mRNA_P-littoralis_Contig126.80.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.80.1
Unique NamemRNA_P-littoralis_Contig126.80.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig126.80.1 vs. uniprot
Match: D8LDV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV1_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.970e-44
Identity = 91/165 (55.15%), Postives = 99/165 (60.00%), Query Frame = 1 
Query:    1 HYREQIIPTALELYASLPQDVLEGVDLEVGHTLPESMFVVTGTARPSWPRWGENLPSTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGCTEGRDGSGGGRA------FLQGPWVVFRVAREEYLEFYGGQAAVLDQAVGGSAAELEHMLM 477
            +YRE+IIPTALELYASL QDVLEGVDLEVGHTLPES+FVVTGTARPSWPRWG + PS  T                                               R+ SG GR       FL GPWVVFRVAR +YLEFY  QAAVLDQAVGGS AE+E+MLM
Sbjct:   45 NYREEIIPTALELYASLAQDVLEGVDLEVGHTLPESIFVVTGTARPSWPRWGGS-PSAATATPRLIEGGAGRGSNDVDGPDTTRNNGSGGTGFGRSP----------REASGRGRGMTRAREFLPGPWVVFRVARGDYLEFYRDQAAVLDQAVGGSVAEMENMLM 198
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BLAST of mRNA_P-littoralis_Contig126.80.1 vs. uniprot
Match: A0A6H5KV82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV82_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.590e-40
Identity = 86/159 (54.09%), Postives = 95/159 (59.75%), Query Frame = 1 
Query:    1 HYREQIIPTALELYASLPQDVLEGVDLEVGHTLPESMFVVTGTARPSWPRWGENLPSTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGCTEGRDGSGGGRAFLQGPWVVFRVAREEYLEFYGGQAAVLDQAVGGSAAELEHMLM 477
            +YRE+IIPTALELYASL QDVLEGVDLEVGHTLPES+FVVTGTARPSWPRWG +  +                                             GC   R      R FL GPWVVF VAR +YLEFY  QAAVLDQAVGGSA+E+E+MLM
Sbjct:  777 NYREEIIPTALELYASLAQDVLEGVDLEVGHTLPESIFVVTGTARPSWPRWGGSPSAATATPRLIEGGAGRGSNDVSDPNIRRSNGSGGTGFGRSPREASDRGCVMMR-----AREFLPGPWVVFHVARADYLEFYRDQAAVLDQAVGGSASEMENMLM 930
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDV1_ECTSI3.970e-4455.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV82_9PHAE2.590e-4054.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:326985..327599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size481
Hectar predicted targeting categoryother localisation
Exons2
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789556.5301535-CDS-P-littoralis_Contig126:326984..3272371680789556.5301535-CDS-P-littoralis_Contig126:326984..327237Pylaiella littoralis U1_48CDSP-littoralis_Contig126 326985..327237 +
1680789556.5486705-CDS-P-littoralis_Contig126:327372..3275991680789556.5486705-CDS-P-littoralis_Contig126:327372..327599Pylaiella littoralis U1_48CDSP-littoralis_Contig126 327373..327599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.80.1prot_P-littoralis_Contig126.80.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 326985..327599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.80.1

>prot_P-littoralis_Contig126.80.1 ID=prot_P-littoralis_Contig126.80.1|Name=mRNA_P-littoralis_Contig126.80.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
HYREQIIPTALELYASLPQDVLEGVDLEVGHTLPESMFVVTGTARPSWPR
WGENLPSTGTGTATSPTVVAGGEAGAGGTGNNSPGSRGGGAGMGGGGRGN
GMGCTEGRDGSGGGRAFLQGPWVVFRVAREEYLEFYGGQAAVLDQAVGGS
AAELEHMLM*
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mRNA from alignment at P-littoralis_Contig126:326985..327599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.80.1 ID=mRNA_P-littoralis_Contig126.80.1|Name=mRNA_P-littoralis_Contig126.80.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=615bp|location=Sequence derived from alignment at P-littoralis_Contig126:326985..327599+ (Pylaiella littoralis U1_48)
CACTACCGGGAACAAATCATCCCTACCGCCCTCGAGCTGTACGCCTCCCT
GCCGCAAGACGTGCTGGAAGGGGTGGACCTCGAGGTGGGGCACACGCTAC
CGGAGAGCATGTTCGTCGTCACCGGCACGGCGCGACCTTCCTGGCCTCGC
TGGGGGGAAAACCTCCCCTCGACGGGGACGGGGACGGCGACATCTCCGAC
GGTCGTAGCAGGGGGAGAAGCGGGAGCAGGAGGAACGGGAAATAATTCTC
CCGGTGGCTACAGCGGCGGCTACGGCGGCGGCTACCGTGGCGGCGGCGGG
GGCGGCAGCGGTGGTGGCACTGGTGGCGCGGGCTCCAGAGGGGGCCGGTT
CGTTGGAAGCGGTCCTTATAACAATGGGGGTGGTGGAGGTAGCCGCGGCG
GCGGTGCCGGAATGGGCGGCGGCGGTAGGGGTAATGGCATGGGGTGTACT
GAGGGGCGGGACGGTAGCGGTGGTGGTCGAGCCTTCTTGCAAGGGCCGTG
GGTCGTCTTCCGCGTGGCCCGTGAGGAGTACTTAGAGTTTTACGGAGGAC
AGGCGGCGGTTCTCGACCAAGCGGTTGGGGGCTCGGCCGCTGAGTTGGAG
CACATGCTGATGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:326985..327599+

>mRNA_P-littoralis_Contig126.80.1 ID=mRNA_P-littoralis_Contig126.80.1|Name=mRNA_P-littoralis_Contig126.80.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig126:326985..327599+ (Pylaiella littoralis U1_48)
CACTACCGGGAACAAATCATCCCTACCGCCCTCGAGCTGTACGCCTCCCT
GCCGCAAGACGTGCTGGAAGGGGTGGACCTCGAGGTGGGGCACACGCTAC
CGGAGAGCATGTTCGTCGTCACCGGCACGGCGCGACCTTCCTGGCCTCGC
TGGGGGGAAAACCTCCCCTCGACGGGGACGGGGACGGCGACATCTCCGAC
GGTCGTAGCAGGGGGAGAAGCGGGAGCAGGAGGAACGGGAAATAATTCTC
CCGGTAGCCGCGGCGGCGGTGCCGGAATGGGCGGCGGCGGTAGGGGTAAT
GGCATGGGGTGTACTGAGGGGCGGGACGGTAGCGGTGGTGGTCGAGCCTT
CTTGCAAGGGCCGTGGGTCGTCTTCCGCGTGGCCCGTGAGGAGTACTTAG
AGTTTTACGGAGGACAGGCGGCGGTTCTCGACCAAGCGGTTGGGGGCTCG
GCCGCTGAGTTGGAGCACATGCTGATGTGA
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