mRNA_P-littoralis_Contig126.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.34.1
Unique NamemRNA_P-littoralis_Contig126.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig126.34.1 vs. uniprot
Match: A0A6H5KFL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.930e-27
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 2 
Query:  329 TVWSKQMQQTNVAKLDKHVKGKHGEEKWTREDFLQKRQQLVDGKLLSVDQSFKFAKLVRVRLAGRGSDTKPSHSVVTFFDEFEQAPQ 589
            TVW ++MQ++  A+LDKHV G  GE KWTREDFLQ+RQQ VDG +L VD SFK AKLVRVR  G  +DTKP H VVT F+EFEQA Q
Sbjct:   69 TVWCERMQRSRAARLDKHVNGVQGESKWTREDFLQRRQQQVDGTVLKVDASFKLAKLVRVRAPGAAADTKPFHCVVTLFNEFEQATQ 155
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BLAST of mRNA_P-littoralis_Contig126.34.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.520e-8
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  211 DADVRILLPLYV*ESFPFLLTRKSAIHRDVMAEVTDNLMH 330
            ++DV  LLPLYV ESFPF LTRKSAIHRDV+AEV DNLMH
Sbjct:    6 NSDVLALLPLYVQESFPFFLTRKSAIHRDVVAEVADNLMH 45
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BLAST of mRNA_P-littoralis_Contig126.34.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.070e-7
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 2 
Query:  332 VWSKQMQQTNVAKLDKHVKGKHGEEKWTREDFLQKRQQLVDGKLLSVDQSFKFAKLVRVRLAGRGSDTKPSHSVVTFFDEFEQ 580
            +W K   +T V + D           WTRE++LQ+R QLVDG  L+ D SFK+AK++R+     G+  +P H + T  +E++Q
Sbjct:  227 IWHKGFYETPVVQADGCS--------WTREEYLQRRAQLVDGCSLAGDASFKYAKVIRLSAGADGTRARPVHGIFTIMNEYDQ 301
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BLAST of mRNA_P-littoralis_Contig126.34.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.520e-6
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 2 
Query:  332 VWSKQMQQTNVAKLDKHVKGKHGEEKWTREDFLQKRQQLVDGKLLSVDQSFKFAKLVRVRLAGRGSDTKPSHSVVTFFDEFEQAPQ 589
            VW K    T V + D          + TRED+LQ+  QLVDG +L+ D SFK+AK++R+  AG  + +KP   + T  +E+EQA +
Sbjct:   67 VWHKWFYDTVVIEADGV--------RMTREDYLQRVGQLVDGMVLAGDASFKYAKVIRLTSAGESTKSKPIQGIFTILNEYEQAAE 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KFL9_9PHAE7.930e-2766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE8.520e-880.003'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FIV2_ECTSI7.070e-737.353'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI1.520e-639.533'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:81818..84641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIV2
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size1782
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons6
Evalue2.3e-09
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size312
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.34.1prot_P-littoralis_Contig126.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 82958..83918 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789554.3534436-UTR-P-littoralis_Contig126:81817..825181680789554.3534436-UTR-P-littoralis_Contig126:81817..82518Pylaiella littoralis U1_48UTRP-littoralis_Contig126 81818..82518 -
1680789554.3640568-UTR-P-littoralis_Contig126:82534..829571680789554.3640568-UTR-P-littoralis_Contig126:82534..82957Pylaiella littoralis U1_48UTRP-littoralis_Contig126 82535..82957 -
1680789554.404894-UTR-P-littoralis_Contig126:83918..839351680789554.404894-UTR-P-littoralis_Contig126:83918..83935Pylaiella littoralis U1_48UTRP-littoralis_Contig126 83919..83935 -
1680789554.4140124-UTR-P-littoralis_Contig126:84135..842931680789554.4140124-UTR-P-littoralis_Contig126:84135..84293Pylaiella littoralis U1_48UTRP-littoralis_Contig126 84136..84293 -
1680789554.4315405-UTR-P-littoralis_Contig126:84470..846411680789554.4315405-UTR-P-littoralis_Contig126:84470..84641Pylaiella littoralis U1_48UTRP-littoralis_Contig126 84471..84641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789554.3766565-CDS-P-littoralis_Contig126:82957..830351680789554.3766565-CDS-P-littoralis_Contig126:82957..83035Pylaiella littoralis U1_48CDSP-littoralis_Contig126 82958..83035 -
1680789554.3859186-CDS-P-littoralis_Contig126:83553..837301680789554.3859186-CDS-P-littoralis_Contig126:83553..83730Pylaiella littoralis U1_48CDSP-littoralis_Contig126 83554..83730 -
1680789554.3954408-CDS-P-littoralis_Contig126:83861..839181680789554.3954408-CDS-P-littoralis_Contig126:83861..83918Pylaiella littoralis U1_48CDSP-littoralis_Contig126 83862..83918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.34.1

>prot_P-littoralis_Contig126.34.1 ID=prot_P-littoralis_Contig126.34.1|Name=mRNA_P-littoralis_Contig126.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MQQTNVAKLDKHVKGKHGEEKWTREDFLQKRQQLVDGKLLSVDQSFKFAK
LVRVRLAGRGSDTKPSHSVVTFFDEFEQAPQPRQYGGGHFAVEIQGASGQ
AAP*
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mRNA from alignment at P-littoralis_Contig126:81818..84641-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.34.1 ID=mRNA_P-littoralis_Contig126.34.1|Name=mRNA_P-littoralis_Contig126.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2824bp|location=Sequence derived from alignment at P-littoralis_Contig126:81818..84641- (Pylaiella littoralis U1_48)
TGACGGGCGGCTCCCGTGCCCGCGCTGCAAGAGCACACCAAACATGTGAT
CGTCAAGGGGTGGACGCAAAAAGGCTCTCGCAGATGCATCCTGCGGGATA
GGTGCGGCGACATGCCGGGCAAGTACTACTCCTGCAGCTGGTGCAACGAG
AGCAACAAATCGAAGCCCAAGGCAAGTGTGGCATCCAATGCTGGAAGGCA
GCAATATCGTACCCTTTGTATCTCCAATGCTGAAATACGTTACTCTTTAA
ATTCTGTAAGGTACTCCACGTCCACCTGTACGCAAGGCTCCTCCTCACAC
GTGTCTTCCGCGCCTCTCTTCCTCGTGTCCGCATTTCCGAACTAACAGGG
TTGCAAAACTCGAGTCCCCGTGACTTTCCAGGGCTGGGATGCAGACGTGC
GGATACTGCTTCCGTTGTACGTGTAAGAGAGTTTCCCGTTCTTGCTGACA
CGCAAGTCCGCCATTCACCGTGACGTGATGGCGGAAGTGACGGACAACTT
GATGCATGCGAAGGGCTTCAAAGCGTCAAGCAAGGCCTTGCAGCAGGCAC
ACCGGCGGGAGATTCATGCCGCCGAGCTCAAATACTACAACATGCTTCTG
TGGCGCAGAGCAGAGCAGCTGGGTTCAGGGGCGGAGGGCGGGTTTGGGTC
CTTCGAGGATGTGGACGGATACAACGGCTTTTTCCCAACAGCGCATTGTC
TGTCTACGGTGTGGTCCAAGCAGATGCAGCAGACCAACGTGGCGAAGCTC
GACAAGCACGTGAAAGGAAAGCATGGCGAGGTGCGTCGAGAGATACATGC
AACGCTTGGGTGTAGCAGTAGGCTGATACCGACGTTGACCGCTTATCGAA
TGCTGTTGTAGTAAAAGGTGGTTTGATGTGTGGTTTTCTCTTCCATCTTT
GCCCGTAACAGGAAAAGTGGACACGGGAGGACTTTCTTCAAAAGCGTCAG
CAGCTAGTTGATGGTAAATTGCTCTCTGTAGACCAGTCGTTCAAGTTCGC
AAAGCTTGTACGGGTACGACTTGCTGGCCGTGGTTCGGACACTAAGCCTT
CCCACTCCGTGGTCACCTTTTTCGACGAGTTTGAACAGGCAAGTGCGGAA
TGTCAGATGATATGTTAGATTTTGATGATGGTGGTAGCCCACCCTCAAGA
GCCCCCCCCCATAATGGTTCGGGGTTGTTGAAAATACGAGTTTGCCCCGG
CATGTTGTGGAACCCCCCCCTCATCAGAGTTAGCGTATTGACGTGTGTGC
GCATGCTATTATCAAAACGCAGAGTCCCTGATGTGTTGCAGTTCTGGTAA
CCATGCATTTGTGGTATTTAAAATGCATGATACGTACCCGCTTTGCTGCA
GCTTGTAGTACACGTTTCGACGCAGATTCCGGTACCCCTCTCTTGTTGTT
TTGTGTATCCAATAGAGGAAACGATAATCCAGGATTTCACTAGTCAAGAC
CAAGGAAATTATGATTCAGGGTTTCATGAAAAGAGACCTTCTTTGAGCTT
TCTGAACAACGCATTCATTCTTATTTGACATGTTTTTCAACAATAGATGT
GGCATGCCCACCTCATTCACAGCTTCGCGCTTGCTCGTATAACTTCCCTG
TGACAGGCGCCTCAACCACGTCAATACGGTGGGGGACACTTTGCTGTCGA
GATTCAAGGCGCCAGTGGTCAGGCGGCTCCTTAGATTGGCGCCGCTGTTG
GCTTTGCTGCCCCAGCGCTCAGACGTGGTAAACGGTGGTGGCTTCAAGAT
GCGAGCGGGGACATTCGAACGTCGTTACTATCAGTTTGTAATAGCTCGAG
GGTCAAGCTGCACGGTACCAGAGAACCTCTGCCGCGTGTCGAGACCCATC
AGGAAAATTGGTGGGAATTGCAAGTGTAGGAGGAATGCTGGTCATCCTCG
AGGCTGCAGGTCAACGTCGTGGAAAAGTAGTGTAAAGAGAGCACAGAAAG
AACATCTCTGCGCTTTGGGATCTCCCTCTACAACTTCGTGGGCATGTCTT
GGTTAAATGAAGGGTGCAGCGGGTTGCTGGTAGGAGTTCCCGTTGGATCG
TTTTATTGACATGAGCGAATAACTCGGATAGTATCAAAGTTCATTTACCT
GGTAGATGTGATATACCTGGTAGATGTGATCGAAATACCCGTGCTTATTC
AAATACGGCGTAATCCAAAGGAGATCTGGGTAATTTGTTTGAATGTGATA
GTAGAAGGCGTGTTAACCTCGGATGACAGTAGTACCGCGGGATAGATGGA
AAAGCGAGGAATCAGTTTCTTGCCGATGAGAGAAACCCATCCTCGCACCA
TCTCTCTGTATAGAACCTGTAAGCACTTTCTGTGCGAGGTCGGTCATAGC
CTATCTACTTTCACCCGACAATACGAGCAACCCATGCCCGGGTCCATGTA
TCAAGAAGTACAACAACAAATATAAATCTCCTCGCCCTTTTTGCCGCATT
TGAGGGATGTTCGCTGGACAGAAGTACTTACCTCGTAAATTATTTATAAC
TTCATTTTGATGTCGTCCATGTTGGGAGATTCTACTTCACCAGACGTGCG
CCTCTCTGAGCCTTGCTATTAAAGTAAAAAAGTGCTCGAAAACGGTGGGC
ACAGTCACCATAGAAGAAGGAAATGGACAACGGTTGTTGTACCGAGGAAA
TTTGATGTCTGCTATTGCCCGGTGCGATGACGACTGGGAGAAAATCTTTT
TTGTTTTGCTTTTTGATGGGTGGTGATAAAAAATGATTCCTGGTACTTCG
AAGAACTGAGGCTGGCTGCTGTTGTTTTTATGTAAAAAATCTATACCTGG
TAGGTTTTTAAAGCAACATTTCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:81818..84641-

>mRNA_P-littoralis_Contig126.34.1 ID=mRNA_P-littoralis_Contig126.34.1|Name=mRNA_P-littoralis_Contig126.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig126:81818..84641- (Pylaiella littoralis U1_48)
ATGCAGCAGACCAACGTGGCGAAGCTCGACAAGCACGTGAAAGGAAAGCA
TGGCGAGGAAAAGTGGACACGGGAGGACTTTCTTCAAAAGCGTCAGCAGC
TAGTTGATGGTAAATTGCTCTCTGTAGACCAGTCGTTCAAGTTCGCAAAG
CTTGTACGGGTACGACTTGCTGGCCGTGGTTCGGACACTAAGCCTTCCCA
CTCCGTGGTCACCTTTTTCGACGAGTTTGAACAGGCGCCTCAACCACGTC
AATACGGTGGGGGACACTTTGCTGTCGAGATTCAAGGCGCCAGTGGTCAG
GCGGCTCCTTAG
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