mRNA_P-littoralis_Contig1276.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1276.6.1
Unique NamemRNA_P-littoralis_Contig1276.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1276.6.1 vs. uniprot
Match: D7FU19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU19_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.700e-20
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 2 
Query:  104 MIIHTVVTSLAPIQTYHQQRRGAKGKRAIPPAPPPDMLSGGGRQVLASYTEFSYQGNFSDVACRLMDNLPHQSPAVG 334
            M+IHT V SLAP Q    + R  + ++A+   PP D LSGG R+VLASYT FSYQGNFSDV CRLMD LPHQSPA G
Sbjct:    1 MLIHTAVASLAPRQA--MRHRKGRQRKAVSLTPPSDFLSGGDREVLASYTAFSYQGNFSDVVCRLMDTLPHQSPASG 75
[Close]
BLAST of mRNA_P-littoralis_Contig1276.6.1 vs. uniprot
Match: A0A6H5KR82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR82_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.970e-19
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2 
Query:  104 MIIHTVVTSLAPIQTYHQQRRGAKGKRAIPPAPPPDMLSGGGRQVLASYTEFSYQGNFSDVACRLMDNLPHQSPAVG 334
            M+IHT V SLAP Q   +QR+G + ++A+   PP D LSGG R+VLASYT FSYQGNFSDVACRL+D LPHQSP+ G
Sbjct:    1 MLIHTAVASLAPRQAM-RQRKGRQ-RKAVSLTPPSDFLSGGDREVLASYTAFSYQGNFSDVACRLIDTLPHQSPSSG 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1276.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU19_ECTSI2.700e-2063.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR82_9PHAE3.970e-1964.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1276contigP-littoralis_Contig1276:21306..25746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size847
Hectar predicted targeting categoryother localisation
Exons2
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789566.9377677-UTR-P-littoralis_Contig1276:21305..216171680789566.9377677-UTR-P-littoralis_Contig1276:21305..21617Pylaiella littoralis U1_48UTRP-littoralis_Contig1276 21306..21617 -
1680789566.9762506-UTR-P-littoralis_Contig1276:25643..257461680789566.9762506-UTR-P-littoralis_Contig1276:25643..25746Pylaiella littoralis U1_48UTRP-littoralis_Contig1276 25644..25746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789566.9510148-CDS-P-littoralis_Contig1276:21617..218181680789566.9510148-CDS-P-littoralis_Contig1276:21617..21818Pylaiella littoralis U1_48CDSP-littoralis_Contig1276 21618..21818 -
1680789566.9649677-CDS-P-littoralis_Contig1276:25412..256431680789566.9649677-CDS-P-littoralis_Contig1276:25412..25643Pylaiella littoralis U1_48CDSP-littoralis_Contig1276 25413..25643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1276.6.1prot_P-littoralis_Contig1276.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1276 21618..25643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1276.6.1

>prot_P-littoralis_Contig1276.6.1 ID=prot_P-littoralis_Contig1276.6.1|Name=mRNA_P-littoralis_Contig1276.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MIIHTVVTSLAPIQTYHQQRRGAKGKRAIPPAPPPDMLSGGGRQVLASYT
EFSYQGNFSDVACRLMDNLPHQSPAVGEVLVRQVKRDGDNVGDCLARTVR
SCIQYNASKDLGAVGPGDQFTRGACMKAAMAMFSGDGNGGTPV*
back to top

mRNA from alignment at P-littoralis_Contig1276:21306..25746-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1276.6.1 ID=mRNA_P-littoralis_Contig1276.6.1|Name=mRNA_P-littoralis_Contig1276.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4441bp|location=Sequence derived from alignment at P-littoralis_Contig1276:21306..25746- (Pylaiella littoralis U1_48)
GCTGTCTGCATCTCCTAGCCAGCAAGCGCATCGAAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGATAGGAGAGAACCTTGATACACACCGTCATAGAGAG
AAAATGATAATCCACACGGTGGTGACGTCCCTGGCGCCTATACAAACGTA
TCATCAGCAACGAAGAGGGGCGAAAGGGAAGAGAGCGATACCGCCGGCGC
CACCGCCGGATATGCTCTCCGGCGGCGGGAGGCAGGTGCTTGCCTCATAT
ACGGAGTTCAGCTACCAGGGAAACTTTTCGGACGTGGCGTGCCGGCTCAT
GGACAATCTGCCTCACCAGTCGCCGGCAGTAGGGGTGAGTCGAGCGACAG
CAATTGTCTTGCGTATGATATCATCCGTCCATACCACGGGCTAGATTTTG
GCGATGAGCTAATGTGAGAATCAACAACATCAACAACATATTACAGAAAT
ACCAGGTTATTTTTATTTTATTTTCTTATTTGCCGGTCGCCCCGGTGGTT
CAGTTGGTAAGCCAAGTAATCTTCTGACATTCACGAGTGAGTCCGAATCC
CTGTGCAGTAACACTATTTGGGTTTTCTTCTCACAATGCGCGTGAAAGTG
GAAAGCGATTAGTTCGTGAGTTAACAAAAACTCGATCGTACCATCGACAA
GGGAAAGGGAATTGCTGTCCCCTTTCTCGCGGTAAAAGCTCTACCAAACA
AGGCAAGCACAGCAGAGGGAAGTGAAAAAAAAAAAAATGAAAATCCTGTG
TTGACTTCCCGCTGTGTGACCCCGGTTGGAGCGTCGACCTACCCGAAAGG
TGTAGAGTGGCGTCCAATGAAAGGGACGACAACACACACACACACACACA
CACACACACACAACATATTTGTTCGCGAAGTACTTCGTACTTCGAAGTAC
TCGGAGTATATCATAGCAGCGTCGAGCTTTTTTTTTCTTTTCATCTCGAA
ACTTCGAAGTATATTTCAGATTTCTTCTTTTCGTTCGAAAAGGCTTCTTT
CTATACATTGACCATCTTCCTCCTGTCAAGTATAGGTGATGGTATTCCAG
AAGCATTTTGTGGCTTGCTTCTACGGTCCGGTCCGTCCAAAACAATTTCC
GTCATTTGTCACACCCCTCTTGGGTACACTTTTCTCGGGCTGTGCGTAGT
TGTCCAGAAACGTAAAAACACCCGCAAGAGCCCTCCCTGTCTCAAGGCCG
AAAAATCTGTGGATTTTATTTTTTATTTTTTTCGTTCCTCGTCTCTCTAG
GTCGAAAAAACCGTTTATATCGTTCGCTTTTTATCGAGTGCGGCAAACGC
TCCATCGTGTCAATACCTGGAGTTTTTTTTTGTTTTCCGAGGAAAACGAA
TTTTTCTCGAGATATTGAGGAAAAACTAAATTTGGCACCCCTTTTGCTTC
GCTTTTTTTGGCGAGAACCAACCCATTGATTTTCAAAAAGAGTGCGGCAA
ACGCTTCCTCTCATCAATACCTGGAGTTTTTTTTTGTTTTTCTTGGAAAA
CGATACTTGTACGGAGTATTTCTCGAGATACCAAGGTTCTAGGGAATTTT
AGCTGATTTTTAGCTGATTTTTGTTTTTTTGTACCATGTAAATGTAAATC
AAAATGACTTGAAATTAGGGATGATCCTAAAAAAATTATTAAACAGCGAT
CTCTCGGCCTTTTCCTGGCGATCACTCCTAGTGTGTGTGTTGTCATCCCA
TATTCTCTGGCACACTAGTCTGCAAACTACAGGCTAGGCCCATCGACGGG
GTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTC
TGCGGTACATGCGTGAGATTTTTTCTCGCGAGCAGGGGTCCGCGGTCCCT
ACCCTCGTCGGCGAAGCCGAATCTGATTTTACTAACAGCATAGCCGCTTT
CAAAGTAGCAAAGGTGCTGGTTTGCGTCTCAATTCGTTTTTGTTCAAAAG
TGATAACGAAAACACAAATTACGGAAATTGTCCTCTATGAACCATATATA
TGAGATACTTGAATGATTACAGCAGTGTGAGTTCACAAGCATATCATATG
ATGAAACCAGAGGGTGCAGGTGTGCAGATCAATACTTGTAGAAAAGATAA
TTTGCTTTCCCGCACCTGCGGCGGGAGGGTTTTGTATAGCAGTGGGGGTT
GCGGTTTAAGAGAGCTCAGTTTAAGAGGAATTAGTGTCTAAGCGGGTTCT
TTTTTGTTGAGAAAATTTGACATGATTTTCATGAAACGGCTGCCGATTCA
TCGAATGTTCGAGGCGTTTCTCTGAAAAAACAAAAAACAAGGCTATCATG
ACACCTGCACTCAGGTTCACAGCAGTACTTCGAATAGGCGTCAAGCACGA
CGCCTGTACTCCTGAACAACTACGATTCCCACGATAACTTAGCGATATCA
TGGAGTCTAGCACTGAGCCTGTAGCAACACGGGCTCGAGCTTCGATCGAG
GGGGTTGTATTTGGCGCCGGTGGCTGTGCAGAGTGCGTGCCCTCAGCTCA
AACCGGAAACGACAGCAGCAGCAGCAGCAGCAGCCTTGCCGCGAACGCCA
GGCTTTCAGCAGTCACTGCTGCCGAAGGTTCACCTGTTGCCGCCAACGAG
ATAGCCAACGCACCAGTCACTGCTGCTGTCGACCTGTCTGCTGCCGGTCC
TATCGAGGATGGGATGGCAGGTGGGGAAGGTGGTGGCAACAGTCAGCTGG
GGTGTGGTGAGGATGAGCCAGCTGCTCTGGACGGTGTCGAAGGTGGCCAC
AGCAATCAGGTGGAGGATGATGGGGGGCAGCCTGTTGCACTGGAGGGTTT
AGAAGGCGCCCCACAACACAGCCAGCTTGCCACAGGGGCGGCGGAGGCGC
TTTTGGAGTTCGTGAAGGAGAGCCCAGGCAGAGTGCGTGGGTACCTCGAG
CTTGAAGCACAGGAAGGAGCAAACTCTGTCTGCACGCACCCAAGAGACTC
CGCTCTGAAGAGGTAGAGCAAGCAACGTCCTCGCGAGGCGACAGCATGCG
GCTGGCACCAAGCTAGCCGGGTCGCTGGCATAACAATGCAGGTGCGTGTC
AGCGGATACATCCAGCAGTAGGACGCCAGGGTCACACAAAACAGGGTCTT
GCCTCGGGATTGCAATCAGTACGGCTGTGATGAAGCTGAAACCCGTGTTT
ATTGATTGTTTTCCAAATCTAAACACAGCAGCACTGGTAGAGGAATACAT
TACAGAACATGATATCATATCATATCATACACCGGTAATATCGGACATGA
ACGCAGTTATGCACACGGCAGTATTACCGCTGTAGCACGCATAGCCCGAA
CGTGCTTAAAACGATGTTTGTTGTGTGGGTAATTAGGTTGGGTATTTGTT
GAAAATCAAACTGTTTTACACCGGCATACTTCTATTTTTGTACAGCGTTG
TGTGATTTCTCGGGGTCCGTTTTTGTTTTCGCCGGAGTCTCCTTGTCGTG
CCTTTATTTGGTGGACTGAGAGGATCTCCCGAGTACTACATACCTCTTTT
GGGGCAAGCAGCCTGTGACCACGGAAATCGTACCTGATCGGTGGAGTACG
GACATTAGAAGGTACTGAGGAGAGATCGGAATGGTTTTTAATGTGAAGAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATACT
GCTGTCTGTACAGGTGGGAGATTGGTCCAGTTTTGGGCCGCGTTTTCAAA
CATCAACCACTTGCAGAAGATGTCTACGAGTACGAAAGTACATAATTATA
CAGCAGCAGCGGTGGACTGCGGAAACAGAAACCCCACCCCCTCTCGAATA
CGCCTACTTGCGCAGCTATCTGTAAGACTCCAGCAGGACGAGTAAAGCTC
TGTAATATGGAACCGCATCATTTTTGGCTCCAAGTTCCCGCATGCATTGC
GTGCTCCCCTTGTTGCTATTGTATGCAGGAAGTGCTGGTCAGACAGGTGA
AACGCGACGGGGATAACGTCGGAGATTGCCTCGCGCGCACCGTCCGTTCT
TGCATCCAGTACAACGCCTCCAAGGATTTGGGCGCTGTTGGACCGGGGGA
TCAGTTCACCCGGGGGGCTTGTATGAAGGCAGCCATGGCAATGTTCAGCG
GTGACGGAAACGGTGGCACTCCCGTTTAAGTTGTTGCGGCTCTATCCATG
TACTGATGAATCTTGCCTAGAGTAGTTTAGGGGGCGTGAGTTGGGCTTGG
TGTGCAAAAACAAATTGACCGCCTGCGTTATGTTGCAGCACTTGCGCACT
GTCTGTTTGCTGCCATCGAACGCTGAACCACGTCAGGGGCGCACATCTCG
ATTCGTTTCCGTTGAAGCACCTGTTTATGAAAGCTGCATGTGCTGCCGAA
AGCAGCTTTGCTTTGAAAGGGGATAAAGGTTGGAGAGTAAAACGCAGGTT
TCTGAAGAAAGATCATGATGTGGAAGCGTCAGCGCTGCACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1276:21306..25746-

>mRNA_P-littoralis_Contig1276.6.1 ID=mRNA_P-littoralis_Contig1276.6.1|Name=mRNA_P-littoralis_Contig1276.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1276:21306..25746- (Pylaiella littoralis U1_48)
ATGATAATCCACACGGTGGTGACGTCCCTGGCGCCTATACAAACGTATCA
TCAGCAACGAAGAGGGGCGAAAGGGAAGAGAGCGATACCGCCGGCGCCAC
CGCCGGATATGCTCTCCGGCGGCGGGAGGCAGGTGCTTGCCTCATATACG
GAGTTCAGCTACCAGGGAAACTTTTCGGACGTGGCGTGCCGGCTCATGGA
CAATCTGCCTCACCAGTCGCCGGCAGTAGGGGAAGTGCTGGTCAGACAGG
TGAAACGCGACGGGGATAACGTCGGAGATTGCCTCGCGCGCACCGTCCGT
TCTTGCATCCAGTACAACGCCTCCAAGGATTTGGGCGCTGTTGGACCGGG
GGATCAGTTCACCCGGGGGGCTTGTATGAAGGCAGCCATGGCAATGTTCA
GCGGTGACGGAAACGGTGGCACTCCCGTTTAA
back to top