mRNA_P-littoralis_Contig127.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig127.78.1
Unique NamemRNA_P-littoralis_Contig127.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig127.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig127contigP-littoralis_Contig127:350674..352783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMP0
PFAMsAnk_2,Ank_4
Model size2110
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000969
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789563.729912-UTR-P-littoralis_Contig127:350673..3517611680789563.729912-UTR-P-littoralis_Contig127:350673..351761Pylaiella littoralis U1_48UTRP-littoralis_Contig127 350674..351761 +
1680789563.7525833-UTR-P-littoralis_Contig127:352061..3527831680789563.7525833-UTR-P-littoralis_Contig127:352061..352783Pylaiella littoralis U1_48UTRP-littoralis_Contig127 352062..352783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789563.738742-CDS-P-littoralis_Contig127:351761..3520611680789563.738742-CDS-P-littoralis_Contig127:351761..352061Pylaiella littoralis U1_48CDSP-littoralis_Contig127 351762..352061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig127.78.1prot_P-littoralis_Contig127.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig127 351762..352061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig127.78.1

>prot_P-littoralis_Contig127.78.1 ID=prot_P-littoralis_Contig127.78.1|Name=mRNA_P-littoralis_Contig127.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MGAAAHGGHLHVVQGLRARGYRWSTGICKQAAGDGHLVLLKWCLLNGCPW
SWSEVVDAARGGDFADGSLDVLEWCNKVGGGEVLVDGEWLPMVVFNSTA*
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mRNA from alignment at P-littoralis_Contig127:350674..352783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig127.78.1 ID=mRNA_P-littoralis_Contig127.78.1|Name=mRNA_P-littoralis_Contig127.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2110bp|location=Sequence derived from alignment at P-littoralis_Contig127:350674..352783+ (Pylaiella littoralis U1_48)
GGGGGGAGGGTGATAAAAAATAAAAACAGGCATCTGTGCGTGCGTGCTTG
TTTGTGTTTTGAAACTGTTTGAAGCCGTGTTGTGAAGGCTGTTTGGTGTG
TGTGTGTGTGTGTGCGCGCGAGTGCGCGTGTGTCCGGAGCTGATTTCGTG
AGAAATCCTTGCTCGGGGCTGAGTTGTGGGCATGCGGTGGGACCAGCGGA
TGTATCGAGCGCGAAGTCACAGGATGAGGATTTTTGCCGGATCAGTTGTA
CATGTGTGCGTGTGTTTGTGTTTTTTTTCTCGCTCTTATAATACAGCTGA
CGGTTCTTCGGTTTAGTGCCTCGGCTTCTTTGTTTGTTTTGTTTTTCGAA
ACGTCATCAAACGGAAGACGCACTTATACCAATCCTTGCCTGGGGACGCT
GCCTTGTCTTGGCGTGTGGCGTGTATCTCGCCGCTCTGTGTACGTATGAT
ATGCGCTTGTTGAGACTTGTAAACGATGGAATCTGCTCGCTATGATTAGT
CGTGCCTCCGTGGATTCAAGTCGATCAAAAACGACGTGCGTGATGAGCAA
GCTTCACCATCTGAAGTTATCATGACGGAGAGAGAGGCCTTCGTCACGGC
CGTATCCTCGGAACTAATAACGGTAACTCGTGCGTACAGACAACGCGATG
AACATTTGATATCGGTTTTGTTTTGTTTTTATCATTCCTAAAAAATGACG
CGGTTCCACTTTGGGGAAATGGCCGGGCCTGAGCAGCTGAGCAGTAGAGT
GTTGCCCCGTCTAAAAATTACACGGGTACCCGAGTCGGGTACCCGAGTAA
TGCAGTGCCCGATCGGGTCCGGGTAGCAATTTTGGACCCGCGGGTAATCC
GAAGTCGGGTACCCGGGTACCCGTGTTGGTACCCCTATTCTGATACACGG
CGCCCCCAAAAAGCAGAAGGCACGAAAGCACCGATCTTCTACGATGGGAG
GGCACCAAGTACGAACGGGGAGGTTTTGATTCAAGAATTCACAGCAGCCA
CGTCCCAGCATCAGGTGCAGGACTAGGGCTTTTGGATTCAGTGGTCTGGT
GTTTGGAACACGGGGGGTGGGAATATTCCGATTCGATCATGGGCGCGGCT
GCGCATGGGGGGCATTTGCACGTTGTTCAGGGTTTGCGAGCTAGGGGCTA
CCGCTGGAGTACGGGTATCTGTAAGCAAGCAGCGGGCGATGGGCACCTGG
TGCTGCTCAAGTGGTGCCTTCTGAATGGATGCCCATGGTCTTGGTCTGAA
GTAGTGGACGCAGCGCGTGGCGGTGACTTTGCCGATGGCTCTTTGGACGT
ATTGGAGTGGTGCAACAAAGTTGGAGGAGGGGAAGTACTTGTGGATGGAG
AGTGGTTGCCCATGGTAGTTTTCAACAGCACTGCGTAGGTTTTTTGACAG
CAGGAAAGCAGCGGTAACAGAGTGGGCATATGAGCATAATTTGTTTCGCG
TGGCGCGCTGCAGCTTTTTTTTGTGTCCATGTGGTGATTTTATTTTGTTT
TTCAAGCTTCAAGCTTGTGCTTGACTTTCCGTTTAGCGAAACAAATATGC
CCCGAACCAATGAAATTTAATTAGGAATGATGGCATGGATACAGCACGTT
ATCGCGTGACATGAGATCATGACATGATGAGATTATAGCATGACGTACAC
CTGGAACTGTAGTCCTTTAGTCTTTATCAAAAGTCACCTTATCTGTGTGA
CCCCGGCTGGTGCATCCACTTCATACCGAAAAGTAAGACTGGTGCCCAGA
ATACATTGGACTACAGATTACAGCATACACACACACACCCGTAAAGGGCC
GAAAGACGAACCCGACTCATGCCCTGTGGCACTTCCCACCTGGGCGCGCC
GCTGAACTAGTGGACAGGCTGATAATAGTGTATGTCTACTCGGGTACCCG
GGTACCCGGGTGGGGTACCCGAGTTAGTCATTACCCGGGTACCCGCGGGT
AATGATTTTCGAGGCCCAAGGGGTACCCGGGTCCAAAAAAAAGTGACGGG
GCAATACTCTACTGAGCAGGGAGGAAGTCATAAAAAATACTTCGTATTTC
ACCTCCCGCTGGTCCATTTTCGTTTTTCAGTTTTTCCTCCAGCGTCCGTT
TGCTTCTGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig127:350674..352783+

>mRNA_P-littoralis_Contig127.78.1 ID=mRNA_P-littoralis_Contig127.78.1|Name=mRNA_P-littoralis_Contig127.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig127:350674..352783+ (Pylaiella littoralis U1_48)
ATGGGCGCGGCTGCGCATGGGGGGCATTTGCACGTTGTTCAGGGTTTGCG
AGCTAGGGGCTACCGCTGGAGTACGGGTATCTGTAAGCAAGCAGCGGGCG
ATGGGCACCTGGTGCTGCTCAAGTGGTGCCTTCTGAATGGATGCCCATGG
TCTTGGTCTGAAGTAGTGGACGCAGCGCGTGGCGGTGACTTTGCCGATGG
CTCTTTGGACGTATTGGAGTGGTGCAACAAAGTTGGAGGAGGGGAAGTAC
TTGTGGATGGAGAGTGGTTGCCCATGGTAGTTTTCAACAGCACTGCGTAG
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