mRNA_P-littoralis_Contig1271.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1271.1.1
Unique NamemRNA_P-littoralis_Contig1271.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1271.1.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.500e-15
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:    1 MTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSRVTVLESKLCRHGIVMEERETNTHVIRRLSSLFNTQAEILLANPFA-TRANMESVVLNKHGAMDMDSKRERE 360
            + A+GSPSGGW  F NYY P+A AEKER   +++ L   + E P+ +F R  VL S+L  HG++  + + N H++  LS  +  + +IL  +P   +R  +E  V + H   ++  +RE E
Sbjct:   94 IIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLSDEYMME-KILTMSPIPRSREKIEKGVRDAHA--ELLRRREEE 211
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1271.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE1.500e-1536.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1271contigP-littoralis_Contig1271:2031..2450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789565.6784225-CDS-P-littoralis_Contig1271:2030..24501680789565.6784225-CDS-P-littoralis_Contig1271:2030..2450Pylaiella littoralis U1_48CDSP-littoralis_Contig1271 2031..2450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1271.1.1prot_P-littoralis_Contig1271.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1271 2031..2450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1271.1.1

>prot_P-littoralis_Contig1271.1.1 ID=prot_P-littoralis_Contig1271.1.1|Name=mRNA_P-littoralis_Contig1271.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSR
VTVLESKLCRHGIVMEERETNTHVIRRLSSLFNTQAEILLANPFATRANM
ESVVLNKHGAMDMDSKREREMGEQLALVAAGRGIGGGGGN
back to top

mRNA from alignment at P-littoralis_Contig1271:2031..2450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1271.1.1 ID=mRNA_P-littoralis_Contig1271.1.1|Name=mRNA_P-littoralis_Contig1271.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1271:2031..2450- (Pylaiella littoralis U1_48)
ATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAGAATTA
CTACACTCCGCAGGCAGATGCTGAGAAAGAAAGAGCACGACAAGAATGGT
ATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTTTTTCTCCAGG
GTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGATTGTAATGGAGGA
GAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCGCTGTTTAACA
CGCAAGCCGAAATTTTGCTCGCCAATCCGTTTGCTACCCGCGCGAATATG
GAGAGTGTGGTGCTCAACAAACATGGAGCCATGGACATGGACTCGAAGAG
GGAGAGAGAGATGGGAGAACAGCTCGCCCTCGTTGCCGCAGGACGCGGGA
TCGGGGGCGGCGGAGGGAAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1271:2031..2450-

>mRNA_P-littoralis_Contig1271.1.1 ID=mRNA_P-littoralis_Contig1271.1.1|Name=mRNA_P-littoralis_Contig1271.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1271:2031..2450- (Pylaiella littoralis U1_48)
ATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAGAATTA
CTACACTCCGCAGGCAGATGCTGAGAAAGAAAGAGCACGACAAGAATGGT
ATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTTTTTCTCCAGG
GTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGATTGTAATGGAGGA
GAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCGCTGTTTAACA
CGCAAGCCGAAATTTTGCTCGCCAATCCGTTTGCTACCCGCGCGAATATG
GAGAGTGTGGTGCTCAACAAACATGGAGCCATGGACATGGACTCGAAGAG
GGAGAGAGAGATGGGAGAACAGCTCGCCCTCGTTGCCGCAGGACGCGGGA
TCGGGGGCGGCGGAGGGAAC
back to top