mRNA_P-littoralis_Contig126.97.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.97.1
Unique NamemRNA_P-littoralis_Contig126.97.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Match: A0A0R6M4Q0_UNDPI (30S ribosomal protein S14, chloroplastic n=31 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4Q0_UNDPI)

HSP 1 Score: 150 bits (380), Expect = 8.930e-46
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:    7 RERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 258
            RERLV+KY +KRKS LLEFK A+TFS QME+HKKIEK PRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHM+REM HNCLLPGVR
Sbjct:   13 RERLVIKYREKRKSLLLEFKKANTFSDQMEVHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMVREMGHNCLLPGVR 96
[Close]
BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Match: A0A1I9LVJ7_9PHAE (30S ribosomal protein S14, chloroplastic n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ7_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.460e-43
Identity = 72/84 (85.71%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:    7 RERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 258
            RE+LVLKYSQKR++ LLEFK A+TFS QM LHKKIEK PRNSSRIRLRNRCWRTGRSRGVY+DFGLCRHMIREMAHN +LPGVR
Sbjct:   13 REKLVLKYSQKRETLLLEFKKANTFSDQMGLHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYKDFGLCRHMIREMAHNGILPGVR 96
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BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Match: A0A2R4QPV6_9PHAE (30S ribosomal protein S14 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPV6_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 4.960e-43
Identity = 71/84 (84.52%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 RERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 258
            RE+LVLKY +KR   L EFKTAD F  QME+ KKIEK PRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR
Sbjct:   13 REKLVLKYREKRDFLLFEFKTADNFLQQMEIRKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 96
[Close]
BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Match: A0A8F0FAM9_9PHAE (Ribosomal protein S14 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAM9_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.080e-42
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    7 RERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 258
            RE+LV KYS+KRK+ L++FK A+ F  QME+HKKIEK PRNS++IRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNC+LPGVR
Sbjct:   13 REKLVEKYSEKRKALLIDFKKANNFVDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVR 96
[Close]
BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Match: A0A8F0F7A7_9PHAE (Ribosomal protein S14 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A7_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 6.770e-41
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    7 RERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 258
            R + V KYS++R+  LLEFK ADTFS QME+HKKIE+ PRNSS IRLRNRCWRTGRSRG+YRDFGLCRHMIREMAH+C+LPGVR
Sbjct:   13 RTKSVKKYSERRRLLLLEFKKADTFSKQMEIHKKIEQLPRNSSMIRLRNRCWRTGRSRGIYRDFGLCRHMIREMAHDCILPGVR 96
[Close]
BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Match: A0A8E5XRG5_9PHAE (30S ribosomal protein S14, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRG5_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 8.840e-37
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:    7 RERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 258
            R RLV KY +KR+S L EFK A+TFS QME H+KIE+ P+NSS+IRLRNRCWRTGRSRGVYRDFGLCRHMIREM H   LPG+R
Sbjct:   13 RIRLVSKYHEKRRSLLDEFKRANTFSIQMETHRKIERLPKNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMGHTGTLPGIR 96
[Close]
BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Match: A0A1L2F1U9_9PHAE (Ribosomal protein S14 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1U9_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.260e-36
Identity = 58/84 (69.05%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 RERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 258
            RE+LV +Y +KR+  LLEFK  + F  QM+++++I+K PRNSS+IRL+NRCWRTGR+RGVYRDFGLCRHMIREMAHNC+LPGV+
Sbjct:   13 REKLVFRYIEKRQLLLLEFKKTNNFVEQMQINRRIQKLPRNSSKIRLKNRCWRTGRTRGVYRDFGLCRHMIREMAHNCILPGVK 96
[Close]
BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Match: A0A7S6U9W6_9STRA (30S ribosomal protein S14, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9W6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.530e-36
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    7 RERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 258
            R+ LV+KY +KRK+FL  F   + F  +M LHKKIEK PRNSSRIRLRNRCWRTGRSRG YRDFGLCRHMIREM HN LLPG+R
Sbjct:   13 RQHLVIKYKKKRKTFLALFNKENNFETKMLLHKKIEKLPRNSSRIRLRNRCWRTGRSRGTYRDFGLCRHMIREMGHNGLLPGLR 96
[Close]
BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Match: A0A8E5BHX8_9PHAE (Ribosomal protein S14 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BHX8_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.710e-34
Identity = 53/84 (63.10%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 RERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 258
            R+++++KYS +RK+ L++ K A+TF  Q+++HK IEK PRN++++R+RNRCW TGRSRGVYRDFGLCRHMIR MAHNC+LPG++
Sbjct:   13 RKKIIIKYSVRRKNLLIKLKKANTFLEQVQIHKIIEKLPRNTAQVRVRNRCWITGRSRGVYRDFGLCRHMIRNMAHNCILPGIK 96
[Close]
BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Match: A0A141BSF2_9PHAE (30S ribosomal protein S14, chloroplastic n=13 Tax=Sargassum TaxID=3015 RepID=A0A141BSF2_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.890e-34
Identity = 57/84 (67.86%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:    7 RERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR 258
            RE+LV +Y ++R+  LLE K    F  QM++++KI+K PRNSS+IRLRNRCWRTGR+RGVYRDFGLCRHMIREMA NC+LPGV+
Sbjct:   13 REKLVSRYMERRQFLLLELKKTTNFVQQMQINRKIQKLPRNSSKIRLRNRCWRTGRTRGVYRDFGLCRHMIREMALNCILPGVK 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R6M4Q0_UNDPI8.930e-4686.9030S ribosomal protein S14, chloroplastic n=31 Tax=... [more]
A0A1I9LVJ7_9PHAE2.460e-4385.7130S ribosomal protein S14, chloroplastic n=5 Tax=E... [more]
A0A2R4QPV6_9PHAE4.960e-4384.5230S ribosomal protein S14 n=3 Tax=Fucaceae TaxID=3... [more]
A0A8F0FAM9_9PHAE4.080e-4279.76Ribosomal protein S14 n=1 Tax=Desmarestia aculeata... [more]
A0A8F0F7A7_9PHAE6.770e-4178.57Ribosomal protein S14 n=1 Tax=Protohalopteris sp. ... [more]
A0A8E5XRG5_9PHAE8.840e-3775.0030S ribosomal protein S14, chloroplastic n=1 Tax=I... [more]
A0A1L2F1U9_9PHAE1.260e-3669.05Ribosomal protein S14 n=1 Tax=Coccophora langsdorf... [more]
A0A7S6U9W6_9STRA2.530e-3673.8130S ribosomal protein S14, chloroplastic n=1 Tax=S... [more]
A0A8E5BHX8_9PHAE1.710e-3463.10Ribosomal protein S14 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A141BSF2_9PHAE4.890e-3467.8630S ribosomal protein S14, chloroplastic n=13 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:453786..454043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D1J7A5
Preferred namerps14
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,Ribosomal_S14
Model size258
Max annot lvl2759|Eukaryota
KEGG koko:K02954,ko:K20101
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003735,GO:0003824,GO:0004004,GO:0004386,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006139,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue8.14e-44
EggNOG OGsCOG0199@1|root,KOG1741@2759|Eukaryota
EC3.6.4.13
Descriptionstructural constituent of ribosome
Cds size258
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789557.667204-CDS-P-littoralis_Contig126:453785..4540431680789557.667204-CDS-P-littoralis_Contig126:453785..454043Pylaiella littoralis U1_48CDSP-littoralis_Contig126 453786..454043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.97.1prot_P-littoralis_Contig126.97.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 453786..454043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.97.1

>prot_P-littoralis_Contig126.97.1 ID=prot_P-littoralis_Contig126.97.1|Name=mRNA_P-littoralis_Contig126.97.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MLRERLVLKYSQKRKSFLLEFKTADTFSAQMELHKKIEKQPRNSSRIRLR
NRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVR
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mRNA from alignment at P-littoralis_Contig126:453786..454043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.97.1 ID=mRNA_P-littoralis_Contig126.97.1|Name=mRNA_P-littoralis_Contig126.97.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig126:453786..454043+ (Pylaiella littoralis U1_48)
ATGCTAAGAGAAAGATTAGTCCTAAAATATAGTCAAAAACGTAAGTCTTT
TCTTTTAGAATTTAAAACGGCAGATACCTTTTCAGCTCAAATGGAACTTC
ATAAAAAAATAGAAAAACAACCTCGTAATAGCTCACGTATTCGACTACGA
AATCGATGCTGGAGAACTGGTCGTAGTCGAGGAGTTTATAGAGATTTTGG
CTTATGTCGTCATATGATTAGAGAAATGGCACATAATTGTTTATTACCGG
GTGTAAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:453786..454043+

>mRNA_P-littoralis_Contig126.97.1 ID=mRNA_P-littoralis_Contig126.97.1|Name=mRNA_P-littoralis_Contig126.97.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig126:453786..454043+ (Pylaiella littoralis U1_48)
ATGCTAAGAGAAAGATTAGTCCTAAAATATAGTCAAAAACGTAAGTCTTT
TCTTTTAGAATTTAAAACGGCAGATACCTTTTCAGCTCAAATGGAACTTC
ATAAAAAAATAGAAAAACAACCTCGTAATAGCTCACGTATTCGACTACGA
AATCGATGCTGGAGAACTGGTCGTAGTCGAGGAGTTTATAGAGATTTTGG
CTTATGTCGTCATATGATTAGAGAAATGGCACATAATTGTTTATTACCGG
GTGTAAGA
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