mRNA_P-littoralis_Contig1272.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1272.12.1
Unique NamemRNA_P-littoralis_Contig1272.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1272.12.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.400e-31
Identity = 68/88 (77.27%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 MSRRCVSVLLLVCIAQACLAFVPSWTATLRSSRSQPPASTPPAATSSLSQPSGATFLVFGTFGACGAHMVYPVRGITSLSALSEGNEE 264
            MSR CVSVLLLV IAQACLAFVPSWTAT RSSRSQPPASTP AAT SLSQPSG    VFG    CGA   YPV G+TSLSA+SEG EE
Sbjct:    1 MSRNCVSVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEE 88
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1272.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM56_ECTSI3.400e-3177.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1272contigP-littoralis_Contig1272:37775..38053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size279
Hectar predicted targeting categorychloroplast
Exons1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789566.1340318-CDS-P-littoralis_Contig1272:37774..380531680789566.1340318-CDS-P-littoralis_Contig1272:37774..38053Pylaiella littoralis U1_48CDSP-littoralis_Contig1272 37775..38053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1272.12.1prot_P-littoralis_Contig1272.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1272 37775..38053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1272.12.1

>prot_P-littoralis_Contig1272.12.1 ID=prot_P-littoralis_Contig1272.12.1|Name=mRNA_P-littoralis_Contig1272.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
MSRRCVSVLLLVCIAQACLAFVPSWTATLRSSRSQPPASTPPAATSSLSQ
PSGATFLVFGTFGACGAHMVYPVRGITSLSALSEGNEEGAAAI
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mRNA from alignment at P-littoralis_Contig1272:37775..38053+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1272.12.1 ID=mRNA_P-littoralis_Contig1272.12.1|Name=mRNA_P-littoralis_Contig1272.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig1272:37775..38053+ (Pylaiella littoralis U1_48)
ATGTCAAGGCGTTGTGTGTCAGTTCTTCTCCTGGTGTGTATCGCACAAGC
ATGTCTGGCCTTCGTCCCGAGCTGGACTGCGACGTTGAGGTCGTCACGCT
CACAGCCCCCTGCTTCAACGCCTCCTGCAGCAACGTCTTCGCTCTCGCAG
CCCTCTGGTGCGACCTTCCTTGTGTTCGGGACGTTTGGCGCTTGTGGGGC
GCACATGGTTTACCCGGTGCGAGGGATCACGAGCTTGAGCGCGCTGAGCG
AGGGCAATGAGGAGGGGGCGGCGGCGATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1272:37775..38053+

>mRNA_P-littoralis_Contig1272.12.1 ID=mRNA_P-littoralis_Contig1272.12.1|Name=mRNA_P-littoralis_Contig1272.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig1272:37775..38053+ (Pylaiella littoralis U1_48)
ATGTCAAGGCGTTGTGTGTCAGTTCTTCTCCTGGTGTGTATCGCACAAGC
ATGTCTGGCCTTCGTCCCGAGCTGGACTGCGACGTTGAGGTCGTCACGCT
CACAGCCCCCTGCTTCAACGCCTCCTGCAGCAACGTCTTCGCTCTCGCAG
CCCTCTGGTGCGACCTTCCTTGTGTTCGGGACGTTTGGCGCTTGTGGGGC
GCACATGGTTTACCCGGTGCGAGGGATCACGAGCTTGAGCGCGCTGAGCG
AGGGCAATGAGGAGGGGGCGGCGGCGATC
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