mRNA_P-littoralis_Contig1264.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1264.10.1
Unique NamemRNA_P-littoralis_Contig1264.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1264.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1264contigP-littoralis_Contig1264:13357..13729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size365
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789558.9291124-CDS-P-littoralis_Contig1264:13356..135611680789558.9291124-CDS-P-littoralis_Contig1264:13356..13561Pylaiella littoralis U1_48CDSP-littoralis_Contig1264 13357..13561 -
1680789558.9385786-CDS-P-littoralis_Contig1264:13570..135811680789558.9385786-CDS-P-littoralis_Contig1264:13570..13581Pylaiella littoralis U1_48CDSP-littoralis_Contig1264 13571..13581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789558.951833-UTR-P-littoralis_Contig1264:13581..137291680789558.951833-UTR-P-littoralis_Contig1264:13581..13729Pylaiella littoralis U1_48UTRP-littoralis_Contig1264 13582..13729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1264.10.1prot_P-littoralis_Contig1264.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1264 13357..13581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1264.10.1

>prot_P-littoralis_Contig1264.10.1 ID=prot_P-littoralis_Contig1264.10.1|Name=mRNA_P-littoralis_Contig1264.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MNDQLFTHTCGTMYNHQAPPAAPPCHHSRRATSYKIISNMLRGIMLACPY
NGFSSSHWPCVADNLACRELAI
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mRNA from alignment at P-littoralis_Contig1264:13357..13729-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1264.10.1 ID=mRNA_P-littoralis_Contig1264.10.1|Name=mRNA_P-littoralis_Contig1264.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=373bp|location=Sequence derived from alignment at P-littoralis_Contig1264:13357..13729- (Pylaiella littoralis U1_48)
AGAGGATGGCTAGGTTGGCAACTCGCGCTCCGTGCTGGGACAGCTGCAGA
GACGCGTCAGAGCCCACGGAAACTTCCACAAAATGTCAATTTTAACGACC
AATTCCGTGAGCAGTCCTAAAATTTGAAATTTTCGGTAAGTCCCGGCTAT
GAACGACCAGTTGCTGAGACTCTTCACCCACACGTGTGGTACCATGTACA
ACCATCAAGCACCTCCAGCCGCTCCACCTTGCCACCATAGCCGCCGCGCC
ACAAGTTATAAGATAATCAGCAACATGCTGAGGGGAATCATGCTGGCATG
TCCGTACAACGGGTTCTCTTCTTCGCACTGGCCCTGTGTAGCAGACAATC
TGGCTTGTCGTGAGCTAGCGATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1264:13357..13729-

>mRNA_P-littoralis_Contig1264.10.1 ID=mRNA_P-littoralis_Contig1264.10.1|Name=mRNA_P-littoralis_Contig1264.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig1264:13357..13729- (Pylaiella littoralis U1_48)
ATGAACGACCAACTCTTCACCCACACGTGTGGTACCATGTACAACCATCA
AGCACCTCCAGCCGCTCCACCTTGCCACCATAGCCGCCGCGCCACAAGTT
ATAAGATAATCAGCAACATGCTGAGGGGAATCATGCTGGCATGTCCGTAC
AACGGGTTCTCTTCTTCGCACTGGCCCTGTGTAGCAGACAATCTGGCTTG
TCGTGAGCTAGCGATT
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