mRNA_P-littoralis_Contig1279.7.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1279.7.2
Unique NamemRNA_P-littoralis_Contig1279.7.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1279.7.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1279contigP-littoralis_Contig1279:32580..34911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size788
Hectar predicted targeting categoryother localisation
Exons5
Cds size786
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.4200354-CDS-P-littoralis_Contig1279:32579..326901680789567.4200354-CDS-P-littoralis_Contig1279:32579..32690Pylaiella littoralis U1_48CDSP-littoralis_Contig1279 32580..32690 -
1680789567.4296615-CDS-P-littoralis_Contig1279:33020..331791680789567.4296615-CDS-P-littoralis_Contig1279:33020..33179Pylaiella littoralis U1_48CDSP-littoralis_Contig1279 33021..33179 -
1680789567.4380677-CDS-P-littoralis_Contig1279:33662..338411680789567.4380677-CDS-P-littoralis_Contig1279:33662..33841Pylaiella littoralis U1_48CDSP-littoralis_Contig1279 33663..33841 -
1680789567.450119-CDS-P-littoralis_Contig1279:34257..344831680789567.450119-CDS-P-littoralis_Contig1279:34257..34483Pylaiella littoralis U1_48CDSP-littoralis_Contig1279 34258..34483 -
1680789567.4585652-CDS-P-littoralis_Contig1279:34800..349111680789567.4585652-CDS-P-littoralis_Contig1279:34800..34911Pylaiella littoralis U1_48CDSP-littoralis_Contig1279 34801..34911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1279.7.2prot_P-littoralis_Contig1279.7.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1279 32580..34911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1279.7.2

>prot_P-littoralis_Contig1279.7.2 ID=prot_P-littoralis_Contig1279.7.2|Name=mRNA_P-littoralis_Contig1279.7.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=262bp
MPNEDVAAYFMIEVGQTWSPPLKTLIAVSLLKESGLPIQVGSSAPRSGTT
KAVAGSRAVYSQACHLVLPFLHGITSHPAWKTPAIVDQHAVVKAAYLLYK
EGGGELNKAQFSERLVRSVIPMKSTLNHDFHEVLGNNTKGAVRKGAENLL
KAGEPITSETIFPAARRVFRNQHSAVEEMVGNMVMERTVNPARHCRGTPA
RSPQDRVPMRTIEVFGCAPSSFFNFVAVPMQAFMMNDLRCKLLAEVETLR
NATRANDDGGVD
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mRNA from alignment at P-littoralis_Contig1279:32580..34911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1279.7.2 ID=mRNA_P-littoralis_Contig1279.7.2|Name=mRNA_P-littoralis_Contig1279.7.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2332bp|location=Sequence derived from alignment at P-littoralis_Contig1279:32580..34911- (Pylaiella littoralis U1_48)
ATGCCGAATGAGGACGTCGCCGCGTACTTCATGATAGAAGTGGGGCAGAC
GTGGTCTCCGCCGCTCAAGACGTTGATCGCCGTCAGCCTCCTCAAGGAGT
CAGGGCTACCTGTAAGTGCTGGTGTTGCTCCAGCGGTTTTCACTCAAGCG
CCCCCCCCCCCGCCAAACGCGTGTCACTCAAGTTATTATTTCAACCAAAT
GAGTTACCATCGTGCTTAAGAATTATGAACTGGTCGGCAAGCAGCGGAAG
ATATGATGCCGTGTGTAGCGAGATGGCGTGTATCGTTCTTTCATGGCTTT
AATGGTACCCCAATCCAGGCGATGCTGGGCCGTTCCAGCTCGGTACATGT
ATTTACGGTCATGCGCTCCCCGGCTATAACCCTACCCCTATGCTTGCTAT
TGTCATTTTGTTTTTCGCACTGCGACAGATCCAGGTAGGTTCTTCTGCCC
CCCGCTCTGGCACCACAAAGGCTGTGGCGGGGTCCAGGGCTGTTTACAGC
CAGGCCTGCCACCTGGTACTGCCGTTCTTGCATGGGATTACGTCCCACCC
GGCATGGAAGACCCCTGCCATTGTCGATCAACATGCTGTCGTAAAGGCAG
CATACCTCCTCTACAAGGAGGGCGGTGGCGAGCTCAACAAAGCTCAATTT
TCCGGTAAGAACTCTTAATAACCTTTCAGAGCAACATGACCTGCTTTGTG
CAGCCATGGATTCCACTTATTCTCAACGCTTGCTGTGAAGTTTGGTGCTT
CCCGGGAAGACGTGTGGCACATCCTCGATAAGGAGTGTGTAGCAAGGCCT
ACACGACGAGTAGACGAGCTTTGCTTTCGCCCCCCAGCACACACACGCAT
TTCAAGAAACTTTGGTGGATTTCACAGAGGGTGTTTGGGTGAACTCACAA
ATTTGGAGGTTTGCTTTTTTTTTTTTTTTTTTCAACCCATCAATCGGTCG
CCCCTGTATTACTTCGCACAGCCGCTTTCAGTAAGTAAGAGTAGTGATTT
CGTTTGTCTGTTTAATGCTCATTTGCCGCTATTGCCCCTTTCTATGCGTC
GCGTGCAACCCATCTCGTAGAGCGCTTGGTTCGCTCGGTAATTCCCATGA
AGTCCACCCTAAATCACGATTTCCACGAGGTGTTGGGTAACAACACCAAG
GGCGCCGTCCGCAAGGGGGCGGAGAACCTTCTGAAGGCGGGGGAGCCTAT
CACGAGCGAGACCATCTTCCCTGCCGCCCGTCGAGTGTTTCGGAACCAGG
TTTGTCAAGGGGCACCCTGATGGGAGTTTTACAAATCATTGACATGCCGT
CGGCTATCCCCCCCCCCCTCCACTAGAGCAGAAGATAACGCAGGGGGAGT
TTGGTTATTTTTGTTTCCCTCCCCCACCACTCCCATCTTCCTGTGTTTTG
CTACATACGTGTTCTCATGTTCGATCAAAGCATAACGACTCATTTTGAAT
CCACGGCCACTGGTGCCGTATATTTCATGTATTTCATCTCTCAGGTAGTC
TGGTACATTAGGGATTCCTCTTGTAACACATTTGTTAAAGTTTTGTCTGT
TTGTTGTGTTGCACGCGAACAGCGGCCTCGAGCTGTGGTGTTGACGCGTT
CGTGTGGTGGAGCGGCACAAATAATGTTGAGCCCAAAAGAAAACATCGCA
TAACGCTTGCTGATTGGTACGTTGACCCTGGTCTTGCTTGAAATGTTTAC
ACATTGCTCTTCTCTCTGTTCCCCCATGCCAGCACTCTGCGGTGGAGGAG
ATGGTTGGCAACATGGTCATGGAGCGCACGGTGAACCCGGCAAGGCACTG
CCGGGGAACCCCCGCAAGGTCGCCTCAAGACCGCGTCCCGATGCGCACGA
TCGAGGTGTTTGGCTGCGCCCCATCCTCATTCTTCAACTTCGTAAGTTTC
TCGTTATCATTTGCTCGGTCTTGACGCGGAGGCTGTTTCTGTATGAATAT
TGGTGATCCCGTTGCAAGGAAACACGTGTTGACTCCCCCCCGCGCGCCCC
CCGCCATGAACAAGTACTTTAGAACCCACAAATCCCACTCGTAGTTGGCT
TTTTGAGGTGGCGTTGCCATGGACTTGTCAAGTTTTGCGTGTCGAGGGTG
TCCAACTAGACATTATCGATCCTCAATATCACCGAGCAATCCATGAAGCA
CAACAACTAACAAATTTCGTTTGTGTGTATTTTTTTTATTCTTCGTATTG
CACTTTCTTGTTTGGAGCCAGGTGGCTGTACCCATGCAGGCGTTTATGAT
GAACGACCTGAGGTGCAAGCTGCTCGCCGAAGTGGAGACACTTCGCAACG
CGACCCGCGCCAACGACGATGGTGGTGTGGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1279:32580..34911-

>mRNA_P-littoralis_Contig1279.7.2 ID=mRNA_P-littoralis_Contig1279.7.2|Name=mRNA_P-littoralis_Contig1279.7.2|organism=Pylaiella littoralis U1_48|type=CDS|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig1279:32580..34911- (Pylaiella littoralis U1_48)
ATGCCGAATGAGGACGTCGCCGCGTACTTCATGATAGAAGTGGGGCAGAC
GTGGTCTCCGCCGCTCAAGACGTTGATCGCCGTCAGCCTCCTCAAGGAGT
CAGGGCTACCTATCCAGGTAGGTTCTTCTGCCCCCCGCTCTGGCACCACA
AAGGCTGTGGCGGGGTCCAGGGCTGTTTACAGCCAGGCCTGCCACCTGGT
ACTGCCGTTCTTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTG
CCATTGTCGATCAACATGCTGTCGTAAAGGCAGCATACCTCCTCTACAAG
GAGGGCGGTGGCGAGCTCAACAAAGCTCAATTTTCCGAGCGCTTGGTTCG
CTCGGTAATTCCCATGAAGTCCACCCTAAATCACGATTTCCACGAGGTGT
TGGGTAACAACACCAAGGGCGCCGTCCGCAAGGGGGCGGAGAACCTTCTG
AAGGCGGGGGAGCCTATCACGAGCGAGACCATCTTCCCTGCCGCCCGTCG
AGTGTTTCGGAACCAGCACTCTGCGGTGGAGGAGATGGTTGGCAACATGG
TCATGGAGCGCACGGTGAACCCGGCAAGGCACTGCCGGGGAACCCCCGCA
AGGTCGCCTCAAGACCGCGTCCCGATGCGCACGATCGAGGTGTTTGGCTG
CGCCCCATCCTCATTCTTCAACTTCGTGGCTGTACCCATGCAGGCGTTTA
TGATGAACGACCTGAGGTGCAAGCTGCTCGCCGAAGTGGAGACACTTCGC
AACGCGACCCGCGCCAACGACGATGGTGGTGTGGAT
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