mRNA_P-littoralis_Contig127.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig127.126.1
Unique NamemRNA_P-littoralis_Contig127.126.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig127.126.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.550e-7
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 3 
Query:  270 YSGNFGRSEYARKKGLDKKAGYITSADDSKL 362
            +SGNFGRSEYAR+ GLDK+AGYI+SADDSKL
Sbjct:  548 WSGNFGRSEYARRNGLDKEAGYISSADDSKL 578
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BLAST of mRNA_P-littoralis_Contig127.126.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.860e-7
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 3 
Query:  255 MCMCIYSGNFGRSEYARKKGLDKKAGYITSADDSKL 362
            +C+ I++GNFGRS+YARK GLDK  GY  SADDSKL
Sbjct:   30 VCVRIHAGNFGRSDYARKNGLDKMVGYTGSADDSKL 65
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BLAST of mRNA_P-littoralis_Contig127.126.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.610e-6
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 3 
Query:  276 GNFGRSEYARKKGLDKKAGYITSADDSKL 362
            GNFGRS+YARK GLDK  GYI SADDSKL
Sbjct:   24 GNFGRSDYARKNGLDKMVGYIRSADDSKL 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig127.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.550e-783.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE7.860e-769.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE2.610e-682.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig127contigP-littoralis_Contig127:505488..505850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size363
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789561.0097625-CDS-P-littoralis_Contig127:505487..5058501680789561.0097625-CDS-P-littoralis_Contig127:505487..505850Pylaiella littoralis U1_48CDSP-littoralis_Contig127 505488..505850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig127.126.1prot_P-littoralis_Contig127.126.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig127 505488..505850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig127.126.1

>prot_P-littoralis_Contig127.126.1 ID=prot_P-littoralis_Contig127.126.1|Name=mRNA_P-littoralis_Contig127.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
LSGEFWGPVERFLQQLMQLAKNINNSAAMYRHISTRRSLILLFHVPTRLN
KKESTDLLVFFIYIFPRAMYTLCARRLSLPTRPHVCVCVYIQETSAARST
RARKASTRKRATLHRPTTPN*
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mRNA from alignment at P-littoralis_Contig127:505488..505850-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig127.126.1 ID=mRNA_P-littoralis_Contig127.126.1|Name=mRNA_P-littoralis_Contig127.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig127:505488..505850- (Pylaiella littoralis U1_48)
CTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGATTTTTGCAACAACTGAT
GCAATTAGCCAAAAACATAAATAACTCTGCAGCTATGTATCGACATATCT
CGACGAGGCGATCACTAATATTGTTGTTTCACGTCCCAACGCGATTGAAC
AAAAAGGAGAGCACGGACCTACTTGTTTTTTTTATATATATATTTCCTCG
CGCAATGTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCACACGGCCCC
ATGTATGTGTATGTGTATATATTCAGGAAACTTCGGCCGCTCGGAGTACG
CGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATCGGCCGAC
GACTCCAAACTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig127:505488..505850-

>mRNA_P-littoralis_Contig127.126.1 ID=mRNA_P-littoralis_Contig127.126.1|Name=mRNA_P-littoralis_Contig127.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig127:505488..505850- (Pylaiella littoralis U1_48)
CTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGATTTTTGCAACAACTGAT
GCAATTAGCCAAAAACATAAATAACTCTGCAGCTATGTATCGACATATCT
CGACGAGGCGATCACTAATATTGTTGTTTCACGTCCCAACGCGATTGAAC
AAAAAGGAGAGCACGGACCTACTTGTTTTTTTTATATATATATTTCCTCG
CGCAATGTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCACACGGCCCC
ATGTATGTGTATGTGTATATATTCAGGAAACTTCGGCCGCTCGGAGTACG
CGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATCGGCCGAC
GACTCCAAACTAG
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