mRNA_P-littoralis_Contig1271.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1271.22.1
Unique NamemRNA_P-littoralis_Contig1271.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 4.880e-57
Identity = 88/107 (82.24%), Postives = 95/107 (88.79%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTV 321
            H+VP LICP+K YAS  QQEWSKRFES+RKDIEC FGRLKGRFRLFKTGILF +REKIDNAWFTACIIHNML QFDGLANLEKD++W GKDGEAD+TTG FP  T V
Sbjct:  287 HRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGEADQTTGAFPVPTAV 393          
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 3.390e-54
Identity = 84/111 (75.68%), Postives = 92/111 (82.88%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMD 333
            H+VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+AWFTACIIHNMLL FDGL  LE DM+W GKDGEAD TTG FPA T   S +
Sbjct:  153 HRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADSAE 263          
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 9.260e-52
Identity = 84/111 (75.68%), Postives = 92/111 (82.88%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMD 333
            H+VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+AWFTACIIHNMLL FDGL  LE DM+W GKDGEAD TTG FPA T   S +
Sbjct:  385 HRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADSAE 495          
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Match: A0A6H5KFT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT7_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 4.770e-38
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    7 VPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLE 246
            VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+A FTACIIHNMLL FDGL  LE
Sbjct:   56 VPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDACFTACIIHNMLLAFDGLDQLE 135          
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.000e-32
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNML 216
            H+VPLLICP+K YA+V +Q+WSKR ESVRKD+EC FGRLKGRFRLFKTGILF  R KID+A FTACIIH ML
Sbjct:  164 HRVPLLICPFKVYANVAEQQWSKRLESVRKDMECLFGRLKGRFRLFKTGILFGDRTKIDDARFTACIIHTML 235          
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Match: D7FV01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV01_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.330e-31
Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGE 279
            ++PLL+ P KT+ S+E+   S+R ESVRKDIEC FGR+KGR+RLF+  I F SREKIDNAW TACI+HNML +F+GL  +E+D +W G  GE
Sbjct:  150 KIPLLMPPIKTHNSIERHSCSRRMESVRKDIECCFGRVKGRWRLFRGNIPFGSREKIDNAWLTACILHNMLHKFNGLDEMEEDADWVGSAGE 241          
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Match: A0A6H5KVL5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL5_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.720e-31
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    7 VPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETT 294
            +PLLI P KT+ +VE+ +WS+R ES+RKDIEC FGR+KGR+RLF   +LF++R+K+DNAWFTACI+HNML  F+ L  +E+D  W G  G   E T
Sbjct:  159 IPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDMLFSTRQKVDNAWFTACILHNMLHSFNRLDEMEEDGVWVGSAGRLGEAT 254          
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 6.010e-30
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTG 267
            ++PLLI P K +A+VE+ +WS+R ES+RKDIEC +GR+KGRFRLFK GIL+ +R+ IDN WFTACI+HNML  +D L  + +   W G
Sbjct:  154 KIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILHNMLHHYDKLDVMTEATGWQG 241          
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Match: A0A6H5JU81_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU81_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.400e-29
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETT 294
            ++PLLI P KT+ +VE+  WS+R ES+RKDIEC FGR+KG +RLF   ILF++R K+DNAWFTACI+HNML  F+ L  +E+D +W G      E T
Sbjct:  165 KIPLLIPPIKTHNTVEEHGWSRRLESMRKDIECCFGRVKGLWRLFGGDILFSTRPKVDNAWFTACILHNMLHSFNRLDEMEEDADWMGSAARLREAT 261          
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Match: A0A6H5K7N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.730e-28
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGSMDV 336
            ++PLLI P KT+ +VE+ +WS+R ES+RKDIEC FGR+KGR+RLF   ILF++R+K DNA FTACI+HNML  F+ L  +E+D +W G  G   E      A     +MDV
Sbjct:  217 KIPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDILFSTRQKGDNACFTACILHNMLHSFNRLDEMEEDADWVGSAGRLGE------AAAVAAAMDV 321          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1271.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV45_9PHAE4.880e-5782.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRU1_9PHAE3.390e-5475.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L0H2_9PHAE9.260e-5275.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFT7_9PHAE4.770e-3880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE2.000e-3277.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV01_ECTSI1.330e-3160.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVL5_9PHAE1.720e-3157.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K604_9PHAE6.010e-3057.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU81_9PHAE1.400e-2955.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K7N8_9PHAE1.730e-2852.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1271contigP-littoralis_Contig1271:39523..39866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size344
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.71e-23
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size342
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789565.9310532-CDS-P-littoralis_Contig1271:39524..398661680789565.9310532-CDS-P-littoralis_Contig1271:39524..39866Pylaiella littoralis U1_48CDSP-littoralis_Contig1271 39525..39866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1271.22.1prot_P-littoralis_Contig1271.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1271 39525..39866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1271.22.1

>prot_P-littoralis_Contig1271.22.1 ID=prot_P-littoralis_Contig1271.22.1|Name=mRNA_P-littoralis_Contig1271.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGI
LFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGP
FPAQTTVGSMDVGA
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mRNA from alignment at P-littoralis_Contig1271:39523..39866-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1271.22.1 ID=mRNA_P-littoralis_Contig1271.22.1|Name=mRNA_P-littoralis_Contig1271.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=344bp|location=Sequence derived from alignment at P-littoralis_Contig1271:39523..39866- (Pylaiella littoralis U1_48)
CACCAGGTGCCCCTTCTCATATGCCCGTATAAAACGTACGCGAGCGTTGA ACAGCAGGAGTGGAGCAAGAGATTCGAGTCAGTACGCAAGGACATCGAGT GCTTTTTCGGAAGACTCAAGGGGCGGTTCAGGTTGTTCAAGACCGGCATT TTGTTCAACAGCCGGGAGAAGATCGACAACGCCTGGTTCACGGCTTGCAT CATTCACAACATGCTCCTGCAGTTCGACGGCCTGGCCAACCTTGAGAAGG ACATGAACTGGACGGGCAAGGATGGAGAGGCGGACGAGACCACCGGCCCT TTCCCCGCACAGACGACTGTTGGCAGCATGGATGTGGGAGCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1271:39523..39866-

>mRNA_P-littoralis_Contig1271.22.1 ID=mRNA_P-littoralis_Contig1271.22.1|Name=mRNA_P-littoralis_Contig1271.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig1271:39523..39866- (Pylaiella littoralis U1_48)
CACCAGGTGCCCCTTCTCATATGCCCGTATAAAACGTACGCGAGCGTTGA
ACAGCAGGAGTGGAGCAAGAGATTCGAGTCAGTACGCAAGGACATCGAGT
GCTTTTTCGGAAGACTCAAGGGGCGGTTCAGGTTGTTCAAGACCGGCATT
TTGTTCAACAGCCGGGAGAAGATCGACAACGCCTGGTTCACGGCTTGCAT
CATTCACAACATGCTCCTGCAGTTCGACGGCCTGGCCAACCTTGAGAAGG
ACATGAACTGGACGGGCAAGGATGGAGAGGCGGACGAGACCACCGGCCCT
TTCCCCGCACAGACGACTGTTGGCAGCATGGATGTGGGAGCC
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