mRNA_P-littoralis_Contig1269.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1269.2.1
Unique NamemRNA_P-littoralis_Contig1269.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Match: A0A6H5KE11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE11_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 1.710e-86
Identity = 141/149 (94.63%), Postives = 146/149 (97.99%), Query Frame = 1
Query:    4 KVAHGILYETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQEHRGQIDKKYRRNIEAIVRRPNRDEEPEPMSKCPISGADVPITQLECPSTK 450
            KVAHGIL+ETIRQLEDQGIHVPQ+LRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSIS FPTH+VPVLTSTVIECQRSGLRNSAFEYASTLMRQE+RGQIDKKYRRNIEAIVRRPNRDEEPEP SKCPIS A+VPITQLECPSTK
Sbjct:  602 KVAHGILFETIRQLEDQGIHVPQALRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQEYRGQIDKKYRRNIEAIVRRPNRDEEPEPTSKCPISAAEVPITQLECPSTK 750          
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 2.970e-85
Identity = 142/149 (95.30%), Postives = 146/149 (97.99%), Query Frame = 1
Query:    4 KVAHGILYETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQEHRGQIDKKYRRNIEAIVRRPNRDEEPEPMSKCPISGADVPITQLECPSTK 450
            KVAHGIL+ETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSIS FPTH+VPVLTSTVIECQRSGLRNSAFEYASTLMRQE+RGQIDKKYRRNIEAIVRRPNRDEEPEP SKCPIS A+VPITQLECPSTK
Sbjct: 1223 KVAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQEYRGQIDKKYRRNIEAIVRRPNRDEEPEPTSKCPISAAEVPITQLECPSTK 1371          
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Match: A0A835ZAW6_9STRA (WD repeat membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW6_9STRA)

HSP 1 Score: 204 bits (519), Expect = 6.550e-58
Identity = 104/148 (70.27%), Postives = 120/148 (81.08%), Query Frame = 1
Query:   10 AHGILYETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQEHRGQIDKKYRRNIEAIVRRPNRDEE-PEPMSKCPISGADVPITQLECPSTK 450
            AH +LYE IR+LEDQ   VPQ+LRR F+LLHSY L K++ RRG+HEGAARMLLRVARS S FP H V VLTS VIECQR+GLR SAFEYAS LMR EHRGQIDKKYRR+IEAIVRRP+R+ E PE  + CPI+GA +  T LEC +T+
Sbjct: 1276 AHAVLYEAIRRLEDQRARVPQALRRPFLLLHSYTLAKRLARRGEHEGAARMLLRVARSASRFPAHTVAVLTSCVIECQRAGLRESAFEYASVLMRPEHRGQIDKKYRRSIEAIVRRPSREPEAPEVCTPCPITGAPLAATALECAATR 1423          
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Match: F0YFC0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFC0_AURAN)

HSP 1 Score: 203 bits (517), Expect = 1.210e-57
Identity = 98/149 (65.77%), Postives = 123/149 (82.55%), Query Frame = 1
Query:    4 KVAHGILYETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQEHRGQIDKKYRRNIEAIVRRPNRDEEPEPMSKCPISGADVPITQLECPSTK 450
            K AH ILYET  QLE Q +HVPQ+LR+ F+LLHSY+LVKK+++ GDH+ AARMLLRVA+SIS FP+H  P+LTSTVIECQR+GL+ SA EYA+ LMR E RG+ID K++R IE ++RRPN +EEPE +S CPISG  +P T+LECP+TK
Sbjct: 1169 KAAHAILYETTIQLEAQEVHVPQNLRKPFILLHSYLLVKKLIKAGDHDAAARMLLRVAKSISKFPSHGAPILTSTVIECQRAGLKASAHEYATQLMRPELRGKIDPKFKRKIEQMIRRPNLEEEPELLSPCPISGVMIPRTELECPTTK 1317          
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Match: A0A7S2AWF5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWF5_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.030e-57
Identity = 95/147 (64.63%), Postives = 119/147 (80.95%), Query Frame = 1
Query:   10 AHGILYETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQEHRGQIDKKYRRNIEAIVRRPNRDEEPEPMSKCPISGADVPITQLECPSTK 450
            AH IL+ETIRQL +Q   VP SLRR F LLHSY+LVKK + R DH GAAR+LLRVA+SIS FP H+V +LTSTVIE  R+GL+ SA EYA+ LMRQE+R Q+D K++R IE +VRRPNR+E PEP+S+CP+SG  +P++ LECP+TK
Sbjct:  248 AHNILHETIRQLGEQRTRVPLSLRRPFTLLHSYLLVKKRIARDDHAGAARLLLRVAKSISKFPAHMVIILTSTVIESARAGLKKSALEYATVLMRQEYRAQVDSKFKRKIEGLVRRPNREELPEPVSECPVSGILIPVSCLECPTTK 394          
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Match: A0A7S2V6K7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6K7_9STRA)

HSP 1 Score: 177 bits (449), Expect = 4.440e-53
Identity = 90/125 (72.00%), Postives = 106/125 (84.80%), Query Frame = 1
Query:   79 RRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQEHRGQIDKKYRRNIEAIVRRPNRDEE-PEPMSKCPISGADVPITQLECPSTK 450
            RRSF+LLHSYILVKKMV+RGDH  A+RMLLRVA+SIS FP+H+VP+LTSTVI CQR+GL+ SAFEY S LMR E R Q+D K++R IE IVRRPNR EE  E M+KCPISG  +P+TQLECP+TK
Sbjct:    1 RRSFILLHSYILVKKMVKRGDHMSASRMLLRVAKSISKFPSHMVPILTSTVITCQRAGLKPSAFEYGSMLMRPEFRQQMDPKFKRKIEQIVRRPNRGEEMAEDMTKCPISGIPIPMTQLECPTTK 125          
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Match: A0A2D4CLP2_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CLP2_PYTIN)

HSP 1 Score: 184 bits (466), Expect = 7.840e-53
Identity = 88/152 (57.89%), Postives = 117/152 (76.97%), Query Frame = 1
Query:    4 KVAHGILYETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQEHRGQIDKKYRRNIEAIVRRPNRDEEPEPMSKCPISGADVPITQLECPSTKVWV 459
            K+AH +L ET RQLE   IHV Q LR+S +LLHSYILVKK+V+RG+H  AARML+RVA+ IS FPTHV  +L S VIECQR+GLR  +++YA+TLM+ E+R  IDK+ +RNIEAIVRRPN+++ P+P++ CP  G ++P   L+C   K W+
Sbjct:  283 KMAHDVLVETHRQLESHKIHVSQELRQSLMLLHSYILVKKLVKRGEHTAAARMLVRVAKHISKFPTHVSNILISAVIECQRAGLRAYSYDYATTLMKPEYRNNIDKEIKRNIEAIVRRPNKEQAPDPVTPCPYCGNELPEADLDCTKCKNWI 434          
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Match: A0A2D4BXM9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXM9_PYTIN)

HSP 1 Score: 181 bits (460), Expect = 5.700e-50
Identity = 87/152 (57.24%), Postives = 116/152 (76.32%), Query Frame = 1
Query:    4 KVAHGILYETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQEHRGQIDKKYRRNIEAIVRRPNRDEEPEPMSKCPISGADVPITQLECPSTKVWV 459
            K+AH +L ET RQLE   IHV Q LR+S +LLHSYILVKK+V+RG+H  AARML+RVA+ IS FPTHV  +L S VIECQR+GLR  +++YA+TLM+ E+R  IDK+ +R IEAIVRRPN+++ P+P++ CP  G ++P   L+C   K W+
Sbjct: 1337 KMAHDVLVETHRQLESHKIHVSQELRQSLMLLHSYILVKKLVKRGEHTAAARMLVRVAKHISKFPTHVSNILISAVIECQRAGLRAYSYDYATTLMKPEYRNNIDKEIKRKIEAIVRRPNKEQAPDPVTPCPYCGNELPEADLDCTKCKNWI 1488          
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Match: A0A7S1CDP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDP1_9STRA)

HSP 1 Score: 179 bits (454), Expect = 3.630e-49
Identity = 90/147 (61.22%), Postives = 111/147 (75.51%), Query Frame = 1
Query:    4 KVAHGILYETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQEHRGQIDKKYRRNIEAIVRRPNRDEEPEPMSKCPISGADVPITQLECPS 444
            KVAH IL+ET + LE Q I VPQ+L RS  LLHSYILVKK+V++ +HE AARML+RVA+ IS FP+H+VP+LTSTVIECQR+GL+ SAFEYAS LMR E+R QI+ K +R IE +VRRPN +E  E    CP     +  + LECPS
Sbjct: 1164 KVAHSILFETHKDLEAQNIRVPQALARSLRLLHSYILVKKLVKQNNHEAAARMLIRVAKHISKFPSHIVPILTSTVIECQRAGLKRSAFEYASMLMRPEYRTQIEPKLKRKIEQLVRRPNTEEAEEEQRPCPFCSTPLSASTLECPS 1310          
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Match: K3W6I9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6I9_GLOUD)

HSP 1 Score: 178 bits (451), Expect = 9.190e-49
Identity = 87/152 (57.24%), Postives = 113/152 (74.34%), Query Frame = 1
Query:    4 KVAHGILYETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQEHRGQIDKKYRRNIEAIVRRPNRDEEPEPMSKCPISGADVPITQLECPSTKVWV 459
            KVAH +L ET RQLE   IHV Q LR + +LLHSYILVKK+V+RGDH  AARML+RVA+ IS FPTHV  +L S VIECQR+GLR  +++YA+TLM+ E+R  IDK+ +R IEAIVRRPN+++ P+P + CP    ++    L+CP  K W+
Sbjct: 1161 KVAHDVLVETHRQLEAHKIHVSQDLRNALMLLHSYILVKKLVKRGDHMAAARMLVRVAKDISKFPTHVANILISAVIECQRAGLRAYSYDYATTLMKPEYRNTIDKEIKRKIEAIVRRPNKEQAPDPTTPCPYCTNELAEADLDCPHCKNWI 1312          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1269.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE11_9PHAE1.710e-8694.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIK0_ECTSI2.970e-8595.30WD repeat membrane protein n=1 Tax=Ectocarpus sili... [more]
A0A835ZAW6_9STRA6.550e-5870.27WD repeat membrane protein n=1 Tax=Tribonema minus... [more]
F0YFC0_AURAN1.210e-5765.77Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2AWF5_9STRA3.030e-5764.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2V6K7_9STRA4.440e-5372.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4CLP2_PYTIN7.840e-5357.89Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A2D4BXM9_PYTIN5.700e-5057.24Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S1CDP1_9STRA3.630e-4961.22Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
K3W6I9_GLOUD9.190e-4957.24Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1269contigP-littoralis_Contig1269:1264..2548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIK0
Preferred nameFAP66
PFAMsANAPC4_WD40,Coatomer_WDAD,WD40_3
Model size480
Max annot lvl2759|Eukaryota
KEGG koko:K19671
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.87e-86
EggNOG OGsKOG2247@1|root,KOG2247@2759|Eukaryota
Ec32 ortholog descriptionWD repeat membrane protein
Ec32 orthologEc-27_000050.1
Descriptionmyotome development
Cds size480
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789560.169252-CDS-P-littoralis_Contig1269:1263..13771680789560.169252-CDS-P-littoralis_Contig1269:1263..1377Pylaiella littoralis U1_48CDSP-littoralis_Contig1269 1264..1377 +
1680789560.1820397-CDS-P-littoralis_Contig1269:1658..18411680789560.1820397-CDS-P-littoralis_Contig1269:1658..1841Pylaiella littoralis U1_48CDSP-littoralis_Contig1269 1659..1841 +
1680789560.1937099-CDS-P-littoralis_Contig1269:2365..25481680789560.1937099-CDS-P-littoralis_Contig1269:2365..2548Pylaiella littoralis U1_48CDSP-littoralis_Contig1269 2366..2548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1269.2.1prot_P-littoralis_Contig1269.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1269 1264..2548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1269.2.1

>prot_P-littoralis_Contig1269.2.1 ID=prot_P-littoralis_Contig1269.2.1|Name=mRNA_P-littoralis_Contig1269.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
MKVAHGILYETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEG
AARMLLRVARSISHFPTHVVPVLTSTVIECQRSGLRNSAFEYASTLMRQE
HRGQIDKKYRRNIEAIVRRPNRDEEPEPMSKCPISGADVPITQLECPSTK
VWVKSPKWG*
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mRNA from alignment at P-littoralis_Contig1269:1264..2548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1269.2.1 ID=mRNA_P-littoralis_Contig1269.2.1|Name=mRNA_P-littoralis_Contig1269.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1285bp|location=Sequence derived from alignment at P-littoralis_Contig1269:1264..2548+ (Pylaiella littoralis U1_48)
ATGAAGGTGGCGCACGGAATCCTGTACGAGACGATCCGTCAGCTGGAGGA CCAGGGGATACACGTACCGCAGTCCCTTCGTCGAAGCTTTGTACTGCTGC ACAGCTACATTTTGGTGAGTTAGCATTTTTGACTTGTACCATGGTGGCAC GATGTGTAGCAGCAAAGCAAACATTTGTTTGTAACCCTTCAACCGCCCCG AAAGCTGGGAATATGCAACAAGCGGGGGGGGGGGGGGGATGAATGCATGC CGCCAACGAAGCAAGAACAAATATAATGCTTCATGTTCTTGTGTGGCCAc cCCCCCCCCCCCGAGACGGGACCCTCCCCGCGCGCCCCCGCACAATGTGT ACTTTTACAAACAAGTTAAACAAAAAAAACGTCAAACACGTGTAGGTGAA GAAAATGGTCCGGCGTGGAGATCACGAGGGTGCGGCCCGAATGCTCCTGA GGGTTGCCCGCAGCATCTCCCACTTCCCGACGCATGTCGTGCCCGTGCTG ACGTCCACCGTCATCGAATGCCAGAGGTCGGGGCTGAGAAACTCGGCCTT CGAGTACGCGTCTACGCTCATGCGACAGGTGTTTTTTTTTTTATGGGGGG TACGTGGTGCGTGCCAGCTCTCATGATTTCCTTGACTCGGGGAAATTCAT TGCGGTTGGGGAGAAAGTCAAGCGCGACAATCTGTTGCAGCAAGGAGTTC AAGCTAGCCTTTTGCTGTCGCCTGTATCGACAGGTGTACGCGCGTGTATG TGCGTATGCGCAACCCGATCTTCGAGTATCCGTCGCTGTTCATGCAACTT GCAAGAGGCGGGTTGGCGGGGGGGGAGGGGGGATAAGTGTAGGGCATCAC CCAAGTGTAGCCATTGACGTTATTGCTTTTTTTTTCTGCTGAAAGGAGTA GATAATTGTTAAAGAATACACACACCATATCTTGGCAATATCGAGTGAGA GAGAGAAAGACAGCACGCTCTTCTTATTTCCCCGCCCCCACCCCGGCCCC CGCCCGCACCTCACACCCCTTTTGTTGCATGTCGCCTTCTGTGTTCTGCA ACTCCCCCCTTTTTCATTCGTTCCTTCCTTCCCTCCCTCCCCACCTCCCA AGGAGCACCGAGGACAAATCGACAAGAAGTACCGCCGCAACATCGAGGCG ATAGTGCGCCGTCCCAACCGCGATGAAGAACCGGAGCCGATGTCCAAGTG CCCGATTAGCGGGGCGGACGTGCCGATAACCCAGCTTGAGTGCCCGTCAA CCAAGGTGTGGGTGAAATCTCCTAAATGGGGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1269:1264..2548+

>mRNA_P-littoralis_Contig1269.2.1 ID=mRNA_P-littoralis_Contig1269.2.1|Name=mRNA_P-littoralis_Contig1269.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig1269:1264..2548+ (Pylaiella littoralis U1_48)
ATGAAGGTGGCGCACGGAATCCTGTACGAGACGATCCGTCAGCTGGAGGA
CCAGGGGATACACGTACCGCAGTCCCTTCGTCGAAGCTTTGTACTGCTGC
ACAGCTACATTTTGGTGAAGAAAATGGTCCGGCGTGGAGATCACGAGGGT
GCGGCCCGAATGCTCCTGAGGGTTGCCCGCAGCATCTCCCACTTCCCGAC
GCATGTCGTGCCCGTGCTGACGTCCACCGTCATCGAATGCCAGAGGTCGG
GGCTGAGAAACTCGGCCTTCGAGTACGCGTCTACGCTCATGCGACAGGAG
CACCGAGGACAAATCGACAAGAAGTACCGCCGCAACATCGAGGCGATAGT
GCGCCGTCCCAACCGCGATGAAGAACCGGAGCCGATGTCCAAGTGCCCGA
TTAGCGGGGCGGACGTGCCGATAACCCAGCTTGAGTGCCCGTCAACCAAG
GTGTGGGTGAAATCTCCTAAATGGGGATGA
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