mRNA_P-littoralis_Contig1279.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1279.3.1
Unique NamemRNA_P-littoralis_Contig1279.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1279.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1279contigP-littoralis_Contig1279:3933..5260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size615
Hectar predicted targeting categoryother localisation
Exons3
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.3463185-UTR-P-littoralis_Contig1279:3932..41611680789567.3463185-UTR-P-littoralis_Contig1279:3932..4161Pylaiella littoralis U1_48UTRP-littoralis_Contig1279 3933..4161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.357103-CDS-P-littoralis_Contig1279:4161..43161680789567.357103-CDS-P-littoralis_Contig1279:4161..4316Pylaiella littoralis U1_48CDSP-littoralis_Contig1279 4162..4316 +
1680789567.365591-CDS-P-littoralis_Contig1279:4825..49811680789567.365591-CDS-P-littoralis_Contig1279:4825..4981Pylaiella littoralis U1_48CDSP-littoralis_Contig1279 4826..4981 +
1680789567.3788278-CDS-P-littoralis_Contig1279:5187..52601680789567.3788278-CDS-P-littoralis_Contig1279:5187..5260Pylaiella littoralis U1_48CDSP-littoralis_Contig1279 5188..5260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1279.3.1prot_P-littoralis_Contig1279.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1279 4162..5260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1279.3.1

>prot_P-littoralis_Contig1279.3.1 ID=prot_P-littoralis_Contig1279.3.1|Name=mRNA_P-littoralis_Contig1279.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
MITFSSSSASKVQPKAVEEQEGTGDEGLVGETSQTNGTEASPAATIETAQ
PLPPGGDHRENYVKSTSTNFSEASDDDEEGEDLNSFLKSPAPANIDETLL
GTKISCVLKAIESCKTHFAGATPKEAEI
back to top

mRNA from alignment at P-littoralis_Contig1279:3933..5260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1279.3.1 ID=mRNA_P-littoralis_Contig1279.3.1|Name=mRNA_P-littoralis_Contig1279.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1328bp|location=Sequence derived from alignment at P-littoralis_Contig1279:3933..5260+ (Pylaiella littoralis U1_48)
ATGAGACTGGTCCGTTCACACGGATATAATATACGTGAACAGATAGCGCT
TCGACGTGCTCCTGCGCAGTTGACAAACAGCCGAACCCTAACCTTACACG
GCACGTGTTCCGGCGCAACGATGATATCCGATCTCGGACACGCGATCCAA
CCTGCGGCCTTTTTACTTTCCCGCCCTGCTCTGCAAACATGGGCTTTGAA
ATGTGCACGTCGACGTTGCCGGCTTTCATATGATTACCTTCTCAAGCTCT
TCTGCGAGCAAGGTACAACCGAAGGCAGTCGAAGAACAAGAGGGAACGGG
TGACGAAGGACTCGTCGGAGAGACATCACAGACCAACGGCACTGAAGCCT
CACCAGCAGCAACCATCGAAACAGCTCAACCCCTGTGAGTATATTTATAC
ATTTTATGCTGCAAAGAGGGTGCAAAGTTCATGTCACATCATTCGACGGT
TCTTTTACTTTGTTTTTGTTCGTAAATAGTTCAGACATTCAAGCATTGCA
TTAATTCGTAGTCACTTTCAGAAATTCAAGCAATATACGCTCCTGCCAAT
CACTGTTCGAGCTCCGCACGTGAGGAACTAGATGTGAAAAACTTCTGATG
TAAGGAGGCTACAAAGTCCATATCACATCGACGGTAACTTCGGACTTTGC
ATAAGTTCATGATGAGCTCGAGATACATTCAAGCATTGTTTCATCATGTG
CGTTTCAGCGCATGTTTGATTTGTGCACGTAACCAACGAGAATAAAAATC
TGAATGAAACAGACAAGTCTCTCACACACATGCAAGCCATCTGACCCATC
ACGCATATGTACTGCGCATTGATAATTTTGCGACGTGTTCGCCTCTCTTT
GTTGCGTCTACTAATAGTTTCTGTTTTACGTGGCGTTGGTCAGGCCCCCC
GGTGGCGATCACAGGGAAAACTACGTCAAGTCAACTAGCACCAACTTCTC
CGAAGCAAGTGATGACGACGAAGAAGGTGAAGATCTCAACAGCTTTCTTA
AATCGCCTGCGCCTGCCAACATCGACGAAACGCTGTTGGGAACGAAAATG
TACGATTTGTCCTCTATGCTGTATTTAATTTGGTCGGGTAATTTTCAGTA
ATTTTGATCGCGATGCCGAAAAGGAAGACTGTGTTTTGATTAGACGGAAA
ACTTCTGCGAATACACTACACCTCATCGCCACAAAGCAAACCCGATCCTC
TAACAAATTCCACTTTCGTGTCTTCCGATCGTGCGTCCTCCTTGACCTAT
CACAGATCCTGCGTCCTGAAAGCGATCGAGAGCTGCAAGACACATTTCGC
TGGCGCGACGCCCAAGGAGGCAGAAATC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1279:3933..5260+

>mRNA_P-littoralis_Contig1279.3.1 ID=mRNA_P-littoralis_Contig1279.3.1|Name=mRNA_P-littoralis_Contig1279.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig1279:3933..5260+ (Pylaiella littoralis U1_48)
ATGATTACCTTCTCAAGCTCTTCTGCGAGCAAGGTACAACCGAAGGCAGT
CGAAGAACAAGAGGGAACGGGTGACGAAGGACTCGTCGGAGAGACATCAC
AGACCAACGGCACTGAAGCCTCACCAGCAGCAACCATCGAAACAGCTCAA
CCCCTGCCCCCCGGTGGCGATCACAGGGAAAACTACGTCAAGTCAACTAG
CACCAACTTCTCCGAAGCAAGTGATGACGACGAAGAAGGTGAAGATCTCA
ACAGCTTTCTTAAATCGCCTGCGCCTGCCAACATCGACGAAACGCTGTTG
GGAACGAAAATATCCTGCGTCCTGAAAGCGATCGAGAGCTGCAAGACACA
TTTCGCTGGCGCGACGCCCAAGGAGGCAGAAATC
back to top