mRNA_P-littoralis_Contig128.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig128.23.1
Unique NamemRNA_P-littoralis_Contig128.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 9.170e-70
Identity = 110/141 (78.01%), Postives = 118/141 (83.69%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSS----------SLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFLR 393
            RRRLDRYCT PEAV+ L++AVAI+GCVLDMCGG EDAVAQ F  TCEVLTNDVSS          SLLSF D+F KAN G +PDWVVTSPPYKGAVGFVKAALAVATKG ALKLPLSFLEPCADRGGWL + PPAVC+FLR
Sbjct:  123 RRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLR 263          
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.710e-57
Identity = 93/145 (64.14%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSS---------------SLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFL 390
            RR LDRYCTSPEAV+AL  AV + GCVLDMCGG  DA+A R G TC+V+TND+S+               SL SF  DFL A  G RPDWV+TSPPYKGA+ +VK+AL++A KG ALKLPLSFLEPCADRGGWL   PPAVCVF 
Sbjct:   77 RRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221          
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.980e-55
Identity = 89/140 (63.57%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVS----------SSLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFL 390
            RR +DRYCTSP  ++AL   V+ISGCVLDMCGG +DAVA R   TC+VLTNDV           +S  SF DDFL A+ G +PDW+VTSPPYKGA+ FVKAAL VA KG ALKLPLSFLEPCADR GWL   PPA+C+ +
Sbjct:   65 RRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMM 204          
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.640e-53
Identity = 89/141 (63.12%), Postives = 102/141 (72.34%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSS----------SLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFLR 393
            RR LDRYCTSPEA+DA   AV I+GCVLDMCGG  DAVA R   TCE+LTNDVSS          SL SF +DFL A SG RP+WV TSPPY  A+ FVKAA+++ATKG   K+ + FLEPCAD GGWL   PP++CVFLR
Sbjct:   24 RRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLR 164          
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 9.830e-46
Identity = 80/111 (72.07%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSSSLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEP 333
            RRRLDRYCTSP AVDALR AVAI+GCVLDMCGG EDAVAQ FGGTC     ++ +SL+ F D+F+K N G +PDWVVTSPPYKG+VGFV AALAVATKG ALKL L    P
Sbjct:   42 RRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTC----TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148          
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.470e-44
Identity = 86/147 (58.50%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSSSLLS----------------FEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFLR 393
            RR LDRYCTS  AV+AL DAV +SG VLDMCGG +DAVA++   TCEV+TNDVSS L S                F  +FL      +P+ VV SPPYKGAV FVKAAL VA  G ALK  LSFLEPC DR  WL   PP VCVFLR
Sbjct:  113 RRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLR 259          
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.050e-43
Identity = 72/102 (70.59%), Postives = 78/102 (76.47%), Query Frame = 1
Query:   88 MCGGAEDAVAQRFGGTCEVLTNDVSSSLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFLR 393
            MCGG EDAVA  FGGTCEVLTNDVSS L         A+ G +PDWVVTSPPYKGAVGFVKA LAVA KG AL+LPLSF +PCADRG WL + PP +C FLR
Sbjct:    1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSP-------AHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLR 95          
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 9.390e-42
Identity = 71/112 (63.39%), Postives = 81/112 (72.32%), Query Frame = 1
Query:   88 MCGGAEDAVAQRFGGTCEVLTNDVSS----------SLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPLSFLEPCADRGGWLAETPPAVCVFLR 393
            MCGG  DAVA R   TCE+LTNDVSS          SL  F +DFL A SG RP+WVVTSPPY  A+ FVKAA+++ATKG A K+P+ FLEPCADRGGWL   PP+VCVFLR
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLR 112          
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 8.610e-39
Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSS----------SLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLP 315
            RR LDRYCTSPEAV+AL  AV+I+GC+LD+CGG  DAVA R G TCEVLTNDVSS          SL SF DDF  A+SG RPDWVVTSP YK A+ FVKAA+++AT+G  +  P
Sbjct:   90 RRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204          
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Match: A0A6H5KZK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 4.210e-35
Identity = 67/91 (73.63%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLTNDVSS----------SLLSFEDDFLKANSGMRPDWVVTSPP 243
            RRRLDRYCTSP AVDALRDAV I GCVLDMCGG E AVA  FGGTCEVLTNDV S          SLLSF  DFLKA+ G +PDWVVTSPP
Sbjct:   57 RRRLDRYCTSPGAVDALRDAVDIMGCVLDMCGGPEAAVALGFGGTCEVLTNDVGSRLSPDSNLDASLLSFPSDFLKAHPGKQPDWVVTSPP 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig128.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK3_9PHAE9.170e-7078.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI1.710e-5764.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K049_9PHAE3.980e-5563.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G0Y0_ECTSI1.640e-5363.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1N5_9PHAE9.830e-4672.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE2.470e-4458.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K929_9PHAE7.050e-4370.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI9.390e-4263.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD58_9PHAE8.610e-3963.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZK3_9PHAE4.210e-3573.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig128contigP-littoralis_Contig128:81732..82295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1524882.A0A076GD02_9CAUD
Model size393
Max annot lvl10699|Siphoviridae
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.79e-06
EggNOG OGs4QDWY@10239|Viruses,4QRR8@28883|Caudovirales,4QMIM@10699|Siphoviridae
Descriptionmethyltransferase activity
Cds size393
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789568.0715282-CDS-P-littoralis_Contig128:81731..818981680789568.0715282-CDS-P-littoralis_Contig128:81731..81898Pylaiella littoralis U1_48CDSP-littoralis_Contig128 81732..81898 +
1680789568.0882354-CDS-P-littoralis_Contig128:82069..822951680789568.0882354-CDS-P-littoralis_Contig128:82069..82295Pylaiella littoralis U1_48CDSP-littoralis_Contig128 82070..82295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig128.23.1prot_P-littoralis_Contig128.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig128 81732..82295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig128.23.1

>prot_P-littoralis_Contig128.23.1 ID=prot_P-littoralis_Contig128.23.1|Name=mRNA_P-littoralis_Contig128.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGAEDAVAQRFGGTCEVLT
NDVSSSLLSFEDDFLKANSGMRPDWVVTSPPYKGAVGFVKAALAVATKGA
ALKLPLSFLEPCADRGGWLAETPPAVCVFLR
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mRNA from alignment at P-littoralis_Contig128:81732..82295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig128.23.1 ID=mRNA_P-littoralis_Contig128.23.1|Name=mRNA_P-littoralis_Contig128.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig128:81732..82295+ (Pylaiella littoralis U1_48)
CGCCGGCGACTTGATCGGTACTGTACTTCGCCGGAGGCGGTGGACGCCCT GCGAGATGCTGTTGCTATATCGGGTTGTGTGTTGGACATGTGCGGCGGAG CTGAAGACGCTGTGGCGCAGAGGTTTGGGGGCACGTGTGAAGTTCTCACG AACGACGTGAGCTCGAGGTAAGGAGGTCCATTTAGGAGAAAAGTCGTTTT CGAATATTTGTTTCCAGCAGTTCTGTAGATAAGTATTTCCAACGCAATGA AAACAAATGGCGTACTCACCTTTCCTCTGTTGGTGTTTCTTTCCGTCCGC CACAAAAGGCTATCGCCGGATACCAACCTGGACGCGAGCCTGCTTTCTTT TGAGGATGATTTTCTCAAAGCCAACTCCGGAATGCGACCAGACTGGGTCG TCACGAGCCCTCCGTACAAGGGTGCTGTGGGGTTTGTCAAGGCGGCGTTG GCGGTAGCGACGAAAGGCGCGGCGCTGAAATTGCCGCTATCGTTCCTTGA ACCCTGTGCCGACCGTGGTGGTTGGCTTGCGGAAACCCCCCCGGCTGTGT GCGTGTTTTTACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig128:81732..82295+

>mRNA_P-littoralis_Contig128.23.1 ID=mRNA_P-littoralis_Contig128.23.1|Name=mRNA_P-littoralis_Contig128.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig128:81732..82295+ (Pylaiella littoralis U1_48)
CGCCGGCGACTTGATCGGTACTGTACTTCGCCGGAGGCGGTGGACGCCCT
GCGAGATGCTGTTGCTATATCGGGTTGTGTGTTGGACATGTGCGGCGGAG
CTGAAGACGCTGTGGCGCAGAGGTTTGGGGGCACGTGTGAAGTTCTCACG
AACGACGTGAGCTCGAGCCTGCTTTCTTTTGAGGATGATTTTCTCAAAGC
CAACTCCGGAATGCGACCAGACTGGGTCGTCACGAGCCCTCCGTACAAGG
GTGCTGTGGGGTTTGTCAAGGCGGCGTTGGCGGTAGCGACGAAAGGCGCG
GCGCTGAAATTGCCGCTATCGTTCCTTGAACCCTGTGCCGACCGTGGTGG
TTGGCTTGCGGAAACCCCCCCGGCTGTGTGCGTGTTTTTACGG
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