mRNA_P-littoralis_Contig1278.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1278.1.1
Unique NamemRNA_P-littoralis_Contig1278.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1278.1.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.020e-42
Identity = 73/148 (49.32%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:   16 GQVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRQARQT-IACTKYAY----GHGDNRPDWVFTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSRTRGQWLKDNPPSLTIVLPRVVYRGKKCNVPEAWFMWY 444
            G+V+ ++ ++ + G VLD CGS  DA+  +L      V TND N R    T +  T   +         RPDW+ TSPPY NAF+IL +AL V +VGV FKLRLSFLEP++TRG+WLKDNPPS  +VLPR  Y G+ C+  EAWF+W+
Sbjct:   13 GKVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160
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BLAST of mRNA_P-littoralis_Contig1278.1.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.140e-16
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  286 VGVVFKLRLSFLEPSRTRGQWLKDNPPSLTIVLPRVVYRGKKCNVPEAWFMWYT 447
            +GV FKLRL+FL P+++RG+WLKDNPP   ++LPR  YR ++C+  E WF+W T
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54
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BLAST of mRNA_P-littoralis_Contig1278.1.1 vs. uniprot
Match: A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR)

HSP 1 Score: 66.2 bits (160), Expect = 1.900e-10
Identity = 45/144 (31.25%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:   43 LDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDIN--SRQARQTIACTKYAYGH---GDNRPDWVFTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSRTRGQWLKDNPPSLTIVL----PRVVYRGKKC--NVPEAWFMW 441
            +D G  +L+ C    D +  +L      V  +DI+      + T   T+  + H      R +WV T+PP+  A AIL  A   A VGV F LRLS+LEP++ RG W  ++  +++ ++    PR  + G +   +V  AW +W
Sbjct:   34 IDPGVTILEPCAGEGD-ILNVLQYYNVGVVASDISWQPHPGQTTTDATERLFWHYWKNRLRFEWVITNPPFNEASAILPLAYKHASVGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVW 176
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BLAST of mRNA_P-littoralis_Contig1278.1.1 vs. uniprot
Match: A0A2W4YX34_9CYAN (Uncharacterized protein n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2W4YX34_9CYAN)

HSP 1 Score: 61.2 bits (147), Expect = 1.420e-8
Identity = 45/166 (27.11%), Postives = 69/166 (41.57%), Query Frame = 1 
Query:    1 YRHPFGQVNDMMAHLDVGGLVLDCCGS---------TRDAVCRLLTERGFRVQTNDINSRQARQTIACTKYAYGHGDNRP-DWVFTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSRTRGQWLKDNPPSLTIVL---PRVVYRG---KKCNVPEAWFMWYTG 450
            Y  P G    ++  + + G V +CC             D+  RL+ +      + +   R A +      +A       P DW  T+PP+  A  IL  A   ++ G  F LRLS+LEP+  R  WL +    L  ++   PR  +R    K  +V  AW +W  G
Sbjct:   27 YPTPEGVTRSLLNRVPITGTVFECCAGHGAISDILELTDSTERLVLQSDLSWPSPNGELRDATEQRFWESWATLEAGGSPIDWTVTNPPFCEAEQILPLAWEYSRQGCAFLLRLSYLEPTAGRADWLNEMADHLRYLITLNPRPKFRRDTKKTDSVTAAWLVWEKG 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1278.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE1.020e-4249.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T5_9PHAE2.140e-1655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A433N1N0_CHLFR1.900e-1031.25Uncharacterized protein n=1 Tax=Chlorogloeopsis fr... [more]
A0A2W4YX34_9CYAN1.420e-827.11Uncharacterized protein n=1 Tax=Phormidesmis pries... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1278contigP-littoralis_Contig1278:5510..6394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog102129.Lepto7375DRAFT_7442
PFAMsAcyltransferase,MMPL,Methyltransf_21,Methyltransf_25,Methyltransf_31
Model size450
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.71e-13
EggNOG OGsCOG2813@1|root,COG2813@2|Bacteria,1GAGN@1117|Cyanobacteria,1HHWT@1150|Oscillatoriales
DescriptionSpecifically methylates the guanine in position
Cds size420
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.2403846-CDS-P-littoralis_Contig1278:5509..57731680789567.2403846-CDS-P-littoralis_Contig1278:5509..5773Pylaiella littoralis U1_48CDSP-littoralis_Contig1278 5510..5773 -
1680789567.2564316-CDS-P-littoralis_Contig1278:6208..63641680789567.2564316-CDS-P-littoralis_Contig1278:6208..6364Pylaiella littoralis U1_48CDSP-littoralis_Contig1278 6209..6364 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.2672238-UTR-P-littoralis_Contig1278:6364..63941680789567.2672238-UTR-P-littoralis_Contig1278:6364..6394Pylaiella littoralis U1_48UTRP-littoralis_Contig1278 6365..6394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1278.1.1prot_P-littoralis_Contig1278.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1278 5510..6364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1278.1.1

>prot_P-littoralis_Contig1278.1.1 ID=prot_P-littoralis_Contig1278.1.1|Name=mRNA_P-littoralis_Contig1278.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRQARQTIACT
KYAYGHGDNRPDWVFTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPS
RTRGQWLKDNPPSLTIVLPRVVYRGKKCNVPEAWFMWYTG
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mRNA from alignment at P-littoralis_Contig1278:5510..6394-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1278.1.1 ID=mRNA_P-littoralis_Contig1278.1.1|Name=mRNA_P-littoralis_Contig1278.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=885bp|location=Sequence derived from alignment at P-littoralis_Contig1278:5510..6394- (Pylaiella littoralis U1_48)
TATCGGCATCCCTTCGGACAGGTGAACGACATGATGGCCCACTTGGACGT
CGGTGGTCTTGTTCTTGACTGCTGCGGGAGCACGAGAGATGCCGTGTGTC
GGCTGTTGACAGAAAGAGGCTTTCGTGTTCAGACGAACGACATCAACAGC
AGGCAAGCGAGACAGACAATTGCATGTACTAAATACGTTCAACGGCAGTG
CAAACCAATTATCCGATGCCGCTCTCTCGTCCACGTGCTACACGTAATGG
TGTGATATATCGCAAGGGCGGGATGATAAAAATAGGCGAAACAAATGTTT
TACCTCCTGAAGGATAACACTGCTTTTCCTCAACGTTGGCGATTCTTGAT
TTACGTTAGGCGACCCAAAATGCCCTGATGTTTGAGCCGACAAACCTCGG
AAGAAAGCTTTTTTTTTTAGGTCATCGCCTGCGGAGGCTAAGCCTTTCTG
ATAGGGTTGGTGATCATGGTGTACACGATACCAAATTCGCCACAGGCTCA
CAAATATTCGCATACACGATCCACGTTCTTTCTGTCGCCTACGCGTGCAT
GCCTGTTTCGTTCCCTCACGACAGACTGCCAGCGGACACACCTCGATGCG
TCGGGTGCAGATTTTATGCAGGCGTACGGGCATGGAGATAATCGCCCCGA
CTGGGTTTTCACGAGCCCCCCATACAAAAATGCCTTCGCCATCCTGAAGC
AGGCACTGCATGTAGCTCAAGTCGGCGTTGTTTTCAAGCTCAGGCTGTCG
TTCCTCGAGCCTTCTAGAACTCGCGGACAGTGGTTGAAAGACAACCCACC
TTCTCTCACGATAGTTCTGCCCCGCGTAGTTTACCGGGGTAAGAAATGTA
ATGTCCCGGAGGCATGGTTTATGTGGTACACTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1278:5510..6394-

>mRNA_P-littoralis_Contig1278.1.1 ID=mRNA_P-littoralis_Contig1278.1.1|Name=mRNA_P-littoralis_Contig1278.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1278:5510..6394- (Pylaiella littoralis U1_48)
ATGATGGCCCACTTGGACGTCGGTGGTCTTGTTCTTGACTGCTGCGGGAG
CACGAGAGATGCCGTGTGTCGGCTGTTGACAGAAAGAGGCTTTCGTGTTC
AGACGAACGACATCAACAGCAGGCAAGCGAGACAGACAATTGCATGTACT
AAATACGCGTACGGGCATGGAGATAATCGCCCCGACTGGGTTTTCACGAG
CCCCCCATACAAAAATGCCTTCGCCATCCTGAAGCAGGCACTGCATGTAG
CTCAAGTCGGCGTTGTTTTCAAGCTCAGGCTGTCGTTCCTCGAGCCTTCT
AGAACTCGCGGACAGTGGTTGAAAGACAACCCACCTTCTCTCACGATAGT
TCTGCCCCGCGTAGTTTACCGGGGTAAGAAATGTAATGTCCCGGAGGCAT
GGTTTATGTGGTACACTGGT
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