mRNA_P-littoralis_Contig126.98.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE) HSP 1 Score: 336 bits (862), Expect = 4.470e-105 Identity = 201/486 (41.36%), Postives = 256/486 (52.67%), Query Frame = 2
Query: 38 MKTSTTVSALLGLLSAPAMTMGDRTTPQQIELAEGDVNFKITYFGDGRTTPYRMYFWEKSLTGSSFRFDEDGDVVYFKAGSKVYRDRKEMKDGSVAFMSKPEMKHKGHSKADDSPMDDKVFANFDCDQCTAALSTVCESGLPAFCDKLDPQCLHRDGYSSVSILCNNFRRACTTWAVDCEDVCTEELE-------------------------------PSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDD-------------EEPSMCSN-GIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDD------------------EEPSMCSN-GIKGVESSNGEACCVAECGICGGEGCGTIGGHAGLGGDDCCATEIVDDGEACSVSKKAPCFI 1303
M++ T VSALLGLL + TM QQI++ EG FKI++F DGR TPYR+YFW+ LTGSS+RF DGDV YFKAG + Y+DR++ +DGS+ F S P K +K++ P D + + C CTA L VC SGLP FC +D CL RDG SV ILC + RAC + C D P+ S+G+ G+ESSN + CC CG CGG GC G GLG CC + I DDGE+C+ T APC+I D +DD E + C++ G+ G+ESSN +ACC CG CGG GC G GLG +CC+ +I GE+C+ T APC+I D D S D E +MC++ G+ G+ESSN +ACC CG CGG GC G GL CC+ EIVDDGE+CS + APCFI
Sbjct: 1 MRSFTIVSALLGLLVPGSATMAKTAKQQQIQIPEGGHTFKISHFDDGRATPYRVYFWDTFLTGSSYRFTLDGDVRYFKAGREQYKDREDKEDGSIKFTSTPSEPRKDLNKSEPKPTDFPTYRS--CSDCTATLQVVCRSGLPKFCSTVDRSCLGRDGALSVGILCGKYERACASANSVCSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPTCASHGVVGIESSNKKVCCDVRCGTCGGVGCSKFGEEYGLGESYCCTSTITDDGESCADTGMAPCYI---DSDDDXXXXXXXXXXXXXXXXXGEGSTTCASYGVVGIESSNQKACCDVRCGACGGVGCSKFGEAYGLGAYECCSNDIVKQGESCAATGMAPCYIDSDDEWDYESKDXXXXXXXXXXXXXXXXXSGEGTAMCASYGVVGIESSNQKACCDVRCGTCGGVGCSKFGEAYGLDASYCCSNEIVDDGESCSATGMAPCFI 481
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI) HSP 1 Score: 321 bits (823), Expect = 4.770e-98 Identity = 195/469 (41.58%), Postives = 247/469 (52.67%), Query Frame = 2
Query: 38 MKTSTTVSALLGLLSAPAMTMGDRTTPQQIELAEGDVNFKITYFGDGRTTPYRMYFWEKSLTGSSFRFDEDGDVVYFKAGSKVYRDRKEMKDGSVAFMSKPEMKHKGHSKADDSPMDDKVFANFDCDQCTAALSTVCESGLPAFCDKLDPQCLHRDGYSSVS------ILCNNFRRACTTWAVDCEDVCTEELEPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDD-------------------------EEPSMC-SNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDDE--------------EPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGGHAGLGGDDCCATEIVDDGEACSVSKKAPCFID 1306
MK+S VSALLGLL + TM + QQIE+ EG FKI++F DGR TPYR+YFW+ LTGSS+RF DGDV YFKAG + Y+DR++ +DGS+ F S P K +K + P D F + C CT L VC SGLP FC +D CL DG S S + S+G+ G+ESSN + CC CG CGG GC G GLG CCA+ I DDGE+C+VT APCFI D +DD E + C S+G+ G+ESSN + CC CG CGG GC G GLG CCA+ I DDGE+C+VT APCFI D +++SS + S+G+ G+ESSN +ACC CG CGG GC G GLG +CC+ +IV +GE+C+ + APC+ID
Sbjct: 1 MKSSMIVSALLGLLVPGSATMAETAKQQQIEIPEGGYTFKISHFDDGRATPYRVYFWDTFLTGSSYRFTLDGDVRYFKAGREQYKDREDKEDGSIKFTSTPSEPRKDLNKLEPKPTD---FPTYSCSDCTTTLQAVCHSGLPKFCSTIDRSCLGSDGTLSESSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCASHGVVGIESSNKKVCCDLRCGTCGGVGCSKFGEAYGLGESSCCASTITDDGESCAVTGMAPCFI---DSDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGTATCASHGVVGIESSNKKVCCDLRCGTCGGVGCSKFGEAYGLGESSCCASTITDDGESCAVTGMAPCFI---DSDNESSXXXXXXXXXXXXXXXXXGSATCASHGVVGIESSNQKACCDVRCGACGGVGCSKFGEAYGLGAYECCSNDIVREGESCAATGMAPCYID 460
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 216 bits (550), Expect = 1.610e-56 Identity = 119/234 (50.85%), Postives = 149/234 (63.68%), Query Frame = 2
Query: 608 MCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDDEEPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDDEEPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGGHAGLGGDDCCATEIVDDGEACSVSKKAPCFIDE 1309
+CSNGI G+++ N ACC+AECG CGG GC G GLG D+CC +EI D GE CSVTMEAPC + + +CSNGI G+++ N ACC+AECG CGG GC G GLG D+CC +EI D GE CSVTMEAPC + + +CSNGI G+++ N ACC+AECG CGG GC +GG GLG D+CC +EI D GE CSV+ +APC +D+
Sbjct: 2691 VCSNGIPGIQTGN--ACCLAECGTCGGRGCAEYGG--GLGEDNCCQSEIEDFGELCSVTMEAPCVVDD---------------VCSNGIPGIQTGN--ACCLAECGTCGGRGCAEYGG--GLGEDNCCQSEIEDFGELCSVTMEAPCVVDD---------------VCSNGIPGIQTGN--ACCLAECGGCGGTGCAQLGG--GLGADNCCMSEIEDFGELCSVTMEAPCVVDD 2882
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 191 bits (484), Expect = 5.760e-48 Identity = 110/260 (42.31%), Postives = 146/260 (56.15%), Query Frame = 2
Query: 599 EPS-MCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDDEEP-----------------------SMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDDEEPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGGHAGLGGDDCCATEIVDDGEACSVSKKAPCFID 1306
EP+ +CSNGI G++S N ACC+AECG CGG C G GLG ++CC ++I D GE CS+ +EAPC++ EP E CSNG+ G++S N ACC+AECG CGG C G GLG D+CC ++I + GE CS+ +EAPC++ + +CS+GI G+ S N ACC+AECG CGG GC GG GLG D+CC I + GE CS++ +APC +D
Sbjct: 640 EPTDLCSNGIPGIQSGN--ACCLAECGGCGGSDCDQFGD--GLGAENCCESDIVDYGELCSIALEAPCYLDEPTPEPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTDTCSNGMPGIQSGN--ACCLAECGACGGSDCDAFGG--GLGADNCCESDIVEHGELCSIALEAPCYLDD---------------VCSDGIPGIRSGN--ACCLAECGACGGSGCDEFGG--GLGADNCCEGNIEEHGELCSITLEAPCVVD 872
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 138 bits (347), Expect = 2.460e-34 Identity = 85/196 (43.37%), Postives = 114/196 (58.16%), Query Frame = 2
Query: 773 CSVTMEAPCFIG----EPDVEDDSSSDDEEPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDDEEP--------SMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGGHAGLGGDDCCATEIVDDGEACSVSKKAPCFIDEFESED 1324
C + APC +G V + + E +CSNGI GV+S G +CC+AECG CGG GC +G GLG +CC EI + GE CS+ +EAPC + D + S EP +CSNG G++S G +CC+AECG CGG GCG GG GLG D CC ++I + GE CS++ APC+ID+ ++D
Sbjct: 2 CDIFGSAPCVLGYAPAPTPVAEPVAPVTEPTDVCSNGIPGVQS--GVSCCLAECGGCGGSGCAELGG--GLGEHNCCEGEIEEFGELCSIKLEAPCVV---DASAPAPSPVAEPVAPVTEPTDVCSNGFPGIQS--GVSCCLAECGECGGRGCGEFGG--GLGADKCCESDIEEYGELCSIALAAPCYIDDGAADD 186
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 145 bits (366), Expect = 1.040e-33 Identity = 108/255 (42.35%), Postives = 138/255 (54.12%), Query Frame = 2
Query: 587 TEELEPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGG-DDCCATEIADD--GEACSVTMEAPC----FIGEP-DVEDDSSSDDEEPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGG-DDCCATEIADDGEACSVTMEAPCFIG----EPDVEDDSSSDDEEPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGGHAGLGGDDCCATEIVDDGEACSVSKKAPCFIDEF 1312
++ + PS CSNGI GV S+G+ CC+ CG CGGEGCG I AG G DCC I ++ G C EAPC F P + D ++ PS CSNGI G + +G CC+ CG CGG+GCGTI G GG D+CC + I G C EAPC I P V ++ S CSNGI G + +G ACC A CG CGG GCG++ G AG CC++++ G CS + +PC ID +
Sbjct: 284 SDPVAPSTCSNGIPGV--SDGDVCCLEACGQCGGEGCGAI---AGTNGASDCCPDTIKEESGGVFCG---EAPCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQ--DGAICCLEICGRCGGDGCGTI---PGTGGSDNCCPSTILAAGVVCG---EAPCIIEGYTPAPAVVGGGTTAPYGTSTCSNGILGYQ--DGPACCAANCGQCGGGGCGSVPGTAGA--SACCSSDVELAGNLCSATGVSPCVIDNY 518
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.690e-33 Identity = 98/264 (37.12%), Postives = 129/264 (48.86%), Query Frame = 2
Query: 50 TTVSALLGLLSAPAMTMGDRTTPQQIELAEGDVNFKITYFGDGRTTPYRMYFWEKSLTGSSFRFDEDGDVVYFKAGSKVYRDRKEMKDGSVAFMSKPEMKHKGHSKADDSPMDDKVF----ANFDCDQCTAALSTVCESGLPAFCDKLDPQCLHRDGYSSVSILCNNFRRACTTWAVDCEDVCTE---ELEPSMCSNGIK----GVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDC---------CATEIADDGEACSV 781
TTV LLG LS+ A + ++IE+ G FK++ F DGRTTPYR++F ++ LTGSS+R DG V YFKAG+++Y DR D S+ F KP K H K P DD F ANF C +CT A++ C SGLP FC +D L DG S+ LC+N++ CT C +C + EL + I G + G+A G GCG G L D CA +I DG C +
Sbjct: 6 TTVGVLLGQLSSLATVA--QAAQKKIEIPAGGYTFKLSLFDDGRTTPYRVFFADEYLTGSSYRLSADGHVQYFKAGAELYFDRMVQDDNSITFSKKPSESRK-HGKGRPEPHDDYDFSSSEANF-CTECTEAITATCYSGLPEFCTMVDRSILGNDGLQSMRALCHNYKEVCTIVEDSCHYLCGDMDHELVNAATITAIAASATGFDERPGQAS--------GDHGCGKYGCLPVLATDGITDDVESRWSCAEDIVPDGGQCEI 257
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI) HSP 1 Score: 130 bits (326), Expect = 3.810e-31 Identity = 73/178 (41.01%), Postives = 104/178 (58.43%), Query Frame = 2
Query: 605 SMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDDEEPSMCSNGIKGVESSNGEACCVAECG-ICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDDEEPSMCSNGIKGVE 1135
++CSNG++G++S++ +ACCV ECG+CGG GC T + L DCCATEI + G C V+M APC I +DS +C NG GV+ + + CC CG CGGEGCG++ AG+ CC+ I + G CS T+ APC +G + ++ ++ CSNGI G+E
Sbjct: 28 AVCSNGLEGIQSTSLDACCVEECGLCGGVGC-TPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDS--------VCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSL---AGVDATQCCSNLIIESGAVCSDTVSAPCVVGAAEADNSTT--------CSNGIVGIE 185
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI) HSP 1 Score: 127 bits (319), Expect = 2.110e-29 Identity = 75/184 (40.76%), Postives = 97/184 (52.72%), Query Frame = 2
Query: 860 CSNGIKGVESSNGEACCVAECGICGGEGC-GTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVED----------------------------------DSSSDDEEPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGGHAGLGGDDCCATEIVDDGEACSVSKKAPCFID 1306
CSNG+ G+ESSNG+ACC CG CGG GC G G G DCC +EI ++GEAC+ T +PC+I +V D D S D++ C+NG+ G+ES+ GE CC A+CG CGG GCG G+DCC TEI+D G+ CS APC++D
Sbjct: 107 CSNGVYGIESSNGKACCALTCGSCGGVGCSGRPG-----GSYDCCESEIVEEGEACAATGASPCYIDGDEVLDPVVPSMSPVVPEETDMPSGFGGGSYSYSYDFVSWDGDSMDDQFMWCTNGVPGMESAGGEVCCPADCGQCGGVGCGEF-------GEDCCITEIMDYGQPCSEIGTAPCYLD 278
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 130 bits (326), Expect = 3.530e-29 Identity = 71/151 (47.02%), Postives = 84/151 (55.63%), Query Frame = 2
Query: 605 SMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIGEPDVEDDSSSDDEEPSMCSNGIKGVESSNGEACCVAECGICGGEGCGTIGAHAGLGGDDCCATEIADDGEACSVTMEAPCFIG 1057
+ CSNG++G++ NG CC CG CGG GC T GA AGL G CC I G+ C T +APC IG + S+ CSNG++G++ NG CC CG CGG GC T GA AGLG D CC I E C T EAPC IG
Sbjct: 268 NTCSNGLEGIDG-NGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTPSE-----TCSNGVEGIDG-NGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIG 411 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig126.98.1 >prot_P-littoralis_Contig126.98.1 ID=prot_P-littoralis_Contig126.98.1|Name=mRNA_P-littoralis_Contig126.98.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=470bp MKTSTTVSALLGLLSAPAMTMGDRTTPQQIELAEGDVNFKITYFGDGRTTback to top mRNA from alignment at P-littoralis_Contig126:456694..467769+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig126.98.1 ID=mRNA_P-littoralis_Contig126.98.1|Name=mRNA_P-littoralis_Contig126.98.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11076bp|location=Sequence derived from alignment at P-littoralis_Contig126:456694..467769+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig126:456694..467769+ >mRNA_P-littoralis_Contig126.98.1 ID=mRNA_P-littoralis_Contig126.98.1|Name=mRNA_P-littoralis_Contig126.98.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1410bp|location=Sequence derived from alignment at P-littoralis_Contig126:456694..467769+ (Pylaiella littoralis U1_48)back to top |