mRNA_P-littoralis_Contig128.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig128.71.1
Unique NamemRNA_P-littoralis_Contig128.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig128.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig128contigP-littoralis_Contig128:423097..423878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size782
Hectar predicted targeting categoryother localisation
Exons1
Cds size780
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.6345756-CDS-P-littoralis_Contig128:423096..4238761680789567.6345756-CDS-P-littoralis_Contig128:423096..423876Pylaiella littoralis U1_48CDSP-littoralis_Contig128 423097..423876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig128.71.1prot_P-littoralis_Contig128.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig128 423097..423876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig128.71.1

>prot_P-littoralis_Contig128.71.1 ID=prot_P-littoralis_Contig128.71.1|Name=mRNA_P-littoralis_Contig128.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=260bp
SVSARTPDGTEIHAGGRAYSTVEAGNRGLHSDRESFGSQRFSGERQQQQQ
QNPLPSTFYRALSKRSVGRYILATSSLVGECARVYTPAPVGAVASSLWNR
FGMGLGSHGRDRRGSSGQNKSSGFSYDRFMSTNNRAENDEDMLHGDGVFS
APAQPDKYGRVSAAFLARHEIGGIEGLRIVEKELEGDMADPVPHPFVFHE
SYGAPSKTDEMSKTRRQSTETRTGSVLKSIASLGRDRNKGATDDMDLLSD
SEDVGDECHG
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mRNA from alignment at P-littoralis_Contig128:423097..423878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig128.71.1 ID=mRNA_P-littoralis_Contig128.71.1|Name=mRNA_P-littoralis_Contig128.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=782bp|location=Sequence derived from alignment at P-littoralis_Contig128:423097..423878+ (Pylaiella littoralis U1_48)
TCGGTGTCGGCACGAACGCCCGATGGCACCGAGATTCACGCCGGAGGGAG
GGCTTACAGCACGGTGGAAGCTGGCAATCGGGGTCTCCATTCGGACCGTG
AGAGTTTTGGATCACAACGATTCAGCGGAGAACGGCAGCAGCAGCAACAA
CAAAATCCTCTCCCCTCAACCTTTTACAGAGCTCTCTCAAAACGTTCAGT
GGGGCGGTACATACTAGCGACATCATCACTGGTTGGTGAATGTGCCCGGG
TCTACACACCGGCGCCTGTTGGTGCCGTTGCCTCATCCCTGTGGAATCGT
TTCGGTATGGGGCTCGGTTCGCACGGACGAGATCGTCGTGGTTCATCGGG
GCAGAACAAATCCTCGGGGTTCTCGTATGACAGATTCATGTCGACCAACA
ACAGGGCCGAAAACGACGAGGATATGCTACATGGGGATGGTGTTTTTTCC
GCCCCTGCCCAACCGGACAAGTATGGTCGAGTTTCCGCGGCATTTTTGGC
GCGGCACGAAATCGGCGGTATCGAAGGCTTGCGAATAGTGGAGAAAGAGT
TGGAAGGTGACATGGCGGATCCAGTGCCACATCCGTTTGTTTTCCACGAG
AGTTATGGCGCCCCAAGTAAAACTGATGAGATGAGCAAGACCCGCCGACA
GTCTACAGAGACGAGGACGGGGTCCGTGTTAAAGTCGATTGCTAGTCTAG
GAAGAGACCGGAACAAGGGAGCAACGGATGACATGGATTTGTTGTCTGAT
TCGGAAGATGTAGGAGACGAATGTCACGGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig128:423097..423878+

>mRNA_P-littoralis_Contig128.71.1 ID=mRNA_P-littoralis_Contig128.71.1|Name=mRNA_P-littoralis_Contig128.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig128:423097..423878+ (Pylaiella littoralis U1_48)
TCGGTGTCGGCACGAACGCCCGATGGCACCGAGATTCACGCCGGAGGGAG
GGCTTACAGCACGGTGGAAGCTGGCAATCGGGGTCTCCATTCGGACCGTG
AGAGTTTTGGATCACAACGATTCAGCGGAGAACGGCAGCAGCAGCAACAA
CAAAATCCTCTCCCCTCAACCTTTTACAGAGCTCTCTCAAAACGTTCAGT
GGGGCGGTACATACTAGCGACATCATCACTGGTTGGTGAATGTGCCCGGG
TCTACACACCGGCGCCTGTTGGTGCCGTTGCCTCATCCCTGTGGAATCGT
TTCGGTATGGGGCTCGGTTCGCACGGACGAGATCGTCGTGGTTCATCGGG
GCAGAACAAATCCTCGGGGTTCTCGTATGACAGATTCATGTCGACCAACA
ACAGGGCCGAAAACGACGAGGATATGCTACATGGGGATGGTGTTTTTTCC
GCCCCTGCCCAACCGGACAAGTATGGTCGAGTTTCCGCGGCATTTTTGGC
GCGGCACGAAATCGGCGGTATCGAAGGCTTGCGAATAGTGGAGAAAGAGT
TGGAAGGTGACATGGCGGATCCAGTGCCACATCCGTTTGTTTTCCACGAG
AGTTATGGCGCCCCAAGTAAAACTGATGAGATGAGCAAGACCCGCCGACA
GTCTACAGAGACGAGGACGGGGTCCGTGTTAAAGTCGATTGCTAGTCTAG
GAAGAGACCGGAACAAGGGAGCAACGGATGACATGGATTTGTTGTCTGAT
TCGGAAGATGTAGGAGACGAATGTCACGGA
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