mRNA_P-littoralis_Contig1264.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1264.15.1
Unique NamemRNA_P-littoralis_Contig1264.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1264.15.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.550e-21
Identity = 73/145 (50.34%), Postives = 93/145 (64.14%), Query Frame = 1 
Query:    1 GVHPSERAAQAAGERQASDQRRVFATMM---QEKVSEILRTVMVDKALELQAEIDQLVKFELHDPSGGPKTNSPAQAPKKGRHTNKRGG--------------GATGSAPPTTGNPEGRLENSRRNTRMRYSWGPGSG---KRIK 375
            GVHPSERAA+AA  R A+D+RRVFA+MM   +E VSEILRTV   KA+E+QA++D+ V+F+L + +G     +PAQ  K GR    + G              G TGSA P  GNP+GR++ SRR  RMR S GPGSG   +RIK
Sbjct:  454 GVHPSERAAKAAAARSATDERRVFASMMAKSKENVSEILRTVPHAKAMEIQADLDKWVRFQLAEATGQNSAKNPAQVKKAGRPKKSKSGEQQEKRGDGNGAPPGQTGSAKPV-GNPQGRMDKSRRAKRMRDSAGPGSGGPSRRIK 597
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BLAST of mRNA_P-littoralis_Contig1264.15.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.640e-17
Identity = 67/151 (44.37%), Postives = 92/151 (60.93%), Query Frame = 1 
Query:    1 GVHPSERAAQAAGERQASDQRRVFATMM---QEKVSEILRTVMVDKALELQAEIDQLVKFELHDPSGGPKTNSPAQAPKKGRHTNKRGGGA-------------TGSAPPTTGNPEGRLENSRRNTRMRYSWGPGSGKRIK--TKK*TATR 399
            GVHP+ERAA+A  +R  SD RRVFAT+M   +E V+EI+RTV   KALE+QAE+D+ V+FEL + +G  K+ +PAQ   KGR    +  G+             +GS  P  GNPEGR + SRR   ++   G GSG + +  TK+ T+ R
Sbjct:  411 GVHPAERAAKAVADRSGSDHRRVFATLMAKNKENVTEIMRTVPHAKALEIQAELDKWVRFELAEATGENKSGNPAQVKAKGRPKKSKSEGSKQDRHDDNGAPADSGSVQPV-GNPEGRRDKSRREKMIKDVSGAGSGAKTRRPTKEKTSLR 560
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BLAST of mRNA_P-littoralis_Contig1264.15.1 vs. uniprot
Match: A0A6H5JYU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.130e-13
Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 1 
Query:    1 GVHPSERAAQAAGERQASDQRRVFATMM---QEKVSEILRTVMVDKALELQAEIDQLVKFELHDPSGGPKTNSPAQAPKKGRHTNKRGGGA-------------TGSAPPTTGNPEGRLENSRR 324
            GVHP+E AA+AA ER ASD R VFAT+M   +E V+E  RT    KALE+QAE+D+ V+F+L D +G  K+ +PAQ   KGR    +  G+             +GS  P  GNPEGR + SRR
Sbjct:  341 GVHPAESAAKAAAERSASDHRHVFATLMAKNKENVTETRRTAPHAKALEIQAELDKWVRFQLADATGENKSGNPAQVKAKGRPNKSKSEGSKQDRHDDNGAPADSGSVQPV-GNPEGRTDKSRR 463
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BLAST of mRNA_P-littoralis_Contig1264.15.1 vs. uniprot
Match: A0A6H5LMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMA8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.920e-7
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:   88 EKVSEILRTVMVDKALELQAEIDQLVKFELHDPSGGPKTNSPAQAPKKGRHTNKRGGGA-------------TGSAPPTTGNPEGRLENSRRNTRMRYSW 348
            E V+EI+RTV   KALE+QAE+D+ V+F+L + +G  K+ + AQ   KGR    +  G+             +GS  P  GNPEGR + SRR  R++  W
Sbjct:    6 ESVTEIMRTVPHAKALEIQAELDKWVRFQLAEATGENKSGNSAQVKAKGRPKKSKSEGSKQDRHDDNGAPADSGSVQPV-GNPEGRRDKSRREKRIKEVW 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1264.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JY17_9PHAE3.550e-2150.34SWIM-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5L2H3_9PHAE8.640e-1744.37SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYU5_9PHAE1.130e-1346.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LMA8_9PHAE5.920e-740.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1264contigP-littoralis_Contig1264:18545..19590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1046
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789559.085195-UTR-P-littoralis_Contig1264:18544..192031680789559.085195-UTR-P-littoralis_Contig1264:18544..19203Pylaiella littoralis U1_48UTRP-littoralis_Contig1264 18545..19203 -
1680789559.1157517-UTR-P-littoralis_Contig1264:19512..195901680789559.1157517-UTR-P-littoralis_Contig1264:19512..19590Pylaiella littoralis U1_48UTRP-littoralis_Contig1264 19513..19590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789559.0949488-CDS-P-littoralis_Contig1264:19203..195121680789559.0949488-CDS-P-littoralis_Contig1264:19203..19512Pylaiella littoralis U1_48CDSP-littoralis_Contig1264 19204..19512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1264.15.1prot_P-littoralis_Contig1264.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1264 19204..19512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1264.15.1

>prot_P-littoralis_Contig1264.15.1 ID=prot_P-littoralis_Contig1264.15.1|Name=mRNA_P-littoralis_Contig1264.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MMQEKVSEILRTVMVDKALELQAEIDQLVKFELHDPSGGPKTNSPAQAPK
KGRHTNKRGGGATGSAPPTTGNPEGRLENSRRNTRMRYSWGPGSGKRIKT
KK*
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mRNA from alignment at P-littoralis_Contig1264:18545..19590-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1264.15.1 ID=mRNA_P-littoralis_Contig1264.15.1|Name=mRNA_P-littoralis_Contig1264.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1046bp|location=Sequence derived from alignment at P-littoralis_Contig1264:18545..19590- (Pylaiella littoralis U1_48)
GGCGTGCACCCATCAGAACGTGCAGCGCAGGCAGCTGGAGAACGACAAGC
GTCTGACCAGCGCCGAGTGTTCGCGACTATGATGCAGGAAAAAGTCAGCG
AAATTCTTAGGACGGTTATGGTCGACAAGGCGCTGGAGCTACAGGCAGAA
ATTGACCAGCTGGTCAAGTTCGAGCTTCATGACCCGAGCGGTGGCCCAAA
GACAAACAGTCCAGCGCAAGCCCCGAAGAAAGGGAGACATACAAATAAGA
GGGGGGGCGGGGCGACCGGCTCTGCTCCGCCAACAACCGGCAACCCTGAG
GGGCGGCTGGAGAACAGCCGAAGGAATACAAGGATGAGATACAGTTGGGG
GCCTGGATCGGGGAAAAGGATTAAGACGAAGAAATGAACCGCCACTCGTG
AACCCGAAGGGTAGCGTTAGCGGGCAACCCATGTGGCGGGGGGGGCGGGG
CGCTTGCGTGGGACAGGAGGTAAAGTCGGCGTTATTGAGAGGGCGCCCAT
GACACCATTAAATGTTCGTATTCCTCGTTCAATAGCCACACCCCGGGGTG
CAAGGGACCGTTGGCCATCTCCGAGTGAAGCGGACGAGATTGCTTAGAAG
ACAAGCCTGTAAGGAGCGAACATGAACTATGGTCAAATTTCGACCTATCC
CTCCTAGAATGTTTTGCACCTGTGTTTAAAATCCTTGTGTTTAAAATCGC
TATATCTACACAAGGTTGCCGACGATCACAGCTCGACCAGGCCGCCATAG
GGCAACGTCGCGCCTTATGGGAGGAGGACAAGGAATAGATGTAGCGGGGC
CGGCAGGGGGAATGTACGCAACTGCTTGTTTGTCTATCACACTCCCTTAC
CCAACGCAATATCATTACGGTTACATTTTGGCCAATCGCCATGCGGATTC
ACCGTAACTAAACATCTATGATAGATGCGAGCCGTGGAAGCACAATGCAA
GTTATTGTGAGCCGAACAATTCCCAGTACGCAGAGTTATGCCTGAGGGAG
CAGTCAAGCTTATCTGCTCCCCCAGGCCCAAGCACCGCTGGGACCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1264:18545..19590-

>mRNA_P-littoralis_Contig1264.15.1 ID=mRNA_P-littoralis_Contig1264.15.1|Name=mRNA_P-littoralis_Contig1264.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig1264:18545..19590- (Pylaiella littoralis U1_48)
ATGATGCAGGAAAAAGTCAGCGAAATTCTTAGGACGGTTATGGTCGACAA
GGCGCTGGAGCTACAGGCAGAAATTGACCAGCTGGTCAAGTTCGAGCTTC
ATGACCCGAGCGGTGGCCCAAAGACAAACAGTCCAGCGCAAGCCCCGAAG
AAAGGGAGACATACAAATAAGAGGGGGGGCGGGGCGACCGGCTCTGCTCC
GCCAACAACCGGCAACCCTGAGGGGCGGCTGGAGAACAGCCGAAGGAATA
CAAGGATGAGATACAGTTGGGGGCCTGGATCGGGGAAAAGGATTAAGACG
AAGAAATGA
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