mRNA_P-littoralis_Contig1270.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1270.1.1
Unique NamemRNA_P-littoralis_Contig1270.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1270.1.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.460e-9
Identity = 57/167 (34.13%), Postives = 87/167 (52.10%), Query Frame = 1 
Query:   16 SGDAQRARDVAK-FGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVSGGGKTGAAATAAVEPGGAGVGSAAKAHG------LGRHDLANLDGAGGGAGGQQSRAAVKKERHVANSEAKRAEESKATAKFRAEALKAMTAPVESSESSKRLALSVETLTRTAVLRQ 495
            +GDA+   D+ + +G +P+ W++P SL F +FGRPAG  EDVDLK K++ G  +G                            L    L  ++    GAGG+ SRA +K   H  N+E K+ + ++A A  +  AL+A++ P E S+SS  L  SV+ LTR  V ++
Sbjct:  270 AGDAETEDDLTRLYGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSGRPSGTKXXXXXXXXXXXXXXXXXXXEDESKPCLSTKGLKLMN----GAGGKHSRAEMKTLAHEVNAENKKLKGAEADAVLKRRALEALSTPPEDSKSSLELVESVKALTRAVVSKE 432
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1270.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE4.460e-934.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1270contigP-littoralis_Contig1270:17308..17815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size510
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789565.3504071-CDS-P-littoralis_Contig1270:17307..178141680789565.3504071-CDS-P-littoralis_Contig1270:17307..17814Pylaiella littoralis U1_48CDSP-littoralis_Contig1270 17308..17814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1270.1.1prot_P-littoralis_Contig1270.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1270 17308..17814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1270.1.1

>prot_P-littoralis_Contig1270.1.1 ID=prot_P-littoralis_Contig1270.1.1|Name=mRNA_P-littoralis_Contig1270.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
DQDGASGDAQRARDVAKFGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKC
KVSGGGKTGAAATAAVEPGGAGVGSAAKAHGLGRHDLANLDGAGGGAGGQ
QSRAAVKKERHVANSEAKRAEESKATAKFRAEALKAMTAPVESSESSKRL
ALSVETLTRTAVLRQRLAE
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mRNA from alignment at P-littoralis_Contig1270:17308..17815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1270.1.1 ID=mRNA_P-littoralis_Contig1270.1.1|Name=mRNA_P-littoralis_Contig1270.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=508bp|location=Sequence derived from alignment at P-littoralis_Contig1270:17308..17815+ (Pylaiella littoralis U1_48)
GATCAGGACGGGGCAAGTGGAGATGCTCAACGTGCACGTGACGTGGCTAA
ATTCGGCGACAGGCCCGACGACTGGATCAATCCCTTCAGCCTTGCCTTCG
TGTTGTTCGGGCGGCCCGCCGGCGAGCAAGAGGATGTGGACCTCAAATGC
AAGGTGTCTGGAGGCGGCAAGACAGGCGCGGCAGCAACTGCCGCGGTCGA
ACCGGGGGGTGCGGGCGTTGGTTCTGCGGCGAAAGCCCATGGGCTGGGCA
GGCACGACCTGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGGCGGTCAG
CAAAGTCGCGCGGCAGTTAAGAAGGAGAGGCATGTCGCGAACTCAGAGGC
AAAGAGGGCGGAAGAGAGTAAGGCCACCGCTAAGTTTAGGGCTGAGGCCT
TGAAGGCCATGACTGCCCCCGTCGAATCTTCGGAGAGCTCGAAGAGACTG
GCCCTTAGCGTGGAAACGCTCACCAGGACTGCCGTGCTGAGGCAGCGTCT
CGCTGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1270:17308..17815+

>mRNA_P-littoralis_Contig1270.1.1 ID=mRNA_P-littoralis_Contig1270.1.1|Name=mRNA_P-littoralis_Contig1270.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig1270:17308..17815+ (Pylaiella littoralis U1_48)
GATCAGGACGGGGCAAGTGGAGATGCTCAACGTGCACGTGACGTGGCTAA
ATTCGGCGACAGGCCCGACGACTGGATCAATCCCTTCAGCCTTGCCTTCG
TGTTGTTCGGGCGGCCCGCCGGCGAGCAAGAGGATGTGGACCTCAAATGC
AAGGTGTCTGGAGGCGGCAAGACAGGCGCGGCAGCAACTGCCGCGGTCGA
ACCGGGGGGTGCGGGCGTTGGTTCTGCGGCGAAAGCCCATGGGCTGGGCA
GGCACGACCTGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGGCGGTCAG
CAAAGTCGCGCGGCAGTTAAGAAGGAGAGGCATGTCGCGAACTCAGAGGC
AAAGAGGGCGGAAGAGAGTAAGGCCACCGCTAAGTTTAGGGCTGAGGCCT
TGAAGGCCATGACTGCCCCCGTCGAATCTTCGGAGAGCTCGAAGAGACTG
GCCCTTAGCGTGGAAACGCTCACCAGGACTGCCGTGCTGAGGCAGCGTCT
CGCTGAA
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