mRNA_P-littoralis_Contig127.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig127.18.1
Unique NamemRNA_P-littoralis_Contig127.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig127.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig127contigP-littoralis_Contig127:91286..94704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size506
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789560.5612907-UTR-P-littoralis_Contig127:91285..914911680789560.5612907-UTR-P-littoralis_Contig127:91285..91491Pylaiella littoralis U1_48UTRP-littoralis_Contig127 91286..91491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789560.5706184-CDS-P-littoralis_Contig127:91491..916591680789560.5706184-CDS-P-littoralis_Contig127:91491..91659Pylaiella littoralis U1_48CDSP-littoralis_Contig127 91492..91659 -
1680789560.5794187-CDS-P-littoralis_Contig127:94572..947041680789560.5794187-CDS-P-littoralis_Contig127:94572..94704Pylaiella littoralis U1_48CDSP-littoralis_Contig127 94573..94704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig127.18.1prot_P-littoralis_Contig127.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig127 91492..94704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig127.18.1

>prot_P-littoralis_Contig127.18.1 ID=prot_P-littoralis_Contig127.18.1|Name=mRNA_P-littoralis_Contig127.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
APRDLPHVEEVQIRCHPNGYVQVSAHGITYKATVRVAQGIEPVRETTHLL
RPPAVKISTGSPCTTGEPTAAHGSPAASPRGLPSAALPVMITGSLFGIQ*
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mRNA from alignment at P-littoralis_Contig127:91286..94704-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig127.18.1 ID=mRNA_P-littoralis_Contig127.18.1|Name=mRNA_P-littoralis_Contig127.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3419bp|location=Sequence derived from alignment at P-littoralis_Contig127:91286..94704- (Pylaiella littoralis U1_48)
GCCCCGCGCGACCTTCCTCACGTCGAGGAGGTTCAAATCCGTTGCCATCC
GAATGGCTACGTCCAGGTGAGTGCGCATGGAATCACGTATAAAGCAACCG
TCCGCGTCGCGCAGGGGATCGAACCCGTCCGCGTAGTGGGGATCGAACCC
GTCCGTAAAAGTATATGAGGGGGTCGAACCCAATTGCGTAGTTTGGATCG
AACCCGTCCGTAAAAGTATATGAGGGGATCGAACCCGATTGCGTAGTGGG
GATCGAACCCGTCCGAAAACCAGTGGGGATCGAACCCGTCCGAAAACCAG
TGGGGGTCGAACCCGTCCGTAAAAGTATATGAGGGGATCGAACCCGTCCG
TTGCGTAGTGGGGATCGAACCCGCCAGTAAAAGTATATGAGGGGATCGAA
CCCGATTGCGTAGTGGGGATCGAACCCGTCCGAAAACCAGGGGTCGAACC
TGTTGGATACGAGGGGATCGAACCCAATTGCGTAGTGGGGATCGAGCCTG
TCCAAAAATTAGGACCAAACCAAACCAGGGGGTCGAACCCGTTCGGATAC
GAGGGGATCGAACCCGATTGCGTAGTGGGGATCGAACCTGTCTGAAAATT
AGGGGGGGTCGAACCCCTTCGTATCCGAGGGGATCGAACCCAATTGCGTA
GTGGAGATCGAACCTGTTCGTAGGGGGTCGAGCTCGTTCGTGCCCGAGGG
GGTCGAACCCAAATCGTGTAGTGGGGATCGAACCCGTCCGTAAATTAAGG
GATCGAACCCGTTCGAACATATTCGTCAAAATAGAAACATAGAAAAATAA
AAATTAAACATAAAGTGCCCTCCGTAAGCGGGGCATCGAGCCGTAGTGGG
GATCGAACCTGTCTGAAAATTAGGGGGGGTCGAACCCCTTCGTATCCGAG
GGGATCGAACCCAATTGCGTAGTGGAGATCGAACCTGTTCGTAGGGGGTC
GAGCTCGTTCGTGCCCGAGGGGGTCGAACCCAAATCGTGTAGTGGGGATC
GAACCCGTCCGTAAATTAAGGGATCGAACCCGTTCGAACATATTCGTCAA
AATAGAAACATAGAAAAATAAAATTTAAACATAAAGTGCCCTCCGTAAGC
GGGGCATCGAGCCCCCCCCCCGCCGTAGTTTTAAAGGTGTAGGGGATCGT
ACCCAGACGTAAATGTATAATAACTATGAGTCCATAACGGAACCTAATAC
TCGTATACGCCCTACGGTGGTTCCCGGTACCGCGGCCTGGTTACCGCGGG
CCTGGGCGGTTGTACAGTATTGCGGCCCGGTCTACCGCAGCATGGTTATG
GTGTGTGTGTACAGCAGTAGCCTACCTACTCATTTCCGGTTCCGGAGCAT
ACGAAGCAACCAGCCACTGATGTCGGTATCGTACAGAATGAGGTAGAACG
GAAAATAAGGATCGAGTATCATCAGCAGTATCGTACACAGTGAGGTGAAA
TAAAATAAAATAAAGTGTCAACAGCAGTCGTCAGGGTGTCTGGGTACAGC
AGCCTACTCATTACCCGGTTCCGGAGTATTCCTAATGTCGGTATCGTACA
TGACAGCATTTCAGGTATGATAGAACCGAAAATAAAATGAAATAGAATAA
AGCATCCTTCCGTAAGTGATGAAATCGAACCCCGCCGTAGACGCAGGTAT
TTAAGGGGATCGAACCCGGTCGGTCGTAAATAGCACGCATTATCGCTACC
AGGTATTCGTCAATAGCGGGTCGTCCGATACGCACTCCCGGTACCGCAGC
GTGGTTACAGCAGGCAGGGACGTTTGTACAATCGTATGGCGGCTCGGTCT
ACAGCAGTATCGCAGTAGCATACTCACTACTCAGTTTGAGTGTACGAATC
CACCCCTGATGTCAGGAACAGCAGTTCCGGAGTGTACGACGCAACTGCTC
ATGGCAGTAACGTACCATATCAATATAAGGACGGCGGTGTAGCCAGTACT
GCTGTACTGTACAGGCAGTCGGTGAAACAGCATTTATGATAAATGAGTAG
AGAAACCGATCCCTCTTTTCCAGTTGTACCGAATTACTCCGAACCAAAAT
ATTGCTGGCATCCGAGAACGATGGAAAGCAGAAAGGTGACAGAGAATATA
TGGAACCTAGTATACCCCCATAGATTTAAGGCCGAAGCCCGAACAAATGC
ACAGCGTTGGATAGAGATAAAATGCAAGCACCCAAAATTCACCTCGCGAG
ATATGTCGCCGCCGCTGGCGCGGAAGAGCCAGGCGCGGCGACGGCTGGCG
CCGGGGGACCCGGCAGAAACACCTTCGCTCCTTTCTCGTGGAGCATGCCG
CGCAAAGCTTCGAGTCCCCACAGGAGCATGGAGCGCGGCCCCGCCGCCGC
CTTGTAGGCCGCCGTGCCGAGGGAGGAGTCCGCCTCGGTCACTGCAGCTG
CCATCGCTGCAAACAGGGACACGCCGGATGAGGTTGCCGCGGCTCTCCAC
GATCGGAGCGATGGCCTCCGTGACTTCGAGCAGGGGGAGGCTCGAGAACG
TCGCTCCGTCTGGACGGATGACCTTTGCCAAATCAACGACGTTGGGACCT
CCTTGGAGGGCGGGCTTTGTGCATTTTAGGGACGCTAAGGTCCAGTTGGC
GTCCAGAGCGCTGGCGCCCGTTGCGACAGCCGCGATTGACATGGTAAACT
CTGTGTTTTCCTATCCTCTTTACGTTGCAGTGCTCTTGTAGAGGCTTTTC
CACGCACGCGTTGGCTGCCCCAGGCACGAGTGATGGAACCCTCTCCTTTC
ACTACTACAATAATATGGCTTTCTCAACCCGGGGACGCTCTTCGAACGTC
CCCCCTTTTTCGGGCTCAGATTATTTGCACAGCAGTAAGTGAAATACAGA
TGAAATCATGAATATTAATAAGGAGTAATACGGAGTGCCAGCGGGTACTT
CGTACTCCGGAGTGTATGATAAGTCACTCCTCTTCTGGTTGTTGCCGAAA
AGAGAAAAGTACTTGTACCCGTAAAAAAAAGAGTGTGCTGTATTTGTGTT
TTATACTTGTAATGCTTCAGTCAGCATCAATCAGCAATATGCGAGGAGAC
AACCCACCTCCTGCGCCCCCCAGCAGTGAAGATTTCCACCGGAAGCCCTT
GTACCACGGGAGAACCTACAGCAGCACATGGATCCCCAGCAGCATCGCCG
CGAGGGTTACCGTCCGCCGCCCTCCCCGTCATGATCACCGGAAGCTTGTT
TGGTATCCAATAATCAGAAGGTGCCAGTCCGCCCCCGGCCTCAACAATCA
ACAATACAGGCGTTGCTGGTCTCGTCCTTCTTCCTCGGAACGCACCAGAT
TTCCCTGGTTGGCGTCGAAGTGCGTGTACCAGAAGCAGTAGTCTGCACGC
CACACGCACACGCTACTGCTACTGTAGGACAGCACAGGATTGTGATCCAA
CAGGGTGCGTGTGTGCGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig127:91286..94704-

>mRNA_P-littoralis_Contig127.18.1 ID=mRNA_P-littoralis_Contig127.18.1|Name=mRNA_P-littoralis_Contig127.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig127:91286..94704- (Pylaiella littoralis U1_48)
GCCCCGCGCGACCTTCCTCACGTCGAGGAGGTTCAAATCCGTTGCCATCC
GAATGGCTACGTCCAGGTGAGTGCGCATGGAATCACGTATAAAGCAACCG
TCCGCGTCGCGCAGGGGATCGAACCCGTCCGCGAGACAACCCACCTCCTG
CGCCCCCCAGCAGTGAAGATTTCCACCGGAAGCCCTTGTACCACGGGAGA
ACCTACAGCAGCACATGGATCCCCAGCAGCATCGCCGCGAGGGTTACCGT
CCGCCGCCCTCCCCGTCATGATCACCGGAAGCTTGTTTGGTATCCAATAA
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