mRNA_P-littoralis_Contig128.23.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 220 bits (561), Expect = 9.170e-70 Identity = 110/141 (78.01%), Postives = 118/141 (83.69%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSS----------SLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFLR 393
RRRLDRYCT PEAV+ L++AVAI+GCVLDMCGG EDAVAQ F TCEVLTNDVSS SLLSF D+F KAN G +PDWVVTSPPYKGAVGFVKAALAVATKG ALKLPLSFLEPCADRGGWL + PPAVC+FLR
Sbjct: 123 RRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLR 263
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.710e-57 Identity = 93/145 (64.14%), Postives = 106/145 (73.10%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSS---------------SLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFL 390
RR LDRYCTSPEAV+AL AV + GCVLDMCGG DA+A R G TC+V+TND+S+ SL SF DFL A G RPDWV+TSPPYKGA+ +VK+AL++A KG ALKLPLSFLEPCADRGGWL PPAVCVF
Sbjct: 77 RRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 181 bits (458), Expect = 3.980e-55 Identity = 89/140 (63.57%), Postives = 103/140 (73.57%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVS----------SSLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFL 390
RR +DRYCTSP ++AL V+ISGCVLDMCGG +DAVA R TC+VLTNDV +S SF DDFL A+ G +PDW+VTSPPYKGA+ FVKAAL VA KG ALKLPLSFLEPCADR GWL PPA+C+ +
Sbjct: 65 RRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMM 204
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 176 bits (445), Expect = 1.640e-53 Identity = 89/141 (63.12%), Postives = 102/141 (72.34%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSS----------SLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFLR 393
RR LDRYCTSPEA+DA AV I+GCVLDMCGG DAVA R TCE+LTNDVSS SL SF +DFL A SG RP+WV TSPPY A+ FVKAA+++ATKG K+ + FLEPCAD GGWL PP++CVFLR
Sbjct: 24 RRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLR 164
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 155 bits (392), Expect = 9.830e-46 Identity = 80/111 (72.07%), Postives = 89/111 (80.18%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSSSLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEP 333
RRRLDRYCTSP AVDALR AVAI+GCVLDMCGG EDAVAQ FGGTC ++ +SL+ F D+F+K N G +PDWVVTSPPYKG+VGFV AALAVATKG ALKL L P
Sbjct: 42 RRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTC----TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 155 bits (392), Expect = 2.470e-44 Identity = 86/147 (58.50%), Postives = 95/147 (64.63%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSSSLLS----------------FEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFLR 393
RR LDRYCTS AV+AL DAV +SG VLDMCGG +DAVA++ TCEV+TNDVSS L S F +FL +P+ VV SPPYKGAV FVKAAL VA G ALK LSFLEPC DR WL PP VCVFLR
Sbjct: 113 RRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLR 259
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 146 bits (369), Expect = 7.050e-43 Identity = 72/102 (70.59%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 88 MCGGAEDAVAQRFGGTCEVLTNDVSSSLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFLR 393
MCGG EDAVA FGGTCEVLTNDVSS L A+ G +PDWVVTSPPYKGAVGFVKA LAVA KG AL+LPLSF +PCADRG WL + PP +C FLR
Sbjct: 1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSP-------AHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLR 95
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 144 bits (363), Expect = 9.390e-42 Identity = 71/112 (63.39%), Postives = 81/112 (72.32%), Query Frame = 1
Query: 88 MCGGAEDAVAQRFGGTCEVLTNDVSS----------SLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFLR 393
MCGG DAVA R TCE+LTNDVSS SL F +DFL A SG RP+WVVTSPPY A+ FVKAA+++ATKG A K+P+ FLEPCADRGGWL PP+VCVFLR
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLR 112
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 139 bits (350), Expect = 8.610e-39 Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSS----------SLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLP 315
RR LDRYCTSPEAV+AL AV+I+GC+LD+CGG DAVA R G TCEVLTNDVSS SL SF DDF A+SG RPDWVVTSP YK A+ FVKAA+++AT+G + P
Sbjct: 90 RRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5KZK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK3_9PHAE) HSP 1 Score: 127 bits (319), Expect = 4.210e-35 Identity = 67/91 (73.63%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSS----------SLLSFEDDFLKANSGMRPDWVVTSPP 243
RRRLDRYCTSP AVDALRDAV I GCVLDMCGG E AVA FGGTCEVLTNDV S SLLSF DFLKA+ G +PDWVVTSPP
Sbjct: 57 RRRLDRYCTSPGAVDALRDAVDIMGCVLDMCGGPEAAVALGFGGTCEVLTNDVGSRLSPDSNLDASLLSFPSDFLKAHPGKQPDWVVTSPP 147 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig128.23.1 >prot_P-littoralis_Contig128.23.1 ID=prot_P-littoralis_Contig128.23.1|Name=mRNA_P-littoralis_Contig128.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTback to top mRNA from alignment at P-littoralis_Contig128:81732..82295+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig128.23.1 ID=mRNA_P-littoralis_Contig128.23.1|Name=mRNA_P-littoralis_Contig128.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig128:81732..82295+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig128:81732..82295+ >mRNA_P-littoralis_Contig128.23.1 ID=mRNA_P-littoralis_Contig128.23.1|Name=mRNA_P-littoralis_Contig128.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig128:81732..82295+ (Pylaiella littoralis U1_48)back to top |