prot_P-littoralis_Contig126.45.4 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig126.45.4
Unique Name	prot_P-littoralis_Contig126.45.4
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	1244

Homology

[Close]

BLAST of mRNA_P-littoralis_Contig126.45.4 vs. uniprot
Match: A0A6H5JGI2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGI2_9PHAE)

HSP 1 Score: 538 bits (1385), Expect = 9.270e-168
Identity = 374/683 (54.76%), Postives = 426/683 (62.37%), Query Frame = 0

Query:  148 SVAAVVAELRLGKGAVLPGRAAGLQASLCGKRGRRALQASEGLSDEVKTRFPRQAAQAARLTTVEQQLDKRINKVRRRLLYKLEQFEWPSKCLRTWLSLEVTSTPKAGQTRRRHQQQHQXXXXXXXXXXXXXXXXXXXXXXXXXXKG---------------------KREGNGQQHGTGGKSAXXXXXXXXXXXXXXXFEXXXXXXXXXXXXTAKGGGEAWEGKEEEPEVEMDWFVQARLEGTLVGAPEDGVERRFTSFFERVALELDAKAFPDVAAVQWTRSKGCEELHCVELRLPLSSCLARGLKETSVKATLVPRTDEDRPCRFV-----------------LSAPLRKALRLNKCVETKLVLVAAVYEALRQKGVLPGG-----------------GGQRERGGLARPDGGAAGGGIMLNCDPALASVFGASSFPFSQLEQALGPHVEPADAPSLVATVALAKGNREETILDVTVDTETPFRLQAAKSLLG---GAGRGGRGQGSLLCDSGAASDTATEEXXXXXXXXXXXXXXXGGTAEENLKKTAPVVEDERGGQGNQTRALGVLTVAEREADAQVGRQVAYLVEAVNSSGRRAAMLRALSETPLETVPRLEAQMQEDEERLAAAAGVERPPRPGEVGPWLDSTVCEQLVKARAEDLRKQHMQRKALEEAARVRAQ 772
            S+ + VA+LR G+ AVLPGR AGLQA+LCGKRGRRAL+ SEGLSDEVK RFPRQA QAARLT VE+QLDKRIN+VRR+LLYKLEQ EWPSKCLRTWLSLEVTS PK GQ  R  Q   QXXXX                      KG                     +R G G +      +A  XXXXXXXXXXXXX  XXX            GG           +VE++WFV ARL+G+LVGAP DGVERRFTSFF  VALELD KAFPDVAAV+W RS  CEELHCVELRLPL+ CL+RGLKE SVKA L  R DEDRP RFV                 +SAPLR+ LRL K V+TK VL+AAVYEALR KG LPGG                                      ML+CDP LA V GASSFPFSQLE+ALGPHVEPA++PSLVATV+L KGN  ET  DVTVDTETPF+L+AA+SLLG   G G GG  +G+   +   A +                    GG AE              GG+G+ TRALGV TV EREA+ Q+GRQ++YL EAVN+SGRRAAMLRALSE PLE  PRL+AQM+ DEE LAAAA VERP R GE   W D+ VC ++V+ RAE LRK+ MQ+ ALE   RVRA+
Sbjct:  139 SIISAVADLRQGRSAVLPGRGAGLQAALCGKRGRRALRTSEGLSDEVKKRFPRQADQAARLTEVEEQLDKRINRVRRKLLYKLEQLEWPSKCLRTWLSLEVTSAPKPGQ--RGRQPPQQXXXXSRPGAESGKQGNRRGKMPATSGKGTEGTPPSXXXXXXXXXXXVGARRAGAGTEQEAASVAAPKXXXXXXXXXXXXXXXXXXDDGMKAVDAGGDGG-----------DVELEWFVLARLQGSLVGAPADGVERRFTSFFSSVALELDGKAFPDVAAVEWVRSARCEELHCVELRLPLAGCLSRGLKEISVKAVLAARVDEDRPRRFVPPKSCPVRTARHLVPFVVSAPLRQVLRLTKRVDTKPVLMAAVYEALRLKGALPGGTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMLHCDPELARVLGASSFPFSQLEEALGPHVEPAESPSLVATVSLEKGNAVETCADVTVDTETPFQLRAAQSLLGSDGGRGAGGSAEGAPRQNGALAVEQRA--------------GLGGGPAE--------------GGRGH-TRALGVPTVEEREAELQIGRQISYLAEAVNASGRRAAMLRALSEAPLEAFPRLDAQMRADEELLAAAADVERPRREGEAELWSDAGVCARVVQGRAEALRKEQMQQ-ALEADIRVRAE 778

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig126.45.4 vs. uniprot

BLAST of mRNA_P-littoralis_Contig126.45.4 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JGI2_9PHAE	9.270e-168	54.76	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 841..872
None	No IPR available	COILS	Coil	Coil	coord: 763..835
None	No IPR available	COILS	Coil	Coil	coord: 1110..1130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1148..1171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 850..878
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 915..1243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 915..951
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..356
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1015..1036
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 861..878
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1111..1137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 958..1002
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1040..1056
None	No IPR available	PANTHER	PTHR11246:SF20	TPR-CONTAINING PROTEIN DDB_G0280363	coord: 257..836
IPR045075	Pre-mRNA-splicing factor Syf1-like	PANTHER	PTHR11246	PRE-MRNA SPLICING FACTOR	coord: 257..836

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig126	contig	P-littoralis_Contig126:154542..173349 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig126.45.4	mRNA_P-littoralis_Contig126.45.4	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig126 154542..173432 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig126.45.4 ID=prot_P-littoralis_Contig126.45.4|Name=mRNA_P-littoralis_Contig126.45.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1244bp
MALPAGMGLSAAAAAAGYAFQNSPSTTTPQQRQQLELAELLLSGHNAPAA
PSQPEDTLLGGLAALGGGSGSLTPPAGAAGATAGGAIHLTRSASGRAAAA
AAAAAAAAAASRDQHQGHAMQQHEDRAPPPPRVMSVRSLPPPTPTPPSVA
AVVAELRLGKGAVLPGRAAGLQASLCGKRGRRALQASEGLSDEVKTRFPR
QAAQAARLTTVEQQLDKRINKVRRRLLYKLEQFEWPSKCLRTWLSLEVTS
TPKAGQTRRRHQQQHQQHQQQYQQHPQRRRVGEKGKRPNQKGKGKREGNG
QQHGTGGKSAAAAAAVARGGAGAEGFENGGAAARGGGGDTAKGGGEAWEG
KEEEPEVEMDWFVQARLEGTLVGAPEDGVERRFTSFFERVALELDAKAFP
DVAAVQWTRSKGCEELHCVELRLPLSSCLARGLKETSVKATLVPRTDEDR
PCRFVLSAPLRKALRLNKCVETKLVLVAAVYEALRQKGVLPGGGGQRERG
GLARPDGGAAGGGIMLNCDPALASVFGASSFPFSQLEQALGPHVEPADAP
SLVATVALAKGNREETILDVTVDTETPFRLQAAKSLLGGAGRGGRGQGSL
LCDSGAASDTATEEGAAATAAVAQGGGETGGTAEENLKKTAPVVEDERGG
QGNQTRALGVLTVAEREADAQVGRQVAYLVEAVNSSGRRAAMLRALSETP
LETVPRLEAQMQEDEERLAAAAGVERPPRPGEVGPWLDSTVCEQLVKARA
EDLRKQHMQRKALEEAARVRAQQQLQLQLLQQQQQQQRKEARAAAAAAAA
KAQAQASQAAAAAAAAKQAAEREVLLQQHQQQQQQVNLLRLREAQERVLR
EERETEQRQQHHQQQLQMQEQKAFQSTHQLQANQAARLRAAAETPTAIPT
AGVLQGENLLLMRMRKQLQKQQQHQQLVSSRQSVPSPCPSATSSHHSTVR
AAVGSSPGHALPQQQQQQQQSTLPPWSPRTSVGMMPGQQQELLLQQQQQL
PLPLLGDEVGQTVQHHLHRQQQQQKQQQQQHQGRGTAAVDSAAEDERDRE
LEQTLLSPFDDPDPSPLPQQQSEHPSPNQQAHKQHRYDQWPGISPGEYQQ
TPDEMRGDHNLQAENSWQQQQQQAQQQEQQGSSPVLFNDRQRHMREYQQL
AHLTQPQQQQQAQTAAPSAPDAPSSPATAGGGGGRERLEQLHHHHQQQQQ
QRNHQGQRGKQGKQQQHRVEAPLYMGWPPQADHGHRGGDRKRP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR045075	Syf1-like