mRNA_P-littoralis_Contig1272.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1272.4.1
Unique NamemRNA_P-littoralis_Contig1272.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1272.4.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 2.150e-54
Identity = 121/288 (42.01%), Postives = 161/288 (55.90%), Query Frame = 1 
Query:   13 KDGTPYEDDFKDVVTGIDGTSVIIGGYTYGSWVETNLDAEGADQDIVGMSMDGDGTLLWTYQPVATDSNDCTSVAVSPDGAALLVGWTDDDFLEGTTNYYTDFAGVMIETGSGSPAGSTTFTPAPGASPSLTPAPFEATPTPPGPTLSPFKAPSTXXKTPAPESSPQQXSAGTPXXIASSPSSCGATESFQVTSDGLPEIEGCFQATDASFSKLGSNLEVWTVSGDISFDQVAVIGYS---ADENEQVDTPYNVTYITNDDDATTVYCYSSENAITVHPSDATWQCKI 867
            +DGTPY+D F+   TGIDGTS++  GYTYG+W     + E  D D VGMSMDGDGTLLWTYQ   T       V VSPDGAALL G++   + + TT++Y DFAGV+I TG+                         ATP           AP+T             X   T     +S  SCG  ESF++TSD LP +EGC+Q TD SF + G   E +TVSG   ++ +A++G S   AD++  V  P+ + +++ +DD T VYC S+E+A+TVHP DATW C +
Sbjct:  302 QDGTPYDDGFEGAATGIDGTSMVFVGYTYGTWAAEQAEDE-EDSDAVGMSMDGDGTLLWTYQAGTTGFETFVGVDVSPDGAALLAGYSTGTWEDSTTDFYADFAGVLIATGA-----------------------VPATP-----------APATVIAX-------XXXXXXTGTSGGTSEGSCGDGESFRITSDVLPVVEGCYQQTDWSFDE-GDEYEEYTVSGMSGWEHIAILGMSSAFADDDGDVIMPFYLAFVSEEDDGTIVYCVSNEDAVTVHPVDATWTCDL 546
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BLAST of mRNA_P-littoralis_Contig1272.4.1 vs. uniprot
Match: D7FIH4_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH4_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.560e-38
Identity = 98/239 (41.00%), Postives = 131/239 (54.81%), Query Frame = 1 
Query:   13 KDGTPYEDDFKDVVTGIDGTSVIIGGYTYGSWVETNLDAEGADQDIVGMSMDGDGTLLWTYQPVATDSNDCTSVAVSPDGAALLVGWTDDDFLEGTTNYYTDFAGVMIETGSGSPAGSTTFTPAPGASPSLTPAPFEATPTPPGPTLSPFKAPSTXXKTPAPESSPQQXSAGTPXXIASSPSSCGATESFQVTSDGLPEIEGCFQATDASFSKLGSNLEVWTVSGDISFDQVAVIGYSA 729
            +DGTPY++ F+ V TGIDGTS++  GYT+G+W     + E  D D VGMSMDGDGTLLWTYQ   T+ ++   V V PDGAALL G++   + + T ++Y DFAGV+IETG+  PA     TPAP     +TP+             +PF    T   T                    S  SCG  ESF +TSD LP ++GC+Q T  SF   G   E +TVSG   ++ + + G S+
Sbjct:  245 QDGTPYDESFEGVATGIDGTSMVFAGYTFGTWAAAQAEDED-DMDAVGMSMDGDGTLLWTYQAGTTNHDNFIGVDVGPDGAALLAGFSAGTWEDPTADFYADFAGVLIETGA-VPA-----TPAPADDIVITPS-------------TPFPVTGTSGDT--------------------SEGSCGDGESFLITSDVLPVVQGCYQQTTLSFDD-GGQYEEYTVSGLTEWEHITMFGSSS 442
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BLAST of mRNA_P-littoralis_Contig1272.4.1 vs. uniprot
Match: D7FIH5_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 2.530e-38
Identity = 103/240 (42.92%), Postives = 133/240 (55.42%), Query Frame = 1 
Query:   13 KDGTPYEDDFKDVVTGIDGTSVIIGGYTYGSWVETNLDAEGADQDIVGMSMDGDGTLLWTYQPVATDSNDCTSVAVSPDGAALLVGWTDDDFLEGTTNYYTDFAGVMIETGSGSPAGSTTFTPAPGASPSLTPAPFEATPTPPGPTLSPFKAPSTXXKTPAPESSPQQXSAGTPXXIASSPSSCGATESFQVTSDGLPEIEGCFQATDASFSKLGSNLEVWTVSGDISFDQVAVIGYSAD 732
            +DGT Y++ F+ V TGIDGTS++  GYT+G+W     + E  D D VGMSMDGDGTLLWTYQ   T  ++   V V PDGAALL G++   + + T + Y DFAGV+IETG+  PA     TPAP     +TP+                        TP+P       S GT      S  SCG  ESF +TSD LP +EGCFQ T   FS  G   E ++VSG   +DQV++ G S++
Sbjct:  299 QDGTLYDESFEGVATGIDGTSMVFAGYTFGTWAAAQAEDED-DMDAVGMSMDGDGTLLWTYQAGTTSYDNFIGVDVGPDGAALLAGFSQGAWEDPTADSYADFAGVLIETGA-VPA-----TPAPADDIVITPS------------------------TPSPVIG---TSGGT------SEGSCGDGESFLITSDALPAVEGCFQNTQQLFSN-GDEYEEYSVSGTSDWDQVSMFGGSSE 497
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BLAST of mRNA_P-littoralis_Contig1272.4.1 vs. uniprot
Match: A0A6H5JQX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.770e-23
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:  541 IASSPSSCGATESFQVTSDGLPEIEGCFQATDASFSKLGSNLEVWTVSGDISFDQVAVIGYSADENEQVD--TPYNVTYITNDDDATTVYCYSSENAITVHPSDATWQCKI 867
            IA S  +CG TESFQ+ S  LP+++GCFQAT   FS   S  E W+++G+  F+ + V      + E+ D  TP+ + +++ DDDAT VYCYS+E  I VHP+DATWQ K+
Sbjct:   81 IAPSSPTCGDTESFQIISSELPDVQGCFQATSTLFSTPESTEEYWSLTGEAEFESILVASILDLDTEEEDDSTPWYLVFLSADDDATVVYCYSNEQGILVHPTDATWQSKM 191
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BLAST of mRNA_P-littoralis_Contig1272.4.1 vs. uniprot
Match: D7G0B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B7_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 9.920e-22
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:  532 PXXIASSPSSCGATESFQVTSDGLPEIEGCFQATDASFSKLGSNLEVWTVSGDISFDQVAVIGYSADENEQVD---TPYNVTYITNDDDATTVYCYSSENAITVHPSDATWQCKI 867
            P  IA S  +CG TESFQ+ S  LP+I+GCFQAT   FS   S  E W+++G+  F+ + ++G   DE+ + +   TP+ + +++ DDDAT +YCYS+E  I VHP+DATW+C +
Sbjct:  540 PPEIAPSSPTCGDTESFQIISSELPDIQGCFQATSTLFSTPESTEEYWSLTGEAEFESI-LVGSILDEDTEEEGDSTPWYLIFLSEDDDATVLYCYSNEQGILVHPADATWRCDL 653
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BLAST of mRNA_P-littoralis_Contig1272.4.1 vs. uniprot
Match: A0A6H5JLC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC2_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.660e-21
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 1 
Query:  490 PAPESSPQQXSAGTPXXIASSPSSCGATESFQVTSDGLPEIEGCFQATDASFSKLGSNLEVWTVSGDISFDQVAVIGYSADENEQVD--TPYNVTYITNDDDATTVYCYSSENAITVHPSDATWQ 858
            PAP SSP+         IA S  +CG TESFQ+ S  LP ++GCFQAT   FS   S  E W+++G+  F+ + V      + E+ D  TP+ + +++ DDDAT VYCYS+E  I VHP+DATWQ
Sbjct:  527 PAPSSSPE---------IAPSSPTCGDTESFQIISSELPGVQGCFQATSTLFSTPESTEEYWSLTGEAEFESILVASILDLDTEEEDDSTPWFLVFLSADDDATVVYCYSNEQGILVHPTDATWQ 642
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1272.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L7T2_9PHAE2.150e-5442.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIH4_ECTSI1.560e-3841.00Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
D7FIH5_ECTSI2.530e-3842.92Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
A0A6H5JQX7_9PHAE1.770e-2346.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B7_ECTSI9.920e-2245.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLC2_9PHAE5.660e-2145.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1272contigP-littoralis_Contig1272:16754..19185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size879
Hectar predicted targeting categoryother localisation
Exons3
Cds size879
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789566.0132382-CDS-P-littoralis_Contig1272:16753..168851680789566.0132382-CDS-P-littoralis_Contig1272:16753..16885Pylaiella littoralis U1_48CDSP-littoralis_Contig1272 16754..16885 -
1680789566.0259082-CDS-P-littoralis_Contig1272:17341..178901680789566.0259082-CDS-P-littoralis_Contig1272:17341..17890Pylaiella littoralis U1_48CDSP-littoralis_Contig1272 17342..17890 -
1680789566.035046-CDS-P-littoralis_Contig1272:18987..191851680789566.035046-CDS-P-littoralis_Contig1272:18987..19185Pylaiella littoralis U1_48CDSP-littoralis_Contig1272 18988..19185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1272.4.1prot_P-littoralis_Contig1272.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1272 16754..19185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1272.4.1

>prot_P-littoralis_Contig1272.4.1 ID=prot_P-littoralis_Contig1272.4.1|Name=mRNA_P-littoralis_Contig1272.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=293bp
MTHQKDGTPYEDDFKDVVTGIDGTSVIIGGYTYGSWVETNLDAEGADQDI
VGMSMDGDGTLLWTYQPVATDSNDCTSVAVSPDGAALLVGWTDDDFLEGT
TNYYTDFAGVMIETGSGSPAGSTTFTPAPGASPSLTPAPFEATPTPPGPT
LSPFKAPSTPPKTPAPESSPQQPSAGTPQPIASSPSSCGATESFQVTSDG
LPEIEGCFQATDASFSKLGSNLEVWTVSGDISFDQVAVIGYSADENEQVD
TPYNVTYITNDDDATTVYCYSSENAITVHPSDATWQCKIFCC*
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mRNA from alignment at P-littoralis_Contig1272:16754..19185-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1272.4.1 ID=mRNA_P-littoralis_Contig1272.4.1|Name=mRNA_P-littoralis_Contig1272.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2432bp|location=Sequence derived from alignment at P-littoralis_Contig1272:16754..19185- (Pylaiella littoralis U1_48)
ATGACACATCAAAAGGACGGGACACCGTATGAGGATGACTTCAAAGACGT
GGTGACAGGTATCGATGGCACATCGGTCATCATAGGGGGCTATACCTACG
GCAGTTGGGTGGAGACCAACCTGGATGCAGAAGGGGCTGATCAGGACATT
GTTGGCATGTCCATGGATGGCGACGGCACCTTGCTGTGGACGTATCAGGT
AGTTGCCGCGGGTGGCGGGACACGGAGTTTATCACGCCCTTCGAACGGGT
TCGCAACCCGACTTCTCTACCAGAGGGATGGAATTGTTTACCATGGTGAT
CAAGATGAAATTGTTGCCAAACTTCTACCCCGAGGAAAACAACGATCCAG
ACTTGACGCTTCCCTGTTGTACACCGATCGAGAGATCAGTCATTTCAAAG
GGTGGTAAATGGACGTCATTACAGCCCTTCAGTATTGGCTTGGGTGCATT
TAGTGATGATCGCATACGACGACGTTTTGCTGTTGGCCGCCATATTGGGC
CTGTGTATCTCGGGGGTCAGTTTTTTGTTCGTGCCACGAGACCGACTCAT
TCCTGAGATTCGTTATATGTTGGTCGTCAACGGTTCACCAGACCTCATGG
GGCACTTATGTGCTGTAAAAAATCAGAAACTTTAAATCCAGGAAGTAGAG
GATAATTGGGTTATTGTTCCGGGGGTTGGGAAGCTCCAAAAGTTATGGAA
AACCTAAACCTTGTTGAAAGACTTTCAGGCATCAAATACAGTATCGCCGG
TCGCTGTGAGGACCATGACAGGGAGCCGCCGGTTGTGTGTCCTTCTATCT
GTGCCTCTGTCGACCCCTGTAGGTTTGTTCGGAAGACCCCTCAGCGCAGT
GATGAATGATAACATGTACTGTCCCGTTGATATTGGAGGTTTCTTGGCGG
CCGTAACCGCCGTCTGGCCGCGCCAGGTACTTGCGGTATACCTTTCTTTT
GTTTTCCTCCCTTGTTGCTGTTGAAAGGCGGGGGTAGGCACGATGACTTG
GAGAGAGCTCCATATTATATTTGTTCCAAGGCCCACGTGCTTCTCTGTGA
ATATCTGGGATGTGGTCTTTTTTTCCACAACGAGTGGTTCCAGATATTCG
CATGGAATTTTGAAAAGTTGTTTCGACTTTGTTCTATGCCATGATTCACA
GCATGTCATTACCCAGCTTTATGAGTGGCAATGCATCACATACTTTGCAC
TGTTGTTGTTAATATGTCGAAATGAAGCTGTGTTCCGTGATTCAGCCCTG
CCGTATCCTTCCGTGACTTGCTTGCCGGGCCCCTCCCTTCTGCAGCCGGT
GGCAACGGATAGCAACGACTGCACCAGTGTCGCCGTCAGCCCCGACGGTG
CGGCGCTGCTCGTGGGTTGGACCGACGATGACTTTCTGGAGGGCACGACC
AATTATTATACTGATTTCGCCGGCGTGATGATCGAAACAGGCAGCGGAAG
TCCGGCAGGGTCGACCACGTTCACGCCCGCCCCCGGGGCCTCACCCAGCC
TTACACCTGCTCCTTTTGAGGCCACGCCAACACCACCTGGTCCTACACTT
TCTCCCTTTAAGGCCCCGTCAACACCACCTAAAACACCTGCTCCCGAGTC
ATCACCCCAACAGCCCAGCGCTGGTACTCCACAGCCGATTGCCTCTTCTC
CGTCTTCTTGCGGGGCGACAGAGTCGTTTCAGGTCACGTCCGATGGCCTC
CCCGAAATCGAGGGATGCTTCCAGGCGACAGATGCGTCGTTTTCAAAATT
GGGGTCCAACCTCGAAGTCTGGACGGTCAGCGGGGACATCTCATTCGATC
AGGTTGCAGTCATCGGCTACTCGGCTGACGAAAATGAACAAGTGGTGAGT
GCGACTTGACGGTAACGTTGTTGGTGGGAGTTTCAGGCACTTGTGTCGGG
AAGAGTGTAGGGCCGTTTTGAGCGATCGATATTTCCCGCGCTCCCTCCAG
CCATTGATCGTGCCTTTTTTCGGGCATCTAAACGTTGGAGTTGCCTGATA
CTTTCCTGCATTTCACGTGCGTGGTATTCGAATCGATAGATTACCCCAAG
TCGTATTGTAGCCCTTGACATACGAGTGCCTTCACTCTATCCCCAACCGT
GTACCAAATGCGTCTTCGATGCCATGCTGCGGTTGGACTTCCGTTCCGTT
TATTTCGTGCATTTATCTCGCGGTATCACCTCTTGAAATACCCACTATGA
CGAATCTGTCGGTGCCGCAAGTCATTTTCCTCACTCGACTCGAACCGTGT
CCCACACACGTTCTCCCCCGACGTCGTTGTTATTCGTGGTCGTATCGCAG
GACACCCCCTATAACGTGACTTACATCACCAACGACGACGATGCCACTAC
CGTGTACTGCTATTCGAGCGAGAACGCCATCACCGTCCACCCAAGCGACG
CCACATGGCAATGTAAGATTTTTTGTTGTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1272:16754..19185-

>mRNA_P-littoralis_Contig1272.4.1 ID=mRNA_P-littoralis_Contig1272.4.1|Name=mRNA_P-littoralis_Contig1272.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=879bp|location=Sequence derived from alignment at P-littoralis_Contig1272:16754..19185- (Pylaiella littoralis U1_48)
ATGACACATCAAAAGGACGGGACACCGTATGAGGATGACTTCAAAGACGT
GGTGACAGGTATCGATGGCACATCGGTCATCATAGGGGGCTATACCTACG
GCAGTTGGGTGGAGACCAACCTGGATGCAGAAGGGGCTGATCAGGACATT
GTTGGCATGTCCATGGATGGCGACGGCACCTTGCTGTGGACGTATCAGCC
GGTGGCAACGGATAGCAACGACTGCACCAGTGTCGCCGTCAGCCCCGACG
GTGCGGCGCTGCTCGTGGGTTGGACCGACGATGACTTTCTGGAGGGCACG
ACCAATTATTATACTGATTTCGCCGGCGTGATGATCGAAACAGGCAGCGG
AAGTCCGGCAGGGTCGACCACGTTCACGCCCGCCCCCGGGGCCTCACCCA
GCCTTACACCTGCTCCTTTTGAGGCCACGCCAACACCACCTGGTCCTACA
CTTTCTCCCTTTAAGGCCCCGTCAACACCACCTAAAACACCTGCTCCCGA
GTCATCACCCCAACAGCCCAGCGCTGGTACTCCACAGCCGATTGCCTCTT
CTCCGTCTTCTTGCGGGGCGACAGAGTCGTTTCAGGTCACGTCCGATGGC
CTCCCCGAAATCGAGGGATGCTTCCAGGCGACAGATGCGTCGTTTTCAAA
ATTGGGGTCCAACCTCGAAGTCTGGACGGTCAGCGGGGACATCTCATTCG
ATCAGGTTGCAGTCATCGGCTACTCGGCTGACGAAAATGAACAAGTGGAC
ACCCCCTATAACGTGACTTACATCACCAACGACGACGATGCCACTACCGT
GTACTGCTATTCGAGCGAGAACGCCATCACCGTCCACCCAAGCGACGCCA
CATGGCAATGTAAGATTTTTTGTTGTTGA
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