mRNA_P-littoralis_Contig1260.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1260.6.1
Unique NamemRNA_P-littoralis_Contig1260.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1260.6.1 vs. uniprot
Match: A0A6H5LCV9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCV9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.500e-13
Identity = 148/480 (30.83%), Postives = 167/480 (34.79%), Query Frame = 2 
Query:  509 EEMIDTSNSSSDFTGPQRVRVGNSNTAASSISLSFWSLPASTPDSNTSRSRLGSQTMSRARPGQRQQRTGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSTIHESADSAPAVDKLKRARTNAEPATTRTTAVTGMMAASDARLEESRQKWSRSNGGGSRIPDEIFTEDGASDSSXXXXXXXXXXXXXXXXXXXXXXXGPSKSXXXXXXXAANPRSSPC-PFGTDISHILSWKPAPRPNATPTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLAAMDASXXXXXXXXXXXXXXXXXXSQR---AGFVTGEEPKVGAXXXXXXXXXXRTG------KRAAPTRSATAPTATRPRISASLEALRVRVVKKAD----------------GXXXXXXXXXXSFDDVDLKLEAYDAEMRRRSADAAAAPR 1870
            EE+ D SNSS DFTGPQRVR+ NSN+  + ISLSFWSLPASTPDS +   RL S+T+           T  TA                                                  +   + +    KRAR    P    TT  T   AA+ A       KWS               +  A+                            +K+        A   S P  PFGTDISHILSWKPAPR NA  +                                                                 P AA   S                    R   AG V GEE  VGA                    R  PT   TA  + RP IS SLEALRVRVVKK                   XXXXXXXXXXSF+ VDLKLEAYDAE+RRRSADAA APR
Sbjct:   98 EEIADVSNSSGDFTGPQRVRI-NSNSVPADISLSFWSLPASTPDSKSGGGRLTSKTV-----------TKGTA--------------------------------------------------AGGKSASASTRKRARGGGTPQAVETTVTT---AATRAEARHQASKWSSGATAXXXXXXXXXXDPSAA----------------------------AKTDRAAAAATAKVDSVPSNPFGTDISHILSWKPAPRQNAAGSDGTGGSPTTGSASTNTTPEAGSKQEQHSSTGGPSTQQ----------------------------PTAAATGSFGRSSASSSFMTVASSGDGSRGRTAGGV-GEEAGVGAAGRPRTRAPPLKSFAKWPPARTTPTEMGTATVSARPAIS-SLEALRVRVVKKVGEKSDDXXXXXXXXXXXXXXXXXXXXXXSFE-VDLKLEAYDAEVRRRSADAAVAPR 453
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BLAST of mRNA_P-littoralis_Contig1260.6.1 vs. uniprot
Match: D7G1H4_ECTSI (Possibly a dual-specificity PK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H4_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 3.610e-5
Identity = 58/93 (62.37%), Postives = 62/93 (66.67%), Query Frame = 2 
Query: 1640 RTGKRAAPTRSATAPTATRPRISASLEALRVRVVKKA-----DGXXXXXXXXXX-----------SFDDVDLKLEAYDAEMRRRSADAAAAPR 1870
            R   RA P +S TA  + RP IS SLEALRVRVVKK      DG  XXXXXXXX           SF+ VDLKLEAYDAE+RRRSADAAAAPR
Sbjct:   30 RPSTRAPPVKSGTATASARPAIS-SLEALRVRVVKKVGEKSDDGGDXXXXXXXXXXXXXXXXXGDSFE-VDLKLEAYDAEVRRRSADAAAAPR 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1260.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LCV9_9PHAE4.500e-1330.83Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G1H4_ECTSI3.610e-562.37Possibly a dual-specificity PK n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1260contigP-littoralis_Contig1260:14426..18280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2294
Hectar predicted targeting categoryother localisation
Exons3
Cds size2127
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789558.2529807-UTR-P-littoralis_Contig1260:14425..145911680789558.2529807-UTR-P-littoralis_Contig1260:14425..14591Pylaiella littoralis U1_48UTRP-littoralis_Contig1260 14426..14591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789558.2651055-CDS-P-littoralis_Contig1260:14591..160971680789558.2651055-CDS-P-littoralis_Contig1260:14591..16097Pylaiella littoralis U1_48CDSP-littoralis_Contig1260 14592..16097 +
1680789558.274213-CDS-P-littoralis_Contig1260:16667..168111680789558.274213-CDS-P-littoralis_Contig1260:16667..16811Pylaiella littoralis U1_48CDSP-littoralis_Contig1260 16668..16811 +
1680789558.2851233-CDS-P-littoralis_Contig1260:17803..182801680789558.2851233-CDS-P-littoralis_Contig1260:17803..18280Pylaiella littoralis U1_48CDSP-littoralis_Contig1260 17804..18280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1260.6.1prot_P-littoralis_Contig1260.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1260 14592..18280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1260.6.1

>prot_P-littoralis_Contig1260.6.1 ID=prot_P-littoralis_Contig1260.6.1|Name=mRNA_P-littoralis_Contig1260.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=709bp
MDNNSNSSFGMSSSVAGKENARGNPTRPYTTAKKLGETQQRQQQQQQQTS
VAVPKTPKPRVDGTIGAAASTRVRRSGLSLREDGNGGAPSSSLRARAATA
ATALCSSSSKSKGEEEMIDTSNSSSDFTGPQRVRVGNSNTAASSISLSFW
SLPASTPDSNTSRSRLGSQTMSRARPGQRQQRTGATAAAGAGAASTPSHN
NHHRPSGAASREPLTIVRAGGGSSSSSSSSRKSTIHESADSAPAVDKLKR
ARTNAEPATTRTTAVTGMMAASDARLEESRQKWSRSNGGGSRIPDEIFTE
DGASDSSGAATASSTEPPLPTAAAAAAAVVGPSKSPAAATSSAANPRSSP
CPFGTDISHILSWKPAPRPNATPTSSAAAAASFNRVVSTGEEEDARGGSG
SAAALSRQEHQRHQPQEQRSSSSSSSISGNAAAMKSNQKPLAAMDASVGA
SSASSAVSSGDDPPRSQRAGFVTGEEPKVGAAAAAAAAAAARTGKRAAPT
RSATAPTATRPRISASLEALRVRVVKKADGDDDDDDDDDDSFDDVDLKLE
AYDAEMRRRSADAAAAPRAAALGAAARRTPVTPVTAGAAAALPSSSRLGA
PTAAAAGGTIAMSGAGAPSKGGVSGGVGSASSSSSPSAREGFAKKAPVAA
AEEVGVPSTAYQLRKNSSSSSGSSGSGNKGENGSSEARWDGGGRPLWSGA
GVSSGRSGG
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mRNA from alignment at P-littoralis_Contig1260:14426..18280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1260.6.1 ID=mRNA_P-littoralis_Contig1260.6.1|Name=mRNA_P-littoralis_Contig1260.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3855bp|location=Sequence derived from alignment at P-littoralis_Contig1260:14426..18280+ (Pylaiella littoralis U1_48)
GCAGCAGCAGCAGCTGTAGGGTAGTCCTGTATTTCTACGTAAAAGCAGTA
CAGCAGTAGCTTCGAAGAAGACCGCTGTGGGCAGCTATATATAATACCCT
GGGGTTCACTCAGGAGAAGCCCACAGGCGCTCGAATTCAGGAGCTCAAGG
GCGTTGTAGGAGCAGCATGGATAACAACAGCAACAGCAGCTTTGGTATGT
CCTCGTCGGTGGCGGGAAAAGAAAATGCCAGGGGTAACCCAACCAGGCCC
TATACAACAGCGAAGAAATTGGGGGAAACACAACAGCGACAGCAGCAGCA
GCAGCAGCAGACATCGGTAGCCGTCCCCAAGACCCCGAAACCGCGAGTAG
ATGGGACAATTGGGGCAGCTGCGTCCACCCGTGTGCGAAGGTCAGGTTTA
TCCTTGCGCGAGGATGGAAACGGCGGCGCCCCTTCCTCCTCTTTGAGGGC
CAGAGCAGCAACAGCAGCGACAGCGCTTTGCAGCAGTAGCAGCAAATCCA
AAGGGGAGGAGGAGATGATAGATACCAGCAATAGCAGCAGCGACTTCACA
GGTCCTCAGCGCGTTCGTGTTGGAAACAGCAACACGGCTGCCTCGAGCAT
CTCCCTGTCGTTCTGGTCTCTCCCGGCATCCACTCCAGACAGCAATACTA
GCAGGAGCAGGCTCGGATCGCAAACCATGTCCAGAGCACGCCCCGGGCAG
CGGCAGCAGCGCACAGGAGCAACAGCAGCAGCAGGAGCAGGAGCAGCAAG
CACGCCCTCGCACAACAACCACCACCGACCTTCAGGGGCGGCATCGCGCG
AGCCTTTGACCATCGTCAGGGCCGGCGGCGGCAGCAGCAGCAGCAGCAGC
AGCAGCAGGAAGAGCACGATACATGAATCGGCGGATTCAGCGCCCGCTGT
CGACAAGCTCAAGCGCGCTCGCACCAACGCGGAACCAGCAACGACAAGGA
CAACAGCTGTAACGGGTATGATGGCCGCATCAGATGCACGTCTAGAAGAG
TCACGACAAAAGTGGAGCAGGTCTAATGGCGGTGGCAGCAGAATCCCTGA
CGAAATCTTTACAGAGGACGGGGCATCCGACTCATCGGGTGCTGCCACCG
CAAGCTCAACAGAACCACCACTACCGACAGCAGCAGCAGCAGCAGCAGCC
GTAGTCGGCCCAAGCAAGAGTCCTGCTGCTGCTACTTCTTCTGCTGCCAA
CCCACGGTCTTCGCCTTGTCCTTTCGGGACAGACATTTCTCACATCCTCA
GCTGGAAGCCCGCGCCCAGGCCAAACGCTACTCCCACTAGCAGCGCTGCT
GCGGCTGCGAGCTTCAACCGAGTCGTCTCCACCGGTGAGGAGGAAGACGC
ACGTGGTGGGAGTGGCTCGGCGGCGGCACTCTCTAGGCAGGAGCACCAGC
GACATCAGCCGCAGGAGCAGCGAAGCAGCAGCAGCAGCAGCAGCATCAGC
GGCAACGCTGCGGCCATGAAAAGCAACCAGAAGCCGCTTGCAGCGATGGA
CGCCTCGGTTGGGGCTTCTTCAGCATCTTCTGCTGTTTCAAGTGGCGACG
ATCCGCCGCGGAGTCAAAGGGCGGGCTTTGTAACCGGCGAGGAACCCAAA
GTCGGAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGGACCGGGAA
GCGGGCGGCTCCAACACGCTCGGTAAGAAACAACCACAACTACGCCATGT
GTACAGTATGGGCAGCCAAGCACGAAGCACTTCAAATAGCCATCCTTGTT
TTGACCGAAATGGGTTGTCCTGTTGTGCCGTGCTGGTGCGTTGAGGAGAG
TCAATCCGCACAGGGGATGGATCGATAGCGTTGTGTATTTGTTGAAGTTG
AAGTTATCAGCGCTGTCGTCAAAACGTGCACTACTGGAGATAGCGGTAGC
ATCGGAGGGAAAAAATCTACTGCTGTTGTACGCTTGGTTGAGAAATGCGG
CGAAACGTCTGTCTGTGTGTAAATGATGCTGTGCAAGACATAAAGTTTGT
GAGAACAAACGATCCGCCCTTCCCATTGGATTCTCCTCGTCGTGGTAGAT
CCTTGGTCGATATCTTGCGCAAATGATCGTAGTAATGCAAGCTTCCTTGT
CTTATTTGTTTGTCTCCTGGGTGTTTCTGATTCAGGTAACGGCCGCCGCT
GTTGATGTCGATTGCTGACCTCTTCTTCTGCACGGGTGTTTTTTTTTATA
CTTAATGCAACTTGTCCATCTTCTGTACCTGATTTGATTCAGGCAACGGC
CCCGACCGCTACACGGCCGAGGATATCCGCATCCCTGGAAGCTCTAAGGG
TGAGAGTCGTTAAGAAAGCCGATGGTGACGACGACGACGACGATGACGAC
GATGACAGCTTCGACGACGTGGACTTGAAGCTAGAGGTACGCCGTGGGGG
GGGTTGTATAAACGTTTGCCTAAACCTACCATGCCTGCCGCAGGTCGCGT
AATATACCCCACGGGACCCCATCCACCGATTTTCAACGGTCGGCGTCTGC
TGTGCTCCACAGCAGCAAGAGTGTGTGAAGTTGTTGGTGCCGGACCGAGA
AGGGCAAATGGTGTCGAAATCATGGAACCACGAAGTGTTGGTGCTGAATC
GAAAAGGGCAAGTGGCGTTGAAATCATGGAACAATGAAGTGTTGGTGCTG
GGTCGAACAGGGCAAGTGGCGTTGAAATCGTGGAACCATTATGTAGAAAG
AGCAACAGAGAGAGAGAAAGAGAGAGAGAGAGAGCTTTCCAAAAAGTTTA
AGAAGCATCGCTTGATGTTCGCGTGGGTACTGTCTTCGTTGTGGAGTAAT
CCAGCTGGGAAAAATCGGTCCGAAAGGTTGAGTGGTACCTCGCGCGGGCC
GACGATAGGCCGCCGTCGGCTTCGGGCGATCGGTTGGGCCCAAATGGCGG
AGCGAACGAAAACAGAACGGTATGTGATTCCGGCGGTAGTTCTCCATCCC
TATTTTGTACTTTCAAGTCGCGAAAAACCGTTCAGCGCAGCAGTACTGGT
AGGAAAAAGGACGACCGCCCACTTTTTTTTCTTCTTGAAACCGCCAACTT
TTTTTTGTCGTCCGACATTGCCACTGCTACTGCTGTGTGCAGCTAGGCTT
GGCTCAAATCAGACGCCCAGGCGTTCAACGAGCGGGGATGAAGGAGTCGA
CGATGCTGCCTGGCGAGTTAGGTGAAACGAGCGCTCGACGAGGGCGTTCT
TACCTCATCCCATCCTTGGTGCATACCTGGCATATATCATATGAATGTAT
GTATATGGCCATTGCCGCGGCTTGCGCGGTTTGACCCCCCCCGTCAACTT
CAATCCCACCCATCCTCCGTTCCGCCCCGTCAACGTTATTTCCCAACCAA
AATGACTGTATGTTTATCATTTTTCTAGGCGTACGATGCGGAGATGCGGA
GGCGTAGCGCGGACGCGGCTGCTGCGCCCCGGGCGGCCGCGCTTGGAGCG
GCGGCGCGTCGGACACCTGTGACACCCGTGACAGCAGGAGCAGCAGCAGC
GCTGCCGTCTTCTTCACGCCTTGGTGCACCAACCGCCGCTGCAGCGGGGG
GTACCATCGCGATGTCAGGAGCAGGCGCACCTTCGAAGGGTGGCGTTAGC
GGTGGCGTAGGCTCCGCGTCTTCTTCTTCTTCTCCTTCCGCAAGGGAGGG
GTTTGCCAAGAAGGCGCCGGTGGCAGCAGCAGAGGAGGTCGGCGTGCCCT
CGACAGCTTATCAGCTCCGCAAGAACAGCAGCAGCAGCAGCGGCAGCAGT
GGCAGTGGCAACAAGGGCGAGAACGGCTCCTCAGAGGCGCGTTGGGATGG
CGGCGGCCGTCCTCTGTGGAGTGGGGCGGGGGTGAGTTCCGGAAGAAGTG
GAGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1260:14426..18280+

>mRNA_P-littoralis_Contig1260.6.1 ID=mRNA_P-littoralis_Contig1260.6.1|Name=mRNA_P-littoralis_Contig1260.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2127bp|location=Sequence derived from alignment at P-littoralis_Contig1260:14426..18280+ (Pylaiella littoralis U1_48)
ATGGATAACAACAGCAACAGCAGCTTTGGTATGTCCTCGTCGGTGGCGGG
AAAAGAAAATGCCAGGGGTAACCCAACCAGGCCCTATACAACAGCGAAGA
AATTGGGGGAAACACAACAGCGACAGCAGCAGCAGCAGCAGCAGACATCG
GTAGCCGTCCCCAAGACCCCGAAACCGCGAGTAGATGGGACAATTGGGGC
AGCTGCGTCCACCCGTGTGCGAAGGTCAGGTTTATCCTTGCGCGAGGATG
GAAACGGCGGCGCCCCTTCCTCCTCTTTGAGGGCCAGAGCAGCAACAGCA
GCGACAGCGCTTTGCAGCAGTAGCAGCAAATCCAAAGGGGAGGAGGAGAT
GATAGATACCAGCAATAGCAGCAGCGACTTCACAGGTCCTCAGCGCGTTC
GTGTTGGAAACAGCAACACGGCTGCCTCGAGCATCTCCCTGTCGTTCTGG
TCTCTCCCGGCATCCACTCCAGACAGCAATACTAGCAGGAGCAGGCTCGG
ATCGCAAACCATGTCCAGAGCACGCCCCGGGCAGCGGCAGCAGCGCACAG
GAGCAACAGCAGCAGCAGGAGCAGGAGCAGCAAGCACGCCCTCGCACAAC
AACCACCACCGACCTTCAGGGGCGGCATCGCGCGAGCCTTTGACCATCGT
CAGGGCCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGAGCA
CGATACATGAATCGGCGGATTCAGCGCCCGCTGTCGACAAGCTCAAGCGC
GCTCGCACCAACGCGGAACCAGCAACGACAAGGACAACAGCTGTAACGGG
TATGATGGCCGCATCAGATGCACGTCTAGAAGAGTCACGACAAAAGTGGA
GCAGGTCTAATGGCGGTGGCAGCAGAATCCCTGACGAAATCTTTACAGAG
GACGGGGCATCCGACTCATCGGGTGCTGCCACCGCAAGCTCAACAGAACC
ACCACTACCGACAGCAGCAGCAGCAGCAGCAGCCGTAGTCGGCCCAAGCA
AGAGTCCTGCTGCTGCTACTTCTTCTGCTGCCAACCCACGGTCTTCGCCT
TGTCCTTTCGGGACAGACATTTCTCACATCCTCAGCTGGAAGCCCGCGCC
CAGGCCAAACGCTACTCCCACTAGCAGCGCTGCTGCGGCTGCGAGCTTCA
ACCGAGTCGTCTCCACCGGTGAGGAGGAAGACGCACGTGGTGGGAGTGGC
TCGGCGGCGGCACTCTCTAGGCAGGAGCACCAGCGACATCAGCCGCAGGA
GCAGCGAAGCAGCAGCAGCAGCAGCAGCATCAGCGGCAACGCTGCGGCCA
TGAAAAGCAACCAGAAGCCGCTTGCAGCGATGGACGCCTCGGTTGGGGCT
TCTTCAGCATCTTCTGCTGTTTCAAGTGGCGACGATCCGCCGCGGAGTCA
AAGGGCGGGCTTTGTAACCGGCGAGGAACCCAAAGTCGGAGCGGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCCAGGACCGGGAAGCGGGCGGCTCCAACA
CGCTCGGCAACGGCCCCGACCGCTACACGGCCGAGGATATCCGCATCCCT
GGAAGCTCTAAGGGTGAGAGTCGTTAAGAAAGCCGATGGTGACGACGACG
ACGACGATGACGACGATGACAGCTTCGACGACGTGGACTTGAAGCTAGAG
GCGTACGATGCGGAGATGCGGAGGCGTAGCGCGGACGCGGCTGCTGCGCC
CCGGGCGGCCGCGCTTGGAGCGGCGGCGCGTCGGACACCTGTGACACCCG
TGACAGCAGGAGCAGCAGCAGCGCTGCCGTCTTCTTCACGCCTTGGTGCA
CCAACCGCCGCTGCAGCGGGGGGTACCATCGCGATGTCAGGAGCAGGCGC
ACCTTCGAAGGGTGGCGTTAGCGGTGGCGTAGGCTCCGCGTCTTCTTCTT
CTTCTCCTTCCGCAAGGGAGGGGTTTGCCAAGAAGGCGCCGGTGGCAGCA
GCAGAGGAGGTCGGCGTGCCCTCGACAGCTTATCAGCTCCGCAAGAACAG
CAGCAGCAGCAGCGGCAGCAGTGGCAGTGGCAACAAGGGCGAGAACGGCT
CCTCAGAGGCGCGTTGGGATGGCGGCGGCCGTCCTCTGTGGAGTGGGGCG
GGGGTGAGTTCCGGAAGAAGTGGAGGA
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