mRNA_P-littoralis_Contig127.122.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig127.122.1
Unique NamemRNA_P-littoralis_Contig127.122.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig127.122.1 vs. uniprot
Match: A0A6H5JRG8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.820e-12
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:  121 RRGRSTKITGFCCKANGSTGCAAAKKHRSGKCVHTYVVALGVWGSEWGIETPLVMDEGEEEDSGDEGIGTGAGEYKCNTPGFIAK 375
            R  R +   G    ANG T C AA+K + G+CVHT + ALGV GS+   E    +DE + EDSG+EG+G+ A EY+ N P F +K
Sbjct:  152 RHQRPSSHIGLAAAANGGTPCGAARKSKRGRCVHTNITALGVMGSQISEEP---IDEEKGEDSGEEGVGSAASEYRRNKPAFASK 233
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BLAST of mRNA_P-littoralis_Contig127.122.1 vs. uniprot
Match: A0A6H5K1E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E3_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.400e-5
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  250 GSEWGIETPLVMDEGEEEDSGDEGIGTGAGEYKCNTPGFIA 372
            GS+ G  +PL +D G +EDSGDEG+G GA E+K N PGF+A
Sbjct:    2 GSDCGSSSPLNLDGGSDEDSGDEGVGPGAAEHKRNAPGFVA 42
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig127.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRG8_9PHAE1.820e-1245.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1E3_9PHAE1.400e-558.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig127contigP-littoralis_Contig127:498125..498767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size376
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789565.2304156-CDS-P-littoralis_Contig127:498124..4983371680789565.2304156-CDS-P-littoralis_Contig127:498124..498337Pylaiella littoralis U1_48CDSP-littoralis_Contig127 498125..498337 -
1680789565.2404327-CDS-P-littoralis_Contig127:498605..4987671680789565.2404327-CDS-P-littoralis_Contig127:498605..498767Pylaiella littoralis U1_48CDSP-littoralis_Contig127 498606..498767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig127.122.1prot_P-littoralis_Contig127.122.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig127 498125..498767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig127.122.1

>prot_P-littoralis_Contig127.122.1 ID=prot_P-littoralis_Contig127.122.1|Name=mRNA_P-littoralis_Contig127.122.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
MQLGDRQSYVVYHPANRSIPGSWAAVEAENESGGGRHPTSRRGRSTKITG
FCCKANGSTGCAAAKKHRSGKCVHTYVVALGVWGSEWGIETPLVMDEGEE
EDSGDEGIGTGAGEYKCNTPGFIAK
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mRNA from alignment at P-littoralis_Contig127:498125..498767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig127.122.1 ID=mRNA_P-littoralis_Contig127.122.1|Name=mRNA_P-littoralis_Contig127.122.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=643bp|location=Sequence derived from alignment at P-littoralis_Contig127:498125..498767- (Pylaiella littoralis U1_48)
ATGCAATTAGGCGACCGTCAGTCGTACGTGGTGTACCATCCGGCCAATCG
GTCTATTCCTGGCAGTTGGGCAGCCGTGGAGGCCGAGAATGAGTCAGGTG
GCGGGAGGCACCCGACGTCAAGGAGAGGGAGATCAACCAAGATCACGGGC
TTTTGTTGCAAGGTAATATCTGTTTCTGCACGACGCGAACAAGTGATAAT
TTGGGTTGTGGTTGTAGAGTGTCAGTGGGTGCTTCTTCGTGGGCATGAAC
TCCGGGTAAAATATTCCAGTGTAAAATCGGACTAGGTGCGCCCGCCAATT
TAGATGTAGGATTTTCCATTTGTGAAAATAGCTCAGGGCCCCGCCCCGAT
GTTTGACGGTCTGTTTCCGTACCCCTCCCGTACACTGTTCCATCCCTGGC
CCCACCTCGTCGTTGTTCTTCACTACTTAGGCGAATGGGTCGACGGGATG
TGCTGCAGCGAAGAAGCACCGCAGTGGGAAATGTGTTCACACGTATGTGG
TGGCGCTGGGTGTTTGGGGCAGCGAGTGGGGTATTGAAACGCCCCTCGTC
ATGGACGAAGGGGAGGAAGAAGACTCAGGCGACGAAGGCATCGGTACAGG
CGCGGGGGAGTACAAATGCAACACACCGGGCTTCATAGCCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig127:498125..498767-

>mRNA_P-littoralis_Contig127.122.1 ID=mRNA_P-littoralis_Contig127.122.1|Name=mRNA_P-littoralis_Contig127.122.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig127:498125..498767- (Pylaiella littoralis U1_48)
ATGCAATTAGGCGACCGTCAGTCGTACGTGGTGTACCATCCGGCCAATCG
GTCTATTCCTGGCAGTTGGGCAGCCGTGGAGGCCGAGAATGAGTCAGGTG
GCGGGAGGCACCCGACGTCAAGGAGAGGGAGATCAACCAAGATCACGGGC
TTTTGTTGCAAGGCGAATGGGTCGACGGGATGTGCTGCAGCGAAGAAGCA
CCGCAGTGGGAAATGTGTTCACACGTATGTGGTGGCGCTGGGTGTTTGGG
GCAGCGAGTGGGGTATTGAAACGCCCCTCGTCATGGACGAAGGGGAGGAA
GAAGACTCAGGCGACGAAGGCATCGGTACAGGCGCGGGGGAGTACAAATG
CAACACACCGGGCTTCATAGCCAAG
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