mRNA_P-littoralis_Contig1263.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1263.2.1
Unique NamemRNA_P-littoralis_Contig1263.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 1.130e-93
Identity = 169/296 (57.09%), Postives = 183/296 (61.82%), Query Frame = 1
Query:   34 MIAELLKGSNNGVLGHGDLKRVAAMYQQTPKTVSKYWKMYNQKKEAGEEDPDLHNKRKGNSGQKGIDIAALKVVLQEIPLKNRTTIRSIAAALEIPTSTLFDNLKNLGLRSCLRFLKPLLSDDGKAQRLAWALR*VRFSPGGARKFHNFFDFVHLDEKWFYICKQGQRYYCYEGEDLPVRKVQHKSHVIKVMFLAAVARPRYDSGRNRQFDGKIGIYPFTVQRAAQRNSRNRAAGTMVTHSVEVNRATYNEKLINNVFPDIRAKFPASPIIFAQQDNAPGHRVLADPDVVAAAGQG 921
            M+AELLKGSNNGVL HGD+KRVAA+++QTPKT                                                                                                L+WALR VR S G A KFH+FFDF+HLDEKWFYICKQGQRYY YEGE LP+RKVQHKSHVIKVMFLAAVARPRYDS R+RQFDGKIGIYPFTVQRAAQRN RN AAGTMVTHSVEVNR  Y +KL NNVFPDIRAKFP+SPIIFAQQ+NAPGHR + DPDVVAAAGQG
Sbjct:    1 MVAELLKGSNNGVLSHGDVKRVAAIHKQTPKT-----------------------------------------------------------------------------------------------GLSWALRWVRPSAGDAHKFHHFFDFLHLDEKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLY-KKLNNNVFPDIRAKFPSSPIIFAQQENAPGHRAMEDPDVVAAAGQG 200          
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 4.070e-73
Identity = 120/143 (83.92%), Postives = 127/143 (88.81%), Query Frame = 1
Query:   34 MIAELLKGSNNGVLGHGDLKRVAAMYQQTPKTVSKYWKMYNQKKEAGEEDPDLHNKRKGNSGQKGIDIAALKVVLQEIPLKNRTTIRSIAAALEIPTSTLFDNLKNLGLRSCLRFLKPLLSDDGKAQRLAWALR*VRFSPGGA 462
            M+AELLKGSNNG L HGD+KRV A+Y+QTPKTVSKYWK+YNQKKEAGEEDPDLHNKRKGNSGQKG+DIA LK  LQ+I LKNRTTIRSIAAAL IP STLFDNL NLGLRSC RFLKPLLSDD KAQRLAWALR VR S G A
Sbjct:    1 MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSAGDA 143          
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Match: W2NW41_PHYPR (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NW41_PHYPR)

HSP 1 Score: 202 bits (513), Expect = 7.890e-57
Identity = 122/307 (39.74%), Postives = 182/307 (59.28%), Query Frame = 1
Query:    7 NLTPPEKRGMIAELLKGSNNGVLGHGDLKRVAAMYQQTPKTVSKYWKMYNQKKEAGEEDP--DLHNKRKGNSGQKGIDIAALKVVLQEIPLKNRTTIRSIAAALEIPTSTLFDNLKNLGLRSCLRFLKPLLSDDGKAQRLAWALR*VRFSPGGARKFHNFFDFVHLDEKWFYICKQGQRYYCYEGEDLPVRKVQHKSHVIKVMFLAAVARPRYDSGRNRQFDGKIGIYPFTVQRAAQRNSRNRAAGTMVTHSVE-VNRATYNEKLINNVFPDIRAKFPASP---IIFAQQDNAPGHRVLADPDVVAA 909
            NLTP +++ ++  LL  S+NG +  GD+    A Y++   T+S+ W+++  KK   EE+   +L +   GN G+K ID   L++ +++IPL  R TI+S+AAAL + T+ +   LK    R     +KP L+++ +  R+ +AL       GG   F + FD VH+DEKWF      + YY    E+ PVR+ Q K  + K MF+AAVARPRYD+ R + FDGKIGI+ F  +  A+R S+NR  GT+V  +VE V+R  Y    I ++ P I+AK+P S     I+ QQDNA  H  + DPD++AA
Sbjct:    5 NLTPTQRQTIVCFLLDRSDNGEISGGDISAAVAKYERHRSTISRLWELH--KKTQTEENRLGNLASGLIGNCGRKAIDTDELRLQIRKIPLSRRMTIKSLAAALGVSTTVIRRLLKEGAFRRHSSNVKPALTEENRLARVQFALSHTTRKRGGEMVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEPVRQRQSKRFISKTMFIAAVARPRYDAHRKQAFDGKIGIWAFAEEYEAKRTSKNRPKGTIVLRNVESVDREAYKATHIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPHVSVDDPDIMAA 309          
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Match: A0A6A4ZBD2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZBD2_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.780e-56
Identity = 114/297 (38.38%), Postives = 174/297 (58.59%), Query Frame = 1
Query:   10 LTPPEKRGMIAELLKGSNNGVLGHGDLKRVAAMYQQTPKTVSKYWKMYNQKKEAGEEDPDLHNKRKGNSGQKGIDIAA-LKVVLQEIPLKNRTTIRSIAAALEIPTSTLFDNLKNLG-LRSCLRFLKPLLSDDGKAQRLAWALR*VRFSPGGARKFHNFFDFVHLDEKWFYICKQGQRYYCYEGEDLPVRKVQHKSHVIKVMFLAAVARPRYDSGRNRQFDGKIGIYPFTVQRAAQRNSRNRAAGTMVTHSVEVNRATYNEKLINNVFPDIRAKFPASPI---IFAQQDNAPGHRVL 885
            LTP E+R     LL+ S NG L +G LK VA  ++   KT+S+ WK        G    D+ +K KGNSG+K   +A   +  ++ +P   R T+RS+AA   +P +++  +++    L+S   ++KP+L++D    RL +A   VR  P G   F +  ++VH+DEKWFY+ +  +++Y Y+ E++ +R V+ K  + KVMFLAAVARP+YD  RN  FDGK+G++PF V   A+RNS+NRA G  V     V+   Y + +I+ V P I  +FP   +   +  QQDNA  HR +
Sbjct:   12 LTPTERRAAYELLLQSSTNGRLKYGALKEVATYFKCHWKTISRVWKRGRLSLSDGSPHADVDSKLKGNSGRKKSRLADDFEGAIKAVPQHQRQTLRSLAAHCGLPKTSIVRHMQETKRLKSRASYVKPMLTEDNTKARLDFAKSFVRLLPSGNHAFVDMNEYVHVDEKWFYLTRVKRKFYVYDDEEVALRAVKSKQFITKVMFLAAVARPQYDHTRNAYFDGKVGVWPFVVVEPAKRNSKNRAKGAPVVVPQVVDGKVYKKAIIDKVIPAILERFPPRTLARGVVIQQDNASPHRCV 308          
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Match: A0A6A4Z289_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z289_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.910e-56
Identity = 116/299 (38.80%), Postives = 175/299 (58.53%), Query Frame = 1
Query:    4 KNLTPPEKRGMIAELLKGSNNGVLGHGDLKRVAAMYQQTPKTVSKYWKMYNQKKEAGEEDPDLHNKRKGNSGQKGIDIA-ALKVVLQEIPLKNRTTIRSIAAALEIPTSTLFDNLKNLG-LRSCLRFLKPLLSDDGKAQRLAWALR*VRFSPGGARKFHNFFDFVHLDEKWFYICKQGQRYYCYEGEDLPVRKVQHKSHVIKVMFLAAVARPRYDSGRNRQFDGKIGIYPFTVQRAAQRNSRNRAAGTMVTHSVEVNRATYNEKLINNVFPDIRAKFPASPI---IFAQQDNAPGHRVL 885
            +NL+  E+R +   LL+ S NG L    L+ +A  Y+    T S+ W+       +G    D+ +K KGNSG+  +  A  ++  ++ +P  +R T+RS+AA   +P ST+  ++K    L++   ++KPLL++     R+   LR +R  PGG R F N  D+VH+DEKWF++ K  +R+Y Y+ E+L +R V+ K  + KVMFLAAVARPRYD    ++FD KIGI+PF     A+R S+NRA GT V     V+   Y   +++ V P I+AKFP +     I+ QQDNA  HR +
Sbjct:   20 RNLSDVERRALYERLLQLSVNGSLPPQALRHIALEYKCHRSTASRVWQRGQASTTSGHLLADVASKIKGNSGRNKLRTAHEIEAAVKSVPHHDRQTLRSLAANSHLPKSTIVRHMKEEARLKARSSYVKPLLTEVNMVARVEHCLRFLRVMPGGGRVFENMHDYVHVDEKWFFLTKVNRRFYVYDDEELALRSVKSKRFITKVMFLAAVARPRYDHHTKKEFDRKIGIWPFVEHTLAKRTSKNRARGTPVITPQTVDSGVYQAAILDKVTPAIKAKFPRTSQRSEIYIQQDNASPHRCV 318          
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Match: UPI000CD9DCB3 (uncharacterized protein LOC111916103 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9DCB3)

HSP 1 Score: 197 bits (502), Expect = 2.290e-55
Identity = 125/311 (40.19%), Postives = 176/311 (56.59%), Query Frame = 1
Query:    1 RKNLTPPEKRGMIAELLKGSNNGVLGHGDLKRVAAMYQQTPKTVSKYWKMYNQKKEAGEEDPDLHNKRKGNSGQKGIDIAALKVVLQEIPLKNRTTIRSIAAALEIPTSTLFDNLKNLGLRSCLRFLKPLLSDDGKAQRLAWALR*VR----FSPGGARKFHNFFDFVHLDEKWFYICKQGQRYYCYEGEDLPVRKVQHKSHVIKVMFLAAVARPRYDSGRNRQFDGKIGIYPFTVQRAAQRNSRNRAAGTMVTHSV-EVNRATYNEKLINNVFPDIRAKFPASPI--IFAQQDNAPGHRVLADPDVVAAA 912
            +KN T  +++ +   LL+ S +G L  G +  VA+++  + +TVS+ W     + + G    D  +      GQK + I   +V   EIPL++R+ IRS+A +L +  STL   +K   LR     +KP L+ + +  RL + L  +     FSP     FH+ F+ VH+DEKWFY+ K  +RYY   G+D P+R  + K  + K+MFLAAVARPRYDS  N  F GKIGIYPFT    A+R+S+NR AGTM T  +  VN+      LI  V PDIRAK+P      IF QQDNA  H  + D + + AA
Sbjct:   10 KKNTTIAQRQAIFQSLLQESFDGRLKKGSVSEVASLFSVSKRTVSRIWHQGKNQVDHGLP-VDFSSNMPMVVGQKRVQINLNQV--SEIPLRHRSNIRSLAKSLNVSKSTLHRRIKEGVLRPHTNVIKPTLTHENRRARLEYCLSKITLSSLFSP--IPTFHDMFNVVHIDEKWFYMSKPSKRYYLVPGDDEPLRTCKSKKFITKIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTLEPAKRSSKNRVAGTMETKPILSVNKEVTRSWLIEKVLPDIRAKWPRGHTGPIFIQQDNAKPHIDVDDSEFLEAA 315          
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Match: W2PWX2_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PWX2_PHYPN)

HSP 1 Score: 194 bits (493), Expect = 3.140e-55
Identity = 120/311 (38.59%), Postives = 177/311 (56.91%), Query Frame = 1
Query:    1 RKNLTPPEKRGMIAELLKGSNNGVLGHGDLKRVAAMYQQTPKTVSKYWKMYNQKKEAGEEDPDLHNKRKGNSGQKGIDIAA----LKVVLQEIPLKNRTTIRSIAAALEIPTSTLFDNLKNLGLRSCLRFLKPLLSDDGKAQRLAWALR*VRFSPGGARKFHNFFDFVHLDEKWFYICKQGQRYYCYEGEDLPVRKVQHKSHVIKVMFLAAVARPRYDSGRNRQFDGKIGIYPFTVQRAAQRNSRNRAAGTMVTHSVEVNRATYNEKLINNVFPDIRAKFPASPIIFAQQDNAPGHRVLADPDVVAAAGQG 921
            RKNLTP E+  +IA LLK S       G +   +  Y+ +   +++ W+   Q  ++G    +  + RKG SG+K          L   ++  P + RT IR++A++L I  S+L D       R     LKPLLSD  +A RL +A   V   P   R F +F ++VHLDEKWFY+ K+ QR+Y    E+ P   V++K++++KVMFL AVARPR+DS R+R +DGKI ++PF V   A+R+S+NR AGT+   +  V++  Y + L   V P ++A +P+   +F Q DNA  H    DP+VVAA   G
Sbjct:   12 RKNLTPSERAEVIAFLLKVSIELEPPIGAIAACSTKYECSDDQIARLWRRALQDIKSGNA-INYDSDRKGKSGRKTRLTEEFRHDLSHAIELTPFEERTDIRTLASSLGIAKSSLHDYFLAGAFRRHTTRLKPLLSDQHRADRLKFAYGFVHRGPRNTRVFDSFMNYVHLDEKWFYLKKENQRFYLGTHEEPPHLTVKNKNYIVKVMFLVAVARPRWDSKRHRIWDGKIDLWPFVVYEPAERSSKNRPAGTLELKTYNVDKDVYRQALCRMVIPSVKAVWPSGKRVFLQHDNAKPHVAADDPEVVAACSDG 321          
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Match: A0A6G0WUP2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUP2_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.850e-55
Identity = 113/297 (38.05%), Postives = 172/297 (57.91%), Query Frame = 1
Query:    4 KNLTPPEKRGMIAELLKGSNNGVLGHGDLKRVAAMYQQTPKTVSKYWKMYNQKKEAGEEDPDLHNKRKGNSGQKGI-DIAALKVVLQEIPLKNRTTIRSIAAALEIPTSTLFDNLK-NLGLRSCLRFLKPLLSDDGKAQRLAWALR*VRFSPGGARKFHNFFDFVHLDEKWFYICKQGQRYYCYEGEDLPVRKVQHKSHVIKVMFLAAVARPRYDSGRNRQFDGKIGIYPFTVQRAAQRNSRNRAAGTMVTHSVEVNRATYNEKLINNVFPDIRAKFPASPI-IFAQQDNAPGHRVL 885
            KNL+  E+R    +LL+ S  G L  G  +  A  +  +  T+++ WK      + G    D  +K KGNSG+K     AA++  ++ +   NR T+R++A    IP +T+  ++K N  L++   ++KP+L++D K +RL +A+   R S  G+  F N + +VH+DEKW Y+ K  +++Y Y+ ED+ VR V+ K  + KVMFLAAVA+PRYD    R FDGK+G++PF     A+R  +NR  GT+ T    VN + Y + ++  V P IR KFP +   I  QQDNA  HR L
Sbjct:   23 KNLSDGERRADYEQLLEMSVEGELPRGAFQCAAQRFGCSRLTIARVWKRGRASIKEGLAAADTSSKIKGNSGRKCTRSSAAIEEAIKAVSHLNRQTLRTLAVKASIPKTTILRHMKQNPRLKARSNYVKPMLTEDNKLERLKFAMSFPRPSSSGSHFFDNMYSYVHVDEKWLYLTKVRRKFYVYDDEDVAVRSVKSKGFITKVMFLAAVAKPRYDYHERRMFDGKLGVWPFVESVPAKRTIKNRPKGTIETVHQSVNASVYQKTIMEKVIPAIRQKFPQNAQEIILQQDNAGPHRPL 319          
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Match: A0A1R3HQ96_9ROSI (Transposase, Tc1-like protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HQ96_9ROSI)

HSP 1 Score: 192 bits (488), Expect = 1.640e-54
Identity = 118/294 (40.14%), Postives = 169/294 (57.48%), Query Frame = 1
Query:    4 KNLTPPEKRGMIAELLKGSNNGVLGHGDLKRVAAMYQQTPKTVSKYWKMYNQKKEAGEEDPDLHNKRKGNSGQKGIDIAALKVVLQEIPLKNRTTIRSIAAALEIPTSTLFDNLKNLGLRSCLRFLKPLLSDDGKAQRLAWALR*VRFSPGGARK--FHNFFDFVHLDEKWFYICKQGQRYYCYEGEDLPVRKVQHKSHVIKVMFLAAVARPRYDSGRNRQFDGKIGIYPFTVQRAAQRNSRNRAAGTMVTHSVEVNRATYNEKLINNVFPDIRAKFPAS-PIIFAQQDNAPGH 876
            +NLT  +++ +   LLK S +GVL  G L  +A M+  +PKT+ + WK      E G    ++ +K  GN G+K I I   KV   EIPL+ RT IRSIA AL +  ST+   +K   +R+    +KP L+D+ K  RL + L  +  +  G     F   F+ VH+DEKWF++ ++ +RYY    ED PVR  + K  + KVMFLAAVARPR+D   N +F GKIGI+PF  +  A+R S+NR AGTM T  + V +      +I  + P I++K+P     ++ QQDNA  H
Sbjct:   16 RNLTNQQRQTIYEMLLKQSKDGVLSKGSLTSLATMFSVSPKTIGRIWKQAKLCMENGLI-VNVSSKLTGNVGRKKILIDPRKV--SEIPLRRRTNIRSIAKALNMSKSTVHRRVKEGFIRAHSNAVKPDLTDENKKTRLEFCLSKLDLTNAGINTIPFDGMFNQVHIDEKWFFMTRESERYYLLPEEDEPVRTCKSKRFITKVMFLAAVARPRFDESGNVKFSGKIGIFPFVHKEPAKRKSKNRIAGTMETKPMLVTKDVTRAYMIEKILPAIKSKWPDKMETVYIQQDNAKPH 306          
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Match: UPI00125DF384 (uncharacterized protein LOC116015901 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125DF384)

HSP 1 Score: 194 bits (493), Expect = 2.570e-54
Identity = 122/283 (43.11%), Postives = 171/283 (60.42%), Query Frame = 1
Query:   79 HGDLKRVAAMYQQTPKTVSKYWKM-YNQKKEAGEEDPDLHNKRKGNSGQKGIDIAALKVVLQEIPLKNRTTIRSIAAALEIPTSTLFDNLKNLGLRSCLRFLKPLLSDDGKAQRLAWALR*VRF-SPGGARKFHNFFDFVHLDEKWFYICKQGQRYYCYEGEDLPVRKVQHKSHVIKVMFLAAVARPRYDSGRNRQFDGKIGIYPFTVQRAAQRNSRNRAAGTMVTHSVE-VNRATYNEKLINNVFPDIRAKFP--ASPIIFAQQDNAPGHRVLADPDVVAAA 912
            HG ++ VA++Y  + +TVS+ WK   +  K     D  L+    GN G+K I I+  +V    IPL  RTTIRS+A AL +  ++L   +K   L+S    +KPLL+++ +  RL + +  +   SP     F + +D VH+DEKWF++ K  Q+YY   GED P R  + K  + KVMFL AVARPR+DSGRN  FDGKIGI+PF  + AA+R S+NR AGT+VT  +E VN+    + LI+ V P IRAK+   +S  IF QQDNA  H  + D + + AA
Sbjct:   11 HGAIRDVASIYSVSTRTVSRIWKKGIDCVKHGVPVDTSLN--LTGNVGRKRIQISPDEV--SRIPLNRRTTIRSMATALNMSKTSLHRRVKEGSLKSHSNAIKPLLTEENRKVRLQFCISMIDSNSPPHNPSFIDMYDRVHIDEKWFFLSKSSQKYYLLPGEDEPYRTCKSKKFIAKVMFLCAVARPRFDSGRNEMFDGKIGIFPFIYKEAAKRRSKNREAGTLVTKPIESVNKEVTRKWLIDYVLPAIRAKWSLSSSKSIFIQQDNARPHISVNDAEFLEAA 289          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1263.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWV2_9PHAE1.130e-9357.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD91_9PHAE4.070e-7383.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W2NW41_PHYPR7.890e-5739.74HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
A0A6A4ZBD2_9STRA1.780e-5638.38Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A6A4Z289_9STRA1.910e-5638.80Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI000CD9DCB32.290e-5540.19uncharacterized protein LOC111916103 n=1 Tax=Lactu... [more]
W2PWX2_PHYPN3.140e-5538.59Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A6G0WUP2_9STRA3.850e-5538.05Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1R3HQ96_9ROSI1.640e-5440.14Transposase, Tc1-like protein n=1 Tax=Corchorus ol... [more]
UPI00125DF3842.570e-5443.11uncharacterized protein LOC116015901 n=1 Tax=Ipomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1263contigP-littoralis_Contig1263:1009..2212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI53387
Model size1204
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-12
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,3QGXT@4776|Peronosporales
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789558.8660662-UTR-P-littoralis_Contig1263:1008..17741680789558.8660662-UTR-P-littoralis_Contig1263:1008..1774Pylaiella littoralis U1_48UTRP-littoralis_Contig1263 1009..1774 -
1680789558.8895211-UTR-P-littoralis_Contig1263:2179..22121680789558.8895211-UTR-P-littoralis_Contig1263:2179..2212Pylaiella littoralis U1_48UTRP-littoralis_Contig1263 2180..2212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789558.877239-CDS-P-littoralis_Contig1263:1774..21791680789558.877239-CDS-P-littoralis_Contig1263:1774..2179Pylaiella littoralis U1_48CDSP-littoralis_Contig1263 1775..2179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1263.2.1prot_P-littoralis_Contig1263.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1263 1775..2179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1263.2.1

>prot_P-littoralis_Contig1263.2.1 ID=prot_P-littoralis_Contig1263.2.1|Name=mRNA_P-littoralis_Contig1263.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MIAELLKGSNNGVLGHGDLKRVAAMYQQTPKTVSKYWKMYNQKKEAGEED
PDLHNKRKGNSGQKGIDIAALKVVLQEIPLKNRTTIRSIAAALEIPTSTL
FDNLKNLGLRSCLRFLKPLLSDDGKAQRLAWALR*
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mRNA from alignment at P-littoralis_Contig1263:1009..2212-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1263.2.1 ID=mRNA_P-littoralis_Contig1263.2.1|Name=mRNA_P-littoralis_Contig1263.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1204bp|location=Sequence derived from alignment at P-littoralis_Contig1263:1009..2212- (Pylaiella littoralis U1_48)
CGCAAGAATTTGACACCTCCGGAGAAAAGAGGCATGATTGCCGAGCTGCT CAAGGGCAGCAACAACGGGGTTTTGGGCCATGGTGACCTGAAGAGGGTGG CGGCGATGTACCAACAGACGCCCAAGACGGTGAGCAAGTACTGGAAGATG TACAACCAGAAGAAAGAAGCCGGGGAAGAAGATCCCGACCTTCACAACAA ACGTAAGGGCAACAGCGGCCAGAAGGGGATCGATATCGCCGCTCTGAAGG TGGTGTTGCAAGAGATCCCCTTGAAGAACCGCACCACGATAAGATCGATT GCAGCCGCTTTGGAAATTCCGACGTCAACTCTGTTCGACAACCTCAAGAA CCTAGGCCTGCGATCGTGCTTGAGGTTCCTCAAGCCGCTTCTTTCCGATG ATGGGAAGGCGCAACGGTTGGCATGGGCGTTGAGGTAGGTTCGGTTCAGC CCCGGTGGTGCACGCAAGTTCCACAACTTCTTCGACTTCGTTCACTTGGA CGAGAAGTGGTTCTACATCTGCAAGCAGGGTCAGCGATACTACTGCTACG AGGGCGAGGACCTGCCCGTCCGGAAGGTCCAGCACAAGAGCCACGTGATC AAGGTCATGTTCCTCGCAGCAGTAGCGCGGCCGCGCTACGACTCTGGCCG CAACCGCCAGTTCGACGGCAAAATCGGCATCTACCCCTTCACGGTGCAGC GTGCGGCGCAGCGCAACAGCAGGAACAGGGCAGCGGGGACGATGGTGACG CACAGTGTGGAGGTCAACCGCGCAACGTACAATGAGAAGCTGATCAACAA CGTCTTCCCGGACATCAGGGCTAAGTTCCCGGCCTCGCCCATCATCTTCG CGCAGCAGGACAACGCTCCGGGCCACCGTGTGCTGGCAGACCCTGACGTG GTGGCGGCGGCCGGGCAGGGGAGGGCGCAGGATAGAGCTCGTCAACCAGC CTCCCAACAGCCCGGACTGCAACATTCTCGACCTGGGGTTCTTCAACTCC ATCCAGTCTCTACAAGACCGCACCACCCCCACCACGGTTGACGAGCTTGT GACCGAAGTGGAGAGAGCCTGTTGGGCGCAGAAGCCGGAAACCCTCGGCC GTGTCTGGACAACACTGCAGAGCGTCCTTCAAGAGATCATGCTGGCGCGA GGAGACAACACGTTCAAGCTGCCCCACCTGCGCAAACAAACGGCAGCACG CGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1263:1009..2212-

>mRNA_P-littoralis_Contig1263.2.1 ID=mRNA_P-littoralis_Contig1263.2.1|Name=mRNA_P-littoralis_Contig1263.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig1263:1009..2212- (Pylaiella littoralis U1_48)
ATGATTGCCGAGCTGCTCAAGGGCAGCAACAACGGGGTTTTGGGCCATGG
TGACCTGAAGAGGGTGGCGGCGATGTACCAACAGACGCCCAAGACGGTGA
GCAAGTACTGGAAGATGTACAACCAGAAGAAAGAAGCCGGGGAAGAAGAT
CCCGACCTTCACAACAAACGTAAGGGCAACAGCGGCCAGAAGGGGATCGA
TATCGCCGCTCTGAAGGTGGTGTTGCAAGAGATCCCCTTGAAGAACCGCA
CCACGATAAGATCGATTGCAGCCGCTTTGGAAATTCCGACGTCAACTCTG
TTCGACAACCTCAAGAACCTAGGCCTGCGATCGTGCTTGAGGTTCCTCAA
GCCGCTTCTTTCCGATGATGGGAAGGCGCAACGGTTGGCATGGGCGTTGA
GGTAG
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