mRNA_P-littoralis_Contig126.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.29.1
Unique NamemRNA_P-littoralis_Contig126.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Match: A0A6H5JBD2_9PHAE (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD2_9PHAE)

HSP 1 Score: 486 bits (1252), Expect = 1.250e-167
Identity = 236/268 (88.06%), Postives = 251/268 (93.66%), Query Frame = 2 
Query:  113 LAVVSFAALGSHAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDELLHNLGSVPEDYRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQERHLASAIDRSFGSFAEMQYAFSNAASAFSGSGWAFLYYDHGKENLDVVVLENQDTPAMNPKTTPILLLDLWEHAYYLDHENRKDVYITNFWASVDWPRVATLYAEASGEVVPEALPSPERREKDAVGLTP-VDDASKALLVEE 913
            LA+ + AA+G+ AQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHA+YTSQLNAVLE+MRWDPELKHLAKMGVDELLHNL SVPEDYR AARRAGGGFVNHDLFWNVLSPWGGHPPGQES+TIQERHLA AIDRSFGSFAEMQYAFSNAASAFSGSGW FLY++H ++ LDVVVLE +DTPAMNP TTPILLLDLWEHAYYLD+ENRKDVYITNFWASVDWPRVAT YAEASGEVVPEALPSPERREK AVGLTP + DA KALL E+
Sbjct:   17 LALSTLAAVGTSAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHAAYTSQLNAVLERMRWDPELKHLAKMGVDELLHNLESVPEDYRAAARRAGGGFVNHDLFWNVLSPWGGHPPGQESDTIQERHLAEAIDRSFGSFAEMQYAFSNAASAFSGSGWVFLYFNHEEKTLDVVVLEYEDTPAMNPNTTPILLLDLWEHAYYLDYENRKDVYITNFWASVDWPRVATRYAEASGEVVPEALPSPERREKGAVGLTPALQDADKALLAED 284
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BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Match: A0A836CJJ6_9STRA (Superoxide dismutase [Fe] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ6_9STRA)

HSP 1 Score: 315 bits (807), Expect = 1.240e-100
Identity = 149/265 (56.23%), Postives = 189/265 (71.32%), Query Frame = 2 
Query:  107 ALLAVVSFAALGSHAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDELLHNLGSVPEDYRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQERHLASAIDRSFGSFAEMQYAFSNAASAFSGSGWAFLYYDHGKENLDVVVLENQDTPAMNPKTTPILLLDLWEHAYYLDHENRKDVYITNFWASVDWPRVATLYAEASGEVVPEALPSPERREKDAVGLTPVDDASKAL 901
            A +A +SF A  + AQ+LPVPPLPY+Y SL P+I    ++VHHLGHHA+YT Q+N  LE MR DP +KHLAKMG+DELLH+L  VPE + G  R AGGG+VNHDL+W  LSPWGG PP   S TIQER   +A+DR+FGS  +++ AF  AA+A  GSGW FLY++     L++      DTPAM+P+  P+LLLD+WEHAYYL H+N +  Y+  FW  VDWP  AT YA ASGEV PE LP+P+ REK  VGL P D+ ++A+
Sbjct:    7 AAVAALSFVA-AALAQHLPVPPLPYAYDSLEPWIDAATMKVHHLGHHAAYTKQVNGALEVMRADPNMKHLAKMGIDELLHHLDEVPEQHAGTIRNAGGGYVNHDLWWKSLSPWGGVPPTDASPTIQERRFKAAVDRTFGSVDKLKDAFGTAAAAVFGSGWTFLYFNKKARTLEITNTAGHDTPAMDPEKAPLLLLDMWEHAYYLKHQNMRAAYVDAFWHVVDWPAAATRYALASGEVAPEPLPAPDAREKQRVGLVPTDERAEAV 270
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BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Match: D7FYD2_ECTSI (Superoxide dismutase, Destroys radicals which are normally produced within the cells and which are t n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD2_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 5.610e-75
Identity = 120/149 (80.54%), Postives = 128/149 (85.91%), Query Frame = 2 
Query:   41 MGKTRSTPPALVAGDAVRHGLAALLAVVSFAALGSHAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDELLHNLGSVPEDYRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQE 487
            MGK  STP  +             LA+ + AA+G+ AQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHA+YTSQLNAVLE+MRWDPELKHLAKMGVDELLHNLGSVPEDYR AARRAGGGFVNHDLFWNVLSPWGGHPPGQES+TIQE
Sbjct:    3 MGKKSSTPTLV----------GRCLALSTLAAVGASAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHAAYTSQLNAVLERMRWDPELKHLAKMGVDELLHNLGSVPEDYRAAARRAGGGFVNHDLFWNVLSPWGGHPPGQESDTIQE 141
[Close]
BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Match: A0A6V2WS91_HETAK (Superoxide dismutase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WS91_HETAK)

HSP 1 Score: 223 bits (569), Expect = 1.460e-65
Identity = 114/233 (48.93%), Postives = 145/233 (62.23%), Query Frame = 2 
Query:  113 LAVVSFAALGSHAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDELLHNLGSVPEDYRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQERHLASAIDRSFGSFAEMQYAFSNAASAFSGSGWAFLYYDHGKENLDVVVLENQDTPAM-NPKTTPILLLDLWEHAYYLDHENRKDVYITNFWASVDWPRVATLYAEAS 808
            L V  F+A    AQNLPVPPLPY Y +L PF+ E  +RVHHLGHHA+ T  LN VL  +R  PE KHLAKMGVD+LLH+L  VPE++R A   AGGG+VNH+LFWN L+P G    G       +  L   +   FGS   ++ A   AA    GSGW +L Y+     L+++   NQ+ PA  +P + P+L LDLWEHAYYL H+NR+  Y+  FWA +DW  VA    +AS
Sbjct:   11 LLVACFSAHRCGAQNLPVPPLPYDYNALEPFMDEETVRVHHLGHHAASTHALNKVLSTLREHPETKHLAKMGVDKLLHHLDEVPEEFRTAVANAGGGYVNHELFWNTLAPGGXXXXGPV-----DARLLDEVAARFGSAEGLREALGEAAGQLYGSGWVWLVYNSLSAQLEILTTANQEHPAAAHPGSFPLLALDLWEHAYYLKHQNRRADYVEAFWALIDWEEVARRLEDAS 238
[Close]
BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Match: A0A2R5GX41_9STRA (Superoxide dismutase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GX41_9STRA)

HSP 1 Score: 203 bits (517), Expect = 6.310e-58
Identity = 103/209 (49.28%), Postives = 130/209 (62.20%), Query Frame = 2 
Query:  149 AQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDELLHNLGSVPEDYRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQERHLASAIDRSFGSFAEMQYAFSNAASAFSGSGWAFLYYDHGKENLDVVVLENQDTPAMNPKTTPILLLDLWEHAYYLDHENRKDVYITNFWASVDW 775
            AQNLP+PPLPY+Y +L P+I E  +R+HHL HH +YT  LN  L  MR DPELKHLAKMG+D+LL +L  VP   RG  R  GGG+VNHD FW  LSP G   PGQ S       L  AI++SFGS    +  FS A     GSGW +L ++   + L V    NQD+P  +     I+ LD+WEHAYYL H+NR+  Y+   +A +DW
Sbjct:   28 AQNLPLPPLPYAYDALEPYIDEQTMRIHHLKHHQAYTDNLNKALATMRGDPELKHLAKMGIDKLLQHLDEVPPRLRGQVRNHGGGYVNHDQFWRNLSPNGAGEPGQGSA------LQHAIEKSFGSLDGFKTVFSEACLGVFGSGWCWLCFNTEAQTLSVETTSNQDSPT-SAGLEVIIALDVWEHAYYLKHQNRRKDYLEAIFAVLDW 229
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BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Match: A0A7S3RJC8_EMIHU (Superoxide dismutase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RJC8_EMIHU)

HSP 1 Score: 197 bits (502), Expect = 8.150e-56
Identity = 105/230 (45.65%), Postives = 143/230 (62.17%), Query Frame = 2 
Query:  119 VVSFAALGSHAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDELLHNLGSVPED-YRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQERHLASAIDRSFGSFAEMQYAFSNAASAFSGSGWAFLYYDHGKENLDVVVLENQDTPAMNPKTTPILLLDLWEHAYYLDHENRKDVYITNFWASVDWPRVATLYAEA 805
            +V+F A  + AQNLP+PPLPY+Y +L P I    +  HH  HH +YT++LNA LE +R DP  K LAK+G+D LL  L  + +   R A R AGGGFVNH+LF+  +SP GG       + ++   L +AI  +FG+ A ++ A S +A    GSGWA+L  D   + L V    NQDTPAM+  T P+L +D+WEHAYYL H++R+  YI ++W  V WP VA  Y  A
Sbjct:   11 LVAFTA-STAAQNLPLPPLPYAYDALEPHIDATTMEEHHSKHHRAYTNKLNAALETLRGDPATKALAKLGIDTLLQRLDQITDSKLRAAVRNAGGGFVNHELFFATMSPDGG------GDIVEHAGLNAAIVSAFGTMAMLKRALSLSALEVFGSGWAWLALDRRSDKLVVQSTPNQDTPAMDASTVPLLGIDVWEHAYYLKHQSRRADYIKDWWHVVSWPEVARRYDAA 233
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BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Match: L1I7G7_GUITC (Superoxide dismutase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I7G7_GUITC)

HSP 1 Score: 191 bits (486), Expect = 1.700e-53
Identity = 98/221 (44.34%), Postives = 127/221 (57.47%), Query Frame = 2 
Query:  143 SHAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDELLHNLGSVPEDYRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQERHLASAIDRSFGSFAEMQYAFSNAASAFSGSGWAFLYYDHGKENLDVVVLENQDTPAMNPKTTPILLLDLWEHAYYLDHENRKDVYITNFWASVDWPRVATLYAEA 805
            S AQNL +P LPY Y  L P + E  +RVHHLGHHA+Y + +N VL  +R +   K LAKMG+D+LL NL  VP ++    R  GGGFVNH LFW  +SP G       +    +     A+   FGS   +   F   A+   GSGW +L  +H  + L +    NQDTPAM     PIL LDLWEHAYYL H+N++  YI++F+  +DW   A  Y EA
Sbjct:   20 SLAQNLELPRLPYEYDGLEPHVDEETMRVHHLGHHAAYLATVNNVLSMLRSNETTKPLAKMGIDKLLQNLDQVPTEHVTPLRNGGGGFVNHFLFWKCMSPNG-------TRFEMDDVFGKAVTAQFGSIQALLQEFREKATKLFGSGWTWLVLEHSTKRLYITTTPNQDTPAMQVGHIPILGLDLWEHAYYLKHQNKRAEYISSFFNVIDWKATAARYEEA 233
[Close]
BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Match: A0A3M2A1R1_9CHLR (Superoxide dismutase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M2A1R1_9CHLR)

HSP 1 Score: 188 bits (478), Expect = 7.880e-53
Identity = 104/214 (48.60%), Postives = 132/214 (61.68%), Query Frame = 2 
Query:  164 VPPLPYSYGSLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDELLHNLGSVPEDYRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQERHLASAIDRSFGSFAEMQYAFSNAASAFSGSGWAFLYYDHGKENLDVVVLENQDTPAMNPKTTPILLLDLWEHAYYLDHENRKDVYITNFWASVDWPRVATLYAEA 805
            +P LPY+Y +L P+I    + +HH  HHA YT+ LN  LE     PEL   A   ++ELL NL +VPE  R A R  GGG+ NH LFW ++SP GG  P  E        LA+AI+ +FGSFA  +  FS AA+   GSGWA+LY D    NL V    NQDTP M+  T PIL LD+WEHAYYL+++NR+  YI N+W  V+W +VA  YA A
Sbjct:    5 LPALPYAYDALEPYIDARTMEIHHSKHHAGYTNNLNKALEN---HPEL---ANKSIEELLGNLDAVPESIRTAVRNNGGGYANHALFWTIMSPNGGGEPTGE--------LATAINNAFGSFANFKEQFSKAAATRFGSGWAWLYVDKDG-NLAVTSTPNQDTPLMDGNT-PILGLDVWEHAYYLNYQNRRGDYIANWWNVVNWDQVAANYANA 202
[Close]
BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Match: A0A2W4Q0T6_9FIRM (Superoxide dismutase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A2W4Q0T6_9FIRM)

HSP 1 Score: 187 bits (476), Expect = 1.540e-52
Identity = 104/214 (48.60%), Postives = 132/214 (61.68%), Query Frame = 2 
Query:  164 VPPLPYSYGSLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDELLHNLGSVPEDYRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQERHLASAIDRSFGSFAEMQYAFSNAASAFSGSGWAFLYYDHGKENLDVVVLENQDTPAMNPKTTPILLLDLWEHAYYLDHENRKDVYITNFWASVDWPRVATLYAEA 805
            +PPLPY Y +L P+I E  +R+HH  HHA+Y + LNA LE+    PEL++L+   ++ELL N+  VPE+ R A R  GGG  NH LFW +LSP GG  P  E        LA AI  +FGSF + +  FS AA+   GSGWA+L  D  +  L V    NQD+P M   T PIL LD+WEHAYYL ++NR+  YI  FW  V+WP VA  YA A
Sbjct:    5 LPPLPYDYNALEPYIDEQTMRIHHDKHHAAYVNNLNAALEQA---PELQNLS---IEELLRNIDKVPENIRTAVRNNGGGHANHTLFWEILSPQGGGEPTGE--------LADAIAATFGSFEKFKEEFSKAAANRFGSGWAWLVVDQ-EGKLQVYSTANQDSPYMEGHT-PILGLDVWEHAYYLKYQNRRPEYIAAFWNIVNWPEVARRYAAA 202
[Close]
BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Match: A0A3M1HUW2_9CHLR (Superoxide dismutase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1HUW2_9CHLR)

HSP 1 Score: 184 bits (468), Expect = 2.240e-51
Identity = 107/216 (49.54%), Postives = 130/216 (60.19%), Query Frame = 2 
Query:  164 VPPLPYSYGSLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDELLHNLGSVPEDYRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQERHLASAIDRSFGSFAEMQYAFSNAASAFSGSGWAFLYYDHGKENLDVVVLENQDTPAMNPKTTPILLLDLWEHAYYLDHENRKDVYITNFWASVDWPRVATLYAEASG 811
            +P LPY Y  L P I    +RVHH  HHA YT+ LNA +EK    PEL   A +  ++LL N+ SVPED R A R  GGG+VNH LFW V+SP GG  P  E        LA+AI+ +FGSF E +  FS AA    GSGWA+L  D G   L V    NQD+P M   T PIL LD+WEHAYYL+++NR+  Y+  FW  V+W  VA  YA A G
Sbjct:    5 LPALPYGYDDLEPHIGGDTMRVHHGKHHAGYTNNLNAAIEK---HPEL---ADVSAEDLLRNIESVPEDIRTAVRNNGGGYVNHALFWEVMSPKGGGKPSGE--------LAAAIEAAFGSFDEFKAQFSAAAGGRFGSGWAWLVVD-GFGKLRVYSTPNQDSPYMVGHT-PILGLDVWEHAYYLNYQNRRGDYVAAFWNVVNWDAVAQKYAAAKG 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBD2_9PHAE1.250e-16788.06Superoxide dismutase [Fe] n=1 Tax=Ectocarpus sp. C... [more]
A0A836CJJ6_9STRA1.240e-10056.23Superoxide dismutase [Fe] n=1 Tax=Tribonema minus ... [more]
D7FYD2_ECTSI5.610e-7580.54Superoxide dismutase, Destroys radicals which are ... [more]
A0A6V2WS91_HETAK1.460e-6548.93Superoxide dismutase n=1 Tax=Heterosigma akashiwo ... [more]
A0A2R5GX41_9STRA6.310e-5849.28Superoxide dismutase n=1 Tax=Hondaea fermentalgian... [more]
A0A7S3RJC8_EMIHU8.150e-5645.65Superoxide dismutase n=2 Tax=Emiliania huxleyi Tax... [more]
L1I7G7_GUITC1.700e-5344.34Superoxide dismutase n=1 Tax=Guillardia theta (str... [more]
A0A3M2A1R1_9CHLR7.880e-5348.60Superoxide dismutase n=1 Tax=Chloroflexi bacterium... [more]
A0A2W4Q0T6_9FIRM1.540e-5248.60Superoxide dismutase n=1 Tax=Firmicutes bacterium ... [more]
A0A3M1HUW2_9CHLR2.240e-5149.54Superoxide dismutase n=1 Tax=Caldilineae bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:71613..80605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog55529.EKX32032
PFAMsSod_Fe_C,Sod_Fe_N
Model size1752
Max annot lvl2759|Eukaryota
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categorysignal peptide
Exons7
Evalue1.82e-57
EggNOG OGsCOG0605@1|root,KOG0876@2759|Eukaryota
EC1.15.1.1
Descriptionoxidoreductase activity, acting on superoxide radicals as acceptor
Cds size876
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.29.1prot_P-littoralis_Contig126.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 71653..79769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789554.2362533-UTR-P-littoralis_Contig126:71612..716521680789554.2362533-UTR-P-littoralis_Contig126:71612..71652Pylaiella littoralis U1_48UTRP-littoralis_Contig126 71613..71652 +
1680789554.3162496-UTR-P-littoralis_Contig126:79769..806051680789554.3162496-UTR-P-littoralis_Contig126:79769..80605Pylaiella littoralis U1_48UTRP-littoralis_Contig126 79770..80605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789554.247744-CDS-P-littoralis_Contig126:71652..718381680789554.247744-CDS-P-littoralis_Contig126:71652..71838Pylaiella littoralis U1_48CDSP-littoralis_Contig126 71653..71838 +
1680789554.2628508-CDS-P-littoralis_Contig126:73099..732411680789554.2628508-CDS-P-littoralis_Contig126:73099..73241Pylaiella littoralis U1_48CDSP-littoralis_Contig126 73100..73241 +
1680789554.2728248-CDS-P-littoralis_Contig126:73629..737451680789554.2728248-CDS-P-littoralis_Contig126:73629..73745Pylaiella littoralis U1_48CDSP-littoralis_Contig126 73630..73745 +
1680789554.281406-CDS-P-littoralis_Contig126:74188..742861680789554.281406-CDS-P-littoralis_Contig126:74188..74286Pylaiella littoralis U1_48CDSP-littoralis_Contig126 74189..74286 +
1680789554.2897758-CDS-P-littoralis_Contig126:78080..782191680789554.2897758-CDS-P-littoralis_Contig126:78080..78219Pylaiella littoralis U1_48CDSP-littoralis_Contig126 78081..78219 +
1680789554.299814-CDS-P-littoralis_Contig126:79045..791701680789554.299814-CDS-P-littoralis_Contig126:79045..79170Pylaiella littoralis U1_48CDSP-littoralis_Contig126 79046..79170 +
1680789554.3077536-CDS-P-littoralis_Contig126:79699..797691680789554.3077536-CDS-P-littoralis_Contig126:79699..79769Pylaiella littoralis U1_48CDSP-littoralis_Contig126 79700..79769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.29.1

>prot_P-littoralis_Contig126.29.1 ID=prot_P-littoralis_Contig126.29.1|Name=mRNA_P-littoralis_Contig126.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=292bp
MGKTRSTPPALVAGDAVRHGLAALLAVVSFAALGSHAQNLPVPPLPYSYG
SLVPFISEHALRVHHLGHHASYTSQLNAVLEKMRWDPELKHLAKMGVDEL
LHNLGSVPEDYRGAARRAGGGFVNHDLFWNVLSPWGGHPPGQESETIQER
HLASAIDRSFGSFAEMQYAFSNAASAFSGSGWAFLYYDHGKENLDVVVLE
NQDTPAMNPKTTPILLLDLWEHAYYLDHENRKDVYITNFWASVDWPRVAT
LYAEASGEVVPEALPSPERREKDAVGLTPVDDASKALLVEE*
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mRNA from alignment at P-littoralis_Contig126:71613..80605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.29.1 ID=mRNA_P-littoralis_Contig126.29.1|Name=mRNA_P-littoralis_Contig126.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8993bp|location=Sequence derived from alignment at P-littoralis_Contig126:71613..80605+ (Pylaiella littoralis U1_48)
AAGCAGCAGTAGAGCGGCAGCGCAACATATATCACGCACGATGGGAAAGA
CAAGATCCACCCCACCGGCGCTGGTGGCTGGAGACGCCGTCCGGCACGGC
CTTGCAGCTCTACTAGCAGTAGTCTCGTTCGCGGCGTTGGGATCGCATGC
CCAGAACCTCCCGGTGCCTCCGCTGCCTTACTCGTACGGCTCTTTGGTGC
CTTTCATCAGCGAGCATGCCTTGAGGGTGAGTCGTTCGAATTTTTCCTCT
GCAACTTTTTCGATGCAGCGGCTGCGGATGTACAAGCAAATGCAATTTAC
GGAAGATACCCCGTATCCCCGTATCATGGGTCGCGTACGACACCACATCG
CCCTTAAATGTACTGCTACTGCTGTCTGCTGCACTGCTGTACAAGTAGAC
CGTTTGTTTGTGTTTCGGGGAGAGGGTAACCTGCTCGGAAACCGCCGCAA
ACACCGGCACACCATTACAAAGGGGGTGCCACCATCGCAAGATAGATGCC
TACCTGTATGTTTTGAAGAAATCTCTCGACGAGATCGTTCCATCGCCACA
CTTTTCAGCGCCGACACTCGTTCCTCTGCTGTCGACCAATTGAATCGGTT
TACAGGGGTTGTGACACTCGTTCCTCTGCTGTCGACCAATTGAATCGGTT
CACAGGGTGTGTGTGGTTCTTGTGTGAATGTTGTGTGTGTGTTGTTGTCC
CTTTAATTGGACGTCTCTCTACACCTTTCGGGTAGGTAAACGCTCCAACC
GGGGTCACACAGGGGGAAGTCAACACAGGAGTTTTTTTTTTGTTCTCCAC
TTCCCTATGCGGTGCTTGCCTTGTTTTGGTTGAGCTTTTTATCACGAGAA
AGGGGACAGCAACCTCTTTCCCTCGTCGATGGTACGATCGAATTTTTTTT
ACTCACGAATTGATCGCTTTCCACTTCTACGCGCAATGTGAGAAAAAAAC
CCAGATCGTGTCACTGCAATGGGATTCGAACTCACGCGTGAAAGTCAGAA
GGTTGCGTGGATAACCAACTGAGCCACCAGGGCTACCAGCGCTTGTACGG
GTGTAAACATAAAGAGAGAGAGAGAGAGAAGAGGAAAATCGGGGTCACCC
AACCTACAACAATAAGGCGCTCTCGATGTCACTGGTGTGGTCCTCCTCGA
GTATCCCTCTGGAACCTTCCTACGGGGCGGTCGGTCGTAAGTGAAAGCGG
CTCATCACCGAACTCGTATACACACTCATCTGAGCAGTAACAGTGGTATC
ACACAGCAAGTACGCATGCGGGCCCTTGGCTCACGCTCCCACATGTGTAT
GTCGAAAGGGGCAGGCTGCCTGTCAACCAGACGGGATGACAACACACAAT
AGATACTTGGATAGATCCGGTGGACGAGGCGTCGGGGCGGGCCGGTTCGT
GCACATGCACACACGCCATGTGCCTCCTTCTTATTTTCCTGTGCACTGTT
ATTACGCGTCGTGTGTCGCGTTCCGTCGCCATGTCAGGTGCACCACCTGG
GGCACCACGCATCCTACACCTCGCAGCTGAACGCCGTGCTGGAGAAAATG
CGGTGGGATCCGGAGCTGAAGCACTTGGCCAAGATGGGCGTAGATGAGCT
ATTGCACAACCTGGGGAGCGTGCCCGAGGGTGAGGCAGAGGGGTGGGAGC
CAGGAGAGAAAGAGGGAGAGACAGACGGGGGCAGGGATGGGGAAGGGTAG
AGACTGCGTTTCTTCCAAAGACAGCATATCTCGTGACACGAAGGCCACAG
AGCAGTATCGTAGCTGGATGATGGCGTCTTCGTCGTATCGTGCACACCTT
GTCATTTGCTCGCAGGTACGGCCGAGACAACCCTGAACTGATGTCGTTTT
TGATGTTGTTTTTGTTGTGGTGGATCTGTATTGACTCATTGATGTCGATA
CTTTCTTGCTTGCGCGTGCGTAACGTTTTTCGATGCCATTTCCCCTCGCC
TGCCGCTGGGGGGTGGACGGATTGGATACACACAACATGGATGGATGGAC
GGGATGGTGCCAAAAAGACTACCGCGGGGCCGCCCGTCGTGCTGGAGGCG
GGTTCGTGAATCACGATCTGTTCTGGAACGTGCTGTCGCCGTGGGGGGGG
CACCCACCAGGGCAAGAGTCGGAAACTATTCAGGTGTTGGTCCAGATATC
AGGCAGTGAGAGAAACAGGGAGAGGCATGGTCACCTGTTGTTGTTATTAT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTGTTTGTTGTTGTTTTG
GTTTGTTGTGATGTTGCTGCTCTGCTATTAATGTTACCTTTCTTATCGTC
TTGCCGTTTCCTGCTCATATTCCTGGTGCTCTCTAGAGCCGTGTTTCACT
TATGATTCATGGATGGAGATACCTGGACGGGAACCGTTTTTTTTTTCTGG
AGTACTCAAGATTGGCACCTCAGTAGGTAATGCTCTGCTTCGGCTGGACA
GAGCGAGCGCTCCACACGCGAATATACGCGCACGCCAGCACACATACCCA
CGCAACAATCTCCTCGTGTTGCTTTCTTCCCCCGTGTGTACGCCATCGCC
GCCGCCGCCGCTACCGCCATGCGTAGGAACGGCACTTGGCGAGCGCAATC
GACCGTTCGTTCGGCTCCTTCGCCGAGATGCAGTACGCTTTCTCGAATGC
GGCCTCAGCCTTCTCGGGGTCAGGGTGAGTGCCTCGTCTCGAATCGATTC
GACATTCGTTTTGTCTTTCGTTTTCTTGAAGTATCGAAAACAGGACAGAA
CGGCTTTTTTTCTGTTTAAAACGTTTGTCTCGTCTACACGTTGCGGCACG
TGTCATGTGGACCATGCAGACCGTTGTGACTTACGCACGCACGTACGCTT
TAGAATATTGCCATCCCCCGTTGAGCAGAGATTTATATCGTTTGTCGTTT
TGCTGAGCGTGAAGCAGTCTGCAGATTTTTTTAGCTGTCCAGCTCTCACA
GGCCTGCCTTCAGGGCCAATACATTAAACAGTACGATTTTCAACACGGCT
TCTCTCTGGGGTTTCGCAGCCCTGCATTCAGGGTCGATTCGTTAGACTCA
CAGGCCTGCGTTCAGGGTCCATACATTAAACAGTACGCTTATCAAGAAGG
CTTCTCTCTCCAGCTCTCTCTCTCTCTCAGCAGTCTAGAATATTCGCAGC
GGCCTGAGCGATCTCGAAGCGTGTCTCTCGCTCGAACGCACATCGGGGTA
CACTCTCGTTTTGATCTGGATTCTCGACGAGACCTTTGGTTGCGTGGAAA
TACGCGTTGACTTTCTCTCTGCGCTTCATCCCTGCACCCGCGTCCCCGCG
TCCGATGCAAGGTTGTAAGAAGCAGTCAAAGCAGTCTGCAGATGCTCTTC
TTCGGAGATGAAAGGGCATTTTCAAAGTTCTTTCCCTGCACATCATATCA
GATTCTGCACAGCATATGTACTAGATTCTGCACCCACCCGCGTCGGATGC
ACTCCATCCAGTCATCGTTCTATGAAGCAATCCATTGGTGAAACTGCATT
TTCAAAGTTCGCTTTCAGGGCCTCAGGGCACCACACAGCGCAAAAGTCTG
CAGACAATTACTGTACGATTCTGGATGTATCTCATATCATTCCCATATCA
TAAACTTGATTCTCAACACTGCATGTTGAAAGTGCTTCGCTCTCAGCGCT
CGCAGCATTCCGCAGCAGCAGCAGCGTAAGAGTGTCTCTCGCTCGCACGC
ACGTCGGAGCGCGCTCTCATTCCGCCCTTGACCCTCCCCGAGACCTATCT
CGTTGCTTGGTAACACGCGTTACTTTCTCTCTGCGCTTTCTCTCTGCGCC
CGCGTCCTACATCATTCATGGCACCACGTCTGATTTTCGTGAAATTTTCG
TGTCCGAGAAGCAGCGTCAAACAATCTGCAGATCTCCCGTTCTGCCGAGC
CCTCTTCATTATACACGGCACAGCAATCCGTAGAAGAAGCATAAGCGTGT
CTCTCGCTCCCACGCACATCGGGGCACCACTCTCATTCCGCCCTAGACCC
TCCCCGAGACCTCTCGTTGCGCTCTCAGCACTCGATGACAGCATTCCGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCATACACGTTACTTTCTCTGCCCCT
TTGCACCCCCACCCGCGTCACACCAACTATTTTGTGCCATTTTTATGACA
CAGCATCGCAGTTAGCAATGATGTGCAGTTAGTTTATACAGCACAGCACA
GAGTAACATGGTTGCACGAAGCAATCAAAGCAGTCGTCTGCAGAACATAT
TCTTATTCGGAGATGAAAATGCATTTTCAAAGTACTTTCTCTGCACATCA
TATCAGATTTTGGACAGCGTACGTATCAGATTCCTCCCACCCGCGTCCGA
TGCACTCCAGTCATCGTTCTATAAAGCAGTCAAAGCAGTCTCTCCACATC
TTATCAGATTCTGCACATCGTATCAGCTTCTGCACACACCCGCGGCCGAT
GCTCGCCTGTCATCGTTGTATGAAGAAGCAGACAAAGCAGTCAAAGCAGA
CTGCAATCTGCAGATGCTCTTATACGGCGATATTGGTGAAACTGCATTTT
CAAAGTTCGCTTTCATTACACCACACAGCAAGAAAAGTTGTTTGAACAAG
GAGCAGTCAAAGCTCAAAAGCAGTCTGCAGATGATGCTCTTACTCGGAGA
TATAGATGAAACTGCATTTTCGAAGTTCGCTTTCAGGGCACCACACAGCG
CAAAAGTCTGCAGACATACCGTACACGATTCTGGACGTATCCCATACCAT
ACAGTATAAATCGACTCTGACTATGTCTTTCACCTCTGGCTGTCCGTATG
GGCAGATTTCCCTGCTTTTATTCGTAGATACAGATGAAACTGTATTTACA
AGGAAATGTGCTCTGGCTGCTCTGTCAGTTGACAGTTGAGGGCACCACAA
AGCGCAAAAAAGTCTTCAGACAGATTTCCCGGCTTTTATTCGGAGATACT
TCGAAGTATTGATGAAACTGAATCACCTTATCTCACCTCGGACTGTCCGT
CGGGGTCGTCAATGGAAAGACAGCAATCCATCATTCGTTTATATCGTACA
TATCATACGAAGTATGTATTTCCGGCAAAATCTGTTGAAGGGAGTCACTT
CTACCCACGCGAAGGGCACCCGAAATAACCTTTATGTCTCACTTCATGCC
GGCTACTACCCATAATGTTGTTTTGTTGGCAACGTCTGATTTTCGTGAAA
TTTTCGCGAGCGAGAAGCAGCTTGTCTCCAGAAGAAGCGTCAAGCAATCT
GCAGACCTCCCGTTCTGCCGAGCCCTCTTCATTACGTACGGCACAGCAGT
CCGCAGAAGAAGCATGAGCAAGCGTGTCTCTCGCTCCCACGCACATCGGG
GCACACTCTCATTCCGTCCGCCCTGGACCATCCCCGAGACCTCTCGTTGC
GCTCTCAGCACTCACTCTATATGTCAAGCAGGGTTATTTCAGTGTGAGGG
GGTTCCGTCTTCGCGACTCTTCGTCTTTCGTGCCGTGTCGTCGTCGATCG
TATTTTTGGTATATTTTCGTTCTTCACTGAACTGCCTCCATCTCAATGTT
TGAGCGTAACGTGCGGCGCCTCCACTGCTGTTCAGTCATGATGCTGCAAA
CGTCATGTTGTTTGTTGAGTTGTAGAGACACAAGTAGATGTACGATATTA
CTCTCTGTTTTCGTTGCTAATCCCGCTGGATCCTCGTCTACGGAGAGGCG
AACACATTGATTTCTTTGTAAGAAAACAAAAATGTTGACTTTTCAACATT
TTCGACCATACGTTTGTGCTTGCGAGGCGTTTTTTTTTCTTTTTCTGGCT
TTCAGCGGTTCGTGTCGTCTTCGGGCCTCCTGCCACTATCCGAGAGTCTG
TCGTAAACGCTTTCGCTCCCATTCCTTTTCACCGGTGTTTGCCGTTAGTG
GACGTTCAATTAGAGGGTCGTGTTGTCAAGTCAGGACTGTGTGCCAATTT
CCCGTTTTTCACGCTCACTTTTGCAGTGAAGGCGTTTTCTTCGCCTACGC
TTGTCCCTCTATATGACGGTGCGAACTTTTGCCGCCACTCCTTGTCACCC
ATACAACACATACGCCTCCCCCGAGATCGTCTCCCACCACTTTTTTGACG
CTACGTCGCAACAACCTCGGAGATGTCCCCCACATAATACCCAAGTATTG
GAATCGCTCCACTGAGCGTGCCGACGTATGCCGCAAAACCCTTGTACGTG
CGTGGGTTGAGAAATCATGTGTGATTCCCCCCATCAAGTAGGTCATGAAG
TAGAGACCCACCCACCCACGTTGTGTCTGCGAATGAGCTTACTACTGCAT
CAGAGAGTAGCCTGTTGTTTGGTGGGTATGGTAGTGTTTCCCGCAAAGTG
CGAACTATCAGAGCATGTCCACAATTTTCTGTGGAAACGCTGATTGCTGT
TTGTCAGTTACGAAGTATATCACAACTGCCGCTTCCGCTGCAACTGCTGC
TCCTTGCTGCGGCTGAAGGTGGGCGTTCCTGTACTACGACCATGGGAAAG
AGAACCTAGACGTGGTCGTGCTCGAGAACCAGGACACGCCCGCCATGAAC
CCGAAGACCACCCCCATCCTGCTCTTGGACCTGTGGGAGCACGCCTATTA
CCTAGACGTGAGACCCAAAAAAAAACGCGAATCGGCTAGACGGGCAAGCC
GTAACAGCACAGGAATATGACGACAGAATAAAGTGACGTACTGGAGGGGG
GGGTCACCGGTCGCTTGCTTGCCTCCGCCATCGGGACCCAAAAACAACAA
TCTGATTAGGCGCGGACACCTACCCATCTACCGCGGGTGTCCTATCGGAG
GCGGATCAAGGATGAGACGGGGTGGTGTGTGTGTGTGTGTGTGTGCGTTT
GCGTCTGTGTGTGTAGTTGGTGAAAGGTTAAGGGCTTGCGACGGCTAGTT
TTTGTTGGCCGGCTTTTTGCCGACTCGGGTGGTCCCACCTTGTGCCACCG
ATTTTTGGAAATACCGATGGCCGCGAGAATATATTTTTCGCTGTAGCCAA
ACGACGGGGGAAACGATAAGAAGAGTCTTTCGGATCAGTGGCCCGTCGTT
GCGAGGTACATTATTCAGCTGCTGTTGCCTCTGCTCTTTTGCCACCAATC
GAGGACGTGTGTTTCTTGGGCCGTGCCGGTGCTGCTACACCAACTACTAT
ACTATGCAAAGGAACGTCCGTCCGTGCCGGTAGGGGCTGGTCATTTTAAC
GGTTTCATCCCTGTCCACCCCCCCCGTCCCTTTCCTTCCTTCCCCTCGTA
TCTTTTTTTTTTTACTTCAGTTTTTTTTCTCCCACCTCACCCCCGACCCG
ACTCGCCCCGTGTGCGTGTGTTTTATTCACCTCCGACCCTACTGCAATTG
CTTCCACCTAACCCACTCACCCACCCACCCACCCACCCACCCGACCACCC
ACCCAACCACCCGACCACGAACCCTCTTCCCAGCACGAAAACCGCAAGGA
CGTGTACATCACGAACTTTTGGGCGTCCGTGGACTGGCCGAGAGTAGCGA
CGCTCTACGCCGAAGCTTCCGGCGAGGTAGTGCCAGAGGCCTTGCCTTCA
CCCGAGAGGTCAGATCAGAGGAAAAAGGAGGAATCCGTAAATGCAGCAAT
AGGTTATGAGCCGTGGCGTACCGGTATGTGTATGGTGGTATCTCGCAGGC
GATAGTGTAGGGCAGTGAGTTGTTGCCAAGTGTCGTTCCGGCGCACAGCA
GTGCAACCGCACACGCGCATCAAAATGGCCGCTGGGAATGAAAAAAGAAG
TGATGCTTGATGCCCGTCGACCCGATGAAGAACCTTGGAATGGTTAACAT
GGGTATACATTGAAACCTCAGCACTTTCGACGAGTCGCCCCCCCCTCGAT
GGCGCGCGCTTCCACTCTGAAGTCCAAATGGTGTTTTCCTGCTTGTCTCC
GCTGCGCACGCTCCCACCCCACCCTGCAGTAAATAACTCGCTGGTGCAAC
ACATACACCCACTGGCGCAACACATACACCCACTGGCGCACACAAACACA
TGACGCAACACATACACCCACTGGCGCCTCGCTGACACCTGTTTTTTTCT
TGTACCAAATTTTTCTTGCAAACGCGCGCTCGGGCAGGCGGGAAAAGGAT
GCTGTGGGGTTGACGCCTGTCGATGATGCGAGCAAGGCTTTGTTGGTTGA
GGAGTGAGGAGGGGGAGGAGGAGGAGGAGGATTGAGAGGGCCGGCCCGCT
GTGGAATGGACCGATACCGTTGTGATTCCGAAGCCAGAGGAGGTCGTGCG
TGCGTGCGTGCTTGCGCGAACAAAAACACCGTGAAAGTGTGTGTGAAGAC
AAGACACATACCGGGAGGGGTTGCGTTTTTGTGCCCGTTTGTTCGCTGAC
TGATGAGAATAGCGACCGTGCCATATCGACAAGACGACGGCGGGAGCGGG
CGAACATCATAGACAGACATTAATGAGCGGGTTTTTGCTCAGGACGGCTG
TTTGAGCCGGGAACACGTACGGTAGACAGCAGAGCGGAGTGCTGATGTTT
TTGGTTCACTGGCGAGGAACAATGGTGGGTGGAACAGAAATAGCTGGGTC
TGATGGTGGTAGGTGATGGTGGTGGTGGTGGTGGTTGGTCATGATCATGG
TGATCGCGATGGTGATGGTGATGAAGATGGTTACGGTGAGAGGGCTGGGG
TTTCTGCTTTACCAACAATGCACGTGCTGACCACCGCATCGGGAACCATG
TCAAAGGAATGTGTAACAGCGTGTAAAAGGTTCAGGCGCGAGAAAGGGGT
TACGCGTAGAGTACAGGAGGCGCGGATGGGAGTGGGGACTGAATGATGGA
AGAGAGGGAAGAACTGGTCTGGGCCCCCTTCGCCACTCGAGAGGATAGCA
GTAGCACGTGGACTACCGAATGTCCGAAGATTATGCACGATGGCTTGTCG
GGCTCTGTGTCTGAATATCTGTCTTCAGCGTTTGAGTACTACTTGGTGGT
GCCTGGTAGCGGTAGACGACTGGCGCGGCGGTATCTTTTATTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:71613..80605+

>mRNA_P-littoralis_Contig126.29.1 ID=mRNA_P-littoralis_Contig126.29.1|Name=mRNA_P-littoralis_Contig126.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=876bp|location=Sequence derived from alignment at P-littoralis_Contig126:71613..80605+ (Pylaiella littoralis U1_48)
ATGGGAAAGACAAGATCCACCCCACCGGCGCTGGTGGCTGGAGACGCCGT
CCGGCACGGCCTTGCAGCTCTACTAGCAGTAGTCTCGTTCGCGGCGTTGG
GATCGCATGCCCAGAACCTCCCGGTGCCTCCGCTGCCTTACTCGTACGGC
TCTTTGGTGCCTTTCATCAGCGAGCATGCCTTGAGGGTGCACCACCTGGG
GCACCACGCATCCTACACCTCGCAGCTGAACGCCGTGCTGGAGAAAATGC
GGTGGGATCCGGAGCTGAAGCACTTGGCCAAGATGGGCGTAGATGAGCTA
TTGCACAACCTGGGGAGCGTGCCCGAGGACTACCGCGGGGCCGCCCGTCG
TGCTGGAGGCGGGTTCGTGAATCACGATCTGTTCTGGAACGTGCTGTCGC
CGTGGGGGGGGCACCCACCAGGGCAAGAGTCGGAAACTATTCAGGAACGG
CACTTGGCGAGCGCAATCGACCGTTCGTTCGGCTCCTTCGCCGAGATGCA
GTACGCTTTCTCGAATGCGGCCTCAGCCTTCTCGGGGTCAGGGTGGGCGT
TCCTGTACTACGACCATGGGAAAGAGAACCTAGACGTGGTCGTGCTCGAG
AACCAGGACACGCCCGCCATGAACCCGAAGACCACCCCCATCCTGCTCTT
GGACCTGTGGGAGCACGCCTATTACCTAGACCACGAAAACCGCAAGGACG
TGTACATCACGAACTTTTGGGCGTCCGTGGACTGGCCGAGAGTAGCGACG
CTCTACGCCGAAGCTTCCGGCGAGGTAGTGCCAGAGGCCTTGCCTTCACC
CGAGAGGCGGGAAAAGGATGCTGTGGGGTTGACGCCTGTCGATGATGCGA
GCAAGGCTTTGTTGGTTGAGGAGTGA
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