCCGAACATGCACGCCCCGAGAAGCGCGGCGGCAA
CCGCGAAGGCGCAGGCAGGCCACGCGGCAGCTTCGGCCCGAAGAAGCTAC
GCCAGAGACTGCAAGAGTACAGGGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig128:380051..380527+

>mRNA_P-littoralis_Contig128.67.1 ID=mRNA_P-littoralis_Contig128.67.1|Name=mRNA_P-littoralis_Contig128.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig128:380051..380527+ (Pylaiella littoralis U1_48)
ATGTCGTCCACGTTCAGCGATGAGACATGGCGTTGCTTCAAGAAGTATGT
ATCGCTTCTGGGAGACGGGAGTGTTGTCAGCGCGGGCCTACACAACAAGA
GCAAGTCGTATCGCATACATCTTGTCGCGGACCTCCCTGAGGGCGTCAGG
AAGGAGTGGAGGAGTACCCCGATCAAACGCCCAAAGGGCCGCAAGACGGG
TCGCGACCGGGGTGCCGAGCACAAGTTCTTCGAGGACTGGTGGCCATCTG
AGGGCGGCAACGTCGTCGAGCGCCTGCGATACTCCAGGCACCGCATTGAG
GCGGAGGCAGAAGCGGAGGTGGCGCAGCTCGAACCAAGAGACCGCGGGAC
TGCCATGCCAGCGCCGCCGAACATGCACGCCCCGAGAAGCGCGGCGGCAA
CCGCGAAGGCGCAGGCAGGCCACGCGGCAGCTTCGGCCCGAAGAAGCTAC
GCCAGAGACTGCAAGAGTACAGGGTGA
back to top