mRNA_P-littoralis_Contig128.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig128.66.1
Unique NamemRNA_P-littoralis_Contig128.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.900e-25
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 SNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTQIKIDQIFSTYG 252
            SNLVCT +WLAL RL  M+  P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHT IKIDQ+FS + 
Sbjct:   11 SNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 95
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BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.010e-23
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 SNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTQIKIDQIFSTYG 252
            SNLVCT +WLAL RL  M+  P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHT IKIDQ+FS + 
Sbjct:   11 SNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 95
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BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.280e-23
Identity = 53/85 (62.35%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:    1 SNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTQIKIDQIFSTYG 252
            SNLVCT +WLAL RL  M   P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHT IKIDQ+FS + 
Sbjct:  123 SNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 207
[Close]
BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.650e-22
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 SNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTQIKIDQIFS 243
            SNLVCT +WLAL RL +M+  P    +I  L L LDNCVGENKNNIVMAF+G LV  GV+G  EV F+ VGHT  K DQ+FS
Sbjct:  238 SNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFS 319
[Close]
BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.140e-20
Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 SNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTQIKIDQIFS 243
            SNL CT +WLAL RL  M+  P    +I    L LDNCVGENKNNIVMAF+G LV  GV+G  EV F+ +GHT IKIDQ+FS
Sbjct:   11 SNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFS 92
[Close]
BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 5.350e-20
Identity = 50/85 (58.82%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 SNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTQIKIDQIFSTYG 252
            SNLVCT +WLAL RL  M+  P    YI  L L L NCVGE KNNIV+AF+G LV  GVV   EV F+ VGHT IKID +FS + 
Sbjct:  285 SNLVCTALWLALKRLSAMWAKPGQRFYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVVVSAEVCFLIVGHTLIKIDHVFSRFS 369
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BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.460e-16
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   76 YIDMLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTQIKIDQIFS 243
            YI    + +DNCV ENKN+IV+ +LG LV  G++G VEV FM VGHT IKIDQ+FS
Sbjct:   10 YIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFS 65
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BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.210e-13
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:  103 DNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTQIKIDQIFSTYG 252
            DNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHT IKIDQ+FS + 
Sbjct:  213 DNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 262
[Close]
BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.160e-10
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   64 PTALYIDMLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTQIKIDQIFSTYG 252
            P+   I      +DNC  ENKNN  + F G LV   V+  VE+NFM VGHT +KIDQIFS + 
Sbjct:    9 PSGYLIQHAHWQVDNCASENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSRFS 71
[Close]
BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Match: A0A2N0NKQ2_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0NKQ2_9GLOM)

HSP 1 Score: 50.8 bits (120), Expect = 2.150e-5
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   88 LLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTQIKIDQIF 240
            L+++ DNCVG+NKNN  + F   L+  GV   VE+NFM  GHT+   D  F
Sbjct:  149 LIITCDNCVGQNKNNYFLFFYSWLIDRGVYEEVEMNFMIPGHTKFICDSCF 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig128.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KN27_9PHAE5.900e-2562.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE1.010e-2362.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE5.280e-2362.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE2.650e-2262.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE1.140e-2060.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE5.350e-2058.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA0_9PHAE3.460e-1660.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE1.210e-1368.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW3_9PHAE1.160e-1049.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A2N0NKQ2_9GLOM2.150e-547.06Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig128contigP-littoralis_Contig128:375022..375276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7739.XP_002587783.1
Preferred nameEXOC1
PFAMsSec3-PIP2_bind,Sec3_C
Model size255
Max annot lvl33208|Metazoa
KEGG koko:K19983
Hectar predicted targeting categorysignal peptide
GOsGO:0000145,GO:0002791,GO:0002793,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008289,GO:0009894,GO:0009898,GO:0009987,GO:0010506,GO:0016020,GO:0016192,GO:0016241,GO:0016324,GO:0017016,GO:0017048,GO:0017049,GO:0019222,GO:0019899,GO:0023052,GO:0031267,GO:0031323,GO:0031329,GO:0031503,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0035556,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0045177,GO:0046903,GO:0048015,GO:0048017,GO:0048193,GO:0048518,GO:0048522,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051601,GO:0051641,GO:0051716,GO:0065007,GO:0070201,GO:0070727,GO:0071944,GO:0090087,GO:0098552,GO:0098562,GO:0098590,GO:0098592,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936,GO:1903530,GO:1903532,GO:1904951
Exons1
Evalue9.2e-11
EggNOG OGsKOG2148@1|root,KOG2148@2759|Eukaryota,38EC2@33154|Opisthokonta,3B9M0@33208|Metazoa,3CWXP@33213|Bilateria,48923@7711|Chordata
DescriptionExocyst complex component
Cds size255
COG categoryU
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.0216448-CDS-P-littoralis_Contig128:375021..3752761680789571.0216448-CDS-P-littoralis_Contig128:375021..375276Pylaiella littoralis U1_48CDSP-littoralis_Contig128 375022..375276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig128.66.1prot_P-littoralis_Contig128.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig128 375022..375276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig128.66.1

>prot_P-littoralis_Contig128.66.1 ID=prot_P-littoralis_Contig128.66.1|Name=mRNA_P-littoralis_Contig128.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
SNLVCTVVWLALARLFDMFGGPTALYIDMLLLSLDNCVGENKNNIVMAFL
GCLVLMGVVGRVEVNFMQVGHTQIKIDQIFSTYG*
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mRNA from alignment at P-littoralis_Contig128:375022..375276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig128.66.1 ID=mRNA_P-littoralis_Contig128.66.1|Name=mRNA_P-littoralis_Contig128.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig128:375022..375276+ (Pylaiella littoralis U1_48)
AGTAACCTTGTCTGCACTGTGGTGTGGCTCGCGTTGGCTCGACTGTTTGA
CATGTTCGGCGGCCCCACGGCACTGTACATCGACATGTTGCTTCTATCCC
TGGACAATTGTGTCGGCGAAAACAAAAACAACATTGTCATGGCCTTCCTG
GGATGCTTGGTGCTGATGGGGGTCGTTGGGAGAGTGGAAGTAAACTTCAT
GCAAGTTGGACACACACAAATAAAAATCGATCAGATTTTTTCCACGTACG
GATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig128:375022..375276+

>mRNA_P-littoralis_Contig128.66.1 ID=mRNA_P-littoralis_Contig128.66.1|Name=mRNA_P-littoralis_Contig128.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig128:375022..375276+ (Pylaiella littoralis U1_48)
AGTAACCTTGTCTGCACTGTGGTGTGGCTCGCGTTGGCTCGACTGTTTGA
CATGTTCGGCGGCCCCACGGCACTGTACATCGACATGTTGCTTCTATCCC
TGGACAATTGTGTCGGCGAAAACAAAAACAACATTGTCATGGCCTTCCTG
GGATGCTTGGTGCTGATGGGGGTCGTTGGGAGAGTGGAAGTAAACTTCAT
GCAAGTTGGACACACACAAATAAAAATCGATCAGATTTTTTCCACGTACG
GATAG
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