mRNA_P-littoralis_Contig1264.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1264.11.1
Unique NamemRNA_P-littoralis_Contig1264.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1264.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1264contigP-littoralis_Contig1264:13816..14395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size569
Hectar predicted targeting categorymitochondrion
Exons2
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789559.0295362-UTR-P-littoralis_Contig1264:13815..138891680789559.0295362-UTR-P-littoralis_Contig1264:13815..13889Pylaiella littoralis U1_48UTRP-littoralis_Contig1264 13816..13889 +
1680789559.0392144-UTR-P-littoralis_Contig1264:13900..139251680789559.0392144-UTR-P-littoralis_Contig1264:13900..13925Pylaiella littoralis U1_48UTRP-littoralis_Contig1264 13901..13925 +
1680789559.0556247-UTR-P-littoralis_Contig1264:14312..143951680789559.0556247-UTR-P-littoralis_Contig1264:14312..14395Pylaiella littoralis U1_48UTRP-littoralis_Contig1264 14313..14395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789559.0473688-CDS-P-littoralis_Contig1264:13925..143121680789559.0473688-CDS-P-littoralis_Contig1264:13925..14312Pylaiella littoralis U1_48CDSP-littoralis_Contig1264 13926..14312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1264.11.1prot_P-littoralis_Contig1264.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1264 13926..14312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1264.11.1

>prot_P-littoralis_Contig1264.11.1 ID=prot_P-littoralis_Contig1264.11.1|Name=mRNA_P-littoralis_Contig1264.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MLLRKAVVVGSSACVYPPASPPPAHPVQHWANRRNTPIFFMSTIFHDLLP
KLLSQISTNILVVRLTRPNNERLRDVFRIQANVLQSAGVRKNNVTANACF
FPGHKWVVANKTYLCCQLNVSLFMGTMH*
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mRNA from alignment at P-littoralis_Contig1264:13816..14395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1264.11.1 ID=mRNA_P-littoralis_Contig1264.11.1|Name=mRNA_P-littoralis_Contig1264.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=580bp|location=Sequence derived from alignment at P-littoralis_Contig1264:13816..14395+ (Pylaiella littoralis U1_48)
ATTGGGCTCGGGGCCAGGTCGGGTCGTTCAAACAAATTTGTTAAGAAAAA
TGGCACGCAGAAAACAAAAAATGAGCTAAATAGAGAAAGAAGTAAACGCT
TTCCTCGAACATGCTACTCCGAAAGGCAGTGGTTGTTGGATCATCGGCTT
GCGTTTATCCTCCTGCGTCCCCTCCACCCGCCCACCCAGTGCAACATTGG
GCAAATAGAAGGAACACGCCAATATTCTTCATGTCAACCATTTTCCACGA
CCTACTGCCTAAGCTCCTCTCACAAATTTCGACGAATATTCTCGTGGTGA
GGTTGACGAGACCCAACAACGAACGGCTGAGAGACGTTTTTAGGATCCAG
GCAAACGTGCTGCAGTCCGCGGGCGTTCGGAAGAACAACGTGACAGCAAA
TGCATGTTTCTTTCCAGGACACAAGTGGGTTGTTGCAAACAAAACGTATT
TGTGTTGCCAACTCAACGTGTCATTGTTCATGGGTACGATGCATTAGTAA
ACCATTACTTCCTCTGTATCATAAATCTGGGCTGTTAGGTGCGTGTAATT
GTTTGCGCATCCATACTGTTTCGATCATCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1264:13816..14395+

>mRNA_P-littoralis_Contig1264.11.1 ID=mRNA_P-littoralis_Contig1264.11.1|Name=mRNA_P-littoralis_Contig1264.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig1264:13816..14395+ (Pylaiella littoralis U1_48)
ATGCTACTCCGAAAGGCAGTGGTTGTTGGATCATCGGCTTGCGTTTATCC
TCCTGCGTCCCCTCCACCCGCCCACCCAGTGCAACATTGGGCAAATAGAA
GGAACACGCCAATATTCTTCATGTCAACCATTTTCCACGACCTACTGCCT
AAGCTCCTCTCACAAATTTCGACGAATATTCTCGTGGTGAGGTTGACGAG
ACCCAACAACGAACGGCTGAGAGACGTTTTTAGGATCCAGGCAAACGTGC
TGCAGTCCGCGGGCGTTCGGAAGAACAACGTGACAGCAAATGCATGTTTC
TTTCCAGGACACAAGTGGGTTGTTGCAAACAAAACGTATTTGTGTTGCCA
ACTCAACGTGTCATTGTTCATGGGTACGATGCATTAG
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