mRNA_P-littoralis_Contig126.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.79.1
Unique NamemRNA_P-littoralis_Contig126.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig126.79.1 vs. uniprot
Match: D8LDV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV1_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.030e-19
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MPLSRVREFIAVDGGPTPRDAVLLKSLLVVYEGIAWAADRPHYR 132
            MPLSR+R FI VDGGPTPRDAVLLKSLL+V+EGIAWA DRPHYR
Sbjct:    1 MPLSRIRAFIGVDGGPTPRDAVLLKSLLIVHEGIAWAVDRPHYR 44
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BLAST of mRNA_P-littoralis_Contig126.79.1 vs. uniprot
Match: A0A6H5KV82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV82_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.690e-18
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MPLSRVREFIAVDGGPTPRDAVLLKSLLVVYEGIAWAADRPHYR 132
            MPLSR+R FI VDGGPTPRDAVLLKSLLVV+EGIAWA DRPHYR
Sbjct:  733 MPLSRIRAFIGVDGGPTPRDAVLLKSLLVVHEGIAWAVDRPHYR 776
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDV1_ECTSI2.030e-1986.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV82_9PHAE2.690e-1888.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:326517..326651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789556.4898868-CDS-P-littoralis_Contig126:326516..3266511680789556.4898868-CDS-P-littoralis_Contig126:326516..326651Pylaiella littoralis U1_48CDSP-littoralis_Contig126 326517..326651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.79.1prot_P-littoralis_Contig126.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 326517..326651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.79.1

>prot_P-littoralis_Contig126.79.1 ID=prot_P-littoralis_Contig126.79.1|Name=mRNA_P-littoralis_Contig126.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp
MPLSRVREFIAVDGGPTPRDAVLLKSLLVVYEGIAWAADRPHYRQ
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mRNA from alignment at P-littoralis_Contig126:326517..326651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.79.1 ID=mRNA_P-littoralis_Contig126.79.1|Name=mRNA_P-littoralis_Contig126.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig126:326517..326651+ (Pylaiella littoralis U1_48)
ATGCCGCTAAGCCGAGTCCGCGAGTTCATCGCCGTCGATGGGGGACCGAC
GCCTAGAGACGCCGTGCTGCTGAAGTCCCTCCTAGTGGTGTACGAGGGGA
TCGCCTGGGCCGCGGATCGCCCTCACTACAGGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:326517..326651+

>mRNA_P-littoralis_Contig126.79.1 ID=mRNA_P-littoralis_Contig126.79.1|Name=mRNA_P-littoralis_Contig126.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig126:326517..326651+ (Pylaiella littoralis U1_48)
ATGCCGCTAAGCCGAGTCCGCGAGTTCATCGCCGTCGATGGGGGACCGAC
GCCTAGAGACGCCGTGCTGCTGAAGTCCCTCCTAGTGGTGTACGAGGGGA
TCGCCTGGGCCGCGGATCGCCCTCACTACAGGCAA
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