mRNA_P-littoralis_Contig127.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig127.30.1
Unique NamemRNA_P-littoralis_Contig127.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig127.30.1 vs. uniprot
Match: A0A6H5KMY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY3_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.480e-5
Identity = 29/41 (70.73%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 QGAVLDQLARDVHTLECKAAAGTETA-HFRPSPTHPQGAGD 120
            QGAVLDQLA DVHTLE KAAA    A H RPSP H Q A D
Sbjct:   98 QGAVLDQLAGDVHTLELKAAAAASGATHLRPSPIHNQEAKD 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig127.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMY3_9PHAE2.480e-570.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig127contigP-littoralis_Contig127:128882..129170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size289
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_000200.1
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789561.917605-CDS-P-littoralis_Contig127:128882..1291701680789561.917605-CDS-P-littoralis_Contig127:128882..129170Pylaiella littoralis U1_48CDSP-littoralis_Contig127 128883..129170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig127.30.1prot_P-littoralis_Contig127.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig127 128883..129170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig127.30.1

>prot_P-littoralis_Contig127.30.1 ID=prot_P-littoralis_Contig127.30.1|Name=mRNA_P-littoralis_Contig127.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
QGAVLDQLARDVHTLECKAAAGTETAHFRPSPTHPQGAGDDEPYGQAEVL
PDVQQVDVQQVDTAGAREEGCHDERGRIQDARTGCENVHAAREVLR
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mRNA from alignment at P-littoralis_Contig127:128882..129170-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig127.30.1 ID=mRNA_P-littoralis_Contig127.30.1|Name=mRNA_P-littoralis_Contig127.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=289bp|location=Sequence derived from alignment at P-littoralis_Contig127:128882..129170- (Pylaiella littoralis U1_48)
CAGGGGGCCGTGCTCGACCAGCTGGCAAGGGATGTTCACACACTGGAGTG
CAAGGCGGCTGCCGGCACCGAAACTGCTCATTTTCGACCGTCGCCAACCC
ATCCCCAAGGAGCAGGAGACGACGAACCTTATGGTCAGGCCGAAGTACTG
CCCGACGTACAACAGGTGGACGTACAACAGGTGGACACGGCAGGAGCACG
CGAGGAGGGCTGCCATGACGAGCGCGGACGAATTCAGGACGCACGTACCG
GATGTGAGAACGTGCATGCGGCACGCGAGGTTTTACGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig127:128882..129170-

>mRNA_P-littoralis_Contig127.30.1 ID=mRNA_P-littoralis_Contig127.30.1|Name=mRNA_P-littoralis_Contig127.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig127:128882..129170- (Pylaiella littoralis U1_48)
CAGGGGGCCGTGCTCGACCAGCTGGCAAGGGATGTTCACACACTGGAGTG
CAAGGCGGCTGCCGGCACCGAAACTGCTCATTTTCGACCGTCGCCAACCC
ATCCCCAAGGAGCAGGAGACGACGAACCTTATGGTCAGGCCGAAGTACTG
CCCGACGTACAACAGGTGGACGTACAACAGGTGGACACGGCAGGAGCACG
CGAGGAGGGCTGCCATGACGAGCGCGGACGAATTCAGGACGCACGTACCG
GATGTGAGAACGTGCATGCGGCACGCGAGGTTTTACGC
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