mRNA_P-littoralis_Contig127.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig127.79.1
Unique NamemRNA_P-littoralis_Contig127.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig127.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig127contigP-littoralis_Contig127:352809..353353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size545
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789560.9068043-UTR-P-littoralis_Contig127:352808..3529511680789560.9068043-UTR-P-littoralis_Contig127:352808..352951Pylaiella littoralis U1_48UTRP-littoralis_Contig127 352809..352951 +
1680789560.9317973-UTR-P-littoralis_Contig127:353260..3533531680789560.9317973-UTR-P-littoralis_Contig127:353260..353353Pylaiella littoralis U1_48UTRP-littoralis_Contig127 353261..353353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789560.9234056-CDS-P-littoralis_Contig127:352951..3532601680789560.9234056-CDS-P-littoralis_Contig127:352951..353260Pylaiella littoralis U1_48CDSP-littoralis_Contig127 352952..353260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig127.79.1prot_P-littoralis_Contig127.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig127 352952..353260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig127.79.1

>prot_P-littoralis_Contig127.79.1 ID=prot_P-littoralis_Contig127.79.1|Name=mRNA_P-littoralis_Contig127.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MYLTNIGTMHTSKGQLSVFTLLPGGRSVHDVRRLFVIGQDSECQGDGRSF
VLKKLTVVMIFQLLSASEDKQGGSYTVDYHSTWIICVRVSVILLVFPCFC
ER*
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mRNA from alignment at P-littoralis_Contig127:352809..353353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig127.79.1 ID=mRNA_P-littoralis_Contig127.79.1|Name=mRNA_P-littoralis_Contig127.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=545bp|location=Sequence derived from alignment at P-littoralis_Contig127:352809..353353+ (Pylaiella littoralis U1_48)
TGTGCACATGTCATGTCGTTTTGTTTGTCAAGTCGAAGAGGCAGACTTTC
TCGCTCTTTTGTCGTTGTGAGAGGGGGCGTCTTTTTTTTGTGTGTGTGTG
TGCATGCTGTGTGCATCACGTGAAGCGTTGTAAACCTGCTGAGATGTACT
TAACAAACATTGGCACTATGCATACATCGAAAGGACAGCTGTCAGTCTTC
ACGCTCCTCCCAGGGGGCAGGTCTGTGCATGACGTACGAAGGCTGTTCGT
GATTGGTCAAGATTCGGAATGTCAGGGTGACGGCCGTAGTTTTGTGTTAA
AAAAACTAACTGTTGTCATGATTTTCCAGCTGTTGTCCGCGTCCGAGGAT
AAACAAGGCGGCAGCTACACCGTGGACTATCATTCTACGTGGATTATTTG
CGTCCGAGTTTCTGTCATACTACTCGTTTTTCCGTGTTTTTGTGAAAGAT
GACAGATGTAAGCGTGGTGCATGTTGTGGCGTCTTTTTTTTTGCACGCAG
ACGTTGCACAGCAATGTAAATGCTTTTTTTTTATTTTAACCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig127:352809..353353+

>mRNA_P-littoralis_Contig127.79.1 ID=mRNA_P-littoralis_Contig127.79.1|Name=mRNA_P-littoralis_Contig127.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig127:352809..353353+ (Pylaiella littoralis U1_48)
ATGTACTTAACAAACATTGGCACTATGCATACATCGAAAGGACAGCTGTC
AGTCTTCACGCTCCTCCCAGGGGGCAGGTCTGTGCATGACGTACGAAGGC
TGTTCGTGATTGGTCAAGATTCGGAATGTCAGGGTGACGGCCGTAGTTTT
GTGTTAAAAAAACTAACTGTTGTCATGATTTTCCAGCTGTTGTCCGCGTC
CGAGGATAAACAAGGCGGCAGCTACACCGTGGACTATCATTCTACGTGGA
TTATTTGCGTCCGAGTTTCTGTCATACTACTCGTTTTTCCGTGTTTTTGT
GAAAGATGA
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