mRNA_P-littoralis_Contig1277.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1277.11.1
Unique NamemRNA_P-littoralis_Contig1277.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1277.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1277contigP-littoralis_Contig1277:24773..25169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size397
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.1383066-UTR-P-littoralis_Contig1277:24772..248281680789567.1383066-UTR-P-littoralis_Contig1277:24772..24828Pylaiella littoralis U1_48UTRP-littoralis_Contig1277 24773..24828 -
1680789567.1624265-UTR-P-littoralis_Contig1277:25149..251691680789567.1624265-UTR-P-littoralis_Contig1277:25149..25169Pylaiella littoralis U1_48UTRP-littoralis_Contig1277 25150..25169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.149221-CDS-P-littoralis_Contig1277:24828..251491680789567.149221-CDS-P-littoralis_Contig1277:24828..25149Pylaiella littoralis U1_48CDSP-littoralis_Contig1277 24829..25149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1277.11.1prot_P-littoralis_Contig1277.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1277 24829..25149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1277.11.1

>prot_P-littoralis_Contig1277.11.1 ID=prot_P-littoralis_Contig1277.11.1|Name=mRNA_P-littoralis_Contig1277.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MTHSRFSWTIITRGLLLNTPTRFLHFSAHGRAFARRTVLVTDMQQHVAFL
CMPSRRVCERHVILSPSFIFLIALLGSPDTDVYLRFKYGTHQHVLPCLPC
ELPQAA*
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mRNA from alignment at P-littoralis_Contig1277:24773..25169-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1277.11.1 ID=mRNA_P-littoralis_Contig1277.11.1|Name=mRNA_P-littoralis_Contig1277.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=397bp|location=Sequence derived from alignment at P-littoralis_Contig1277:24773..25169- (Pylaiella littoralis U1_48)
CCGTCACGTGCGCGGACGGCATGACACACTCTCGTTTTTCCTGGACTATC
ATAACCCGTGGACTGCTTCTAAACACGCCAACTCGTTTTCTCCATTTCTC
TGCTCACGGACGAGCTTTTGCCCGGCGCACCGTCCTTGTTACTGACATGC
AGCAACATGTCGCATTCCTCTGTATGCCATCCCGTCGCGTTTGCGAACGG
CATGTCATACTCTCGCCTTCTTTTATTTTTCTAATCGCTCTCCTGGGCAG
TCCCGACACCGACGTGTATCTTCGTTTCAAGTATGGCACTCACCAGCACG
TCTTGCCATGTTTACCGTGCGAGTTACCGCAGGCAGCATGATGAATTCCA
TAATGGTCTTCCCGCATGAACCAAACAGCCACTCTCGCTGCTGCATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1277:24773..25169-

>mRNA_P-littoralis_Contig1277.11.1 ID=mRNA_P-littoralis_Contig1277.11.1|Name=mRNA_P-littoralis_Contig1277.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig1277:24773..25169- (Pylaiella littoralis U1_48)
ATGACACACTCTCGTTTTTCCTGGACTATCATAACCCGTGGACTGCTTCT
AAACACGCCAACTCGTTTTCTCCATTTCTCTGCTCACGGACGAGCTTTTG
CCCGGCGCACCGTCCTTGTTACTGACATGCAGCAACATGTCGCATTCCTC
TGTATGCCATCCCGTCGCGTTTGCGAACGGCATGTCATACTCTCGCCTTC
TTTTATTTTTCTAATCGCTCTCCTGGGCAGTCCCGACACCGACGTGTATC
TTCGTTTCAAGTATGGCACTCACCAGCACGTCTTGCCATGTTTACCGTGC
GAGTTACCGCAGGCAGCATGA
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