mRNA_P-littoralis_Contig126.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.27.1
Unique NamemRNA_P-littoralis_Contig126.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Match: D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI)

HSP 1 Score: 402 bits (1032), Expect = 6.500e-131
Identity = 210/369 (56.91%), Postives = 252/369 (68.29%), Query Frame = 1
Query:  127 MATTSHPHTPPRQSKRKLNTALDNLGLGVDDEDFATPPGVTRKVRPRTPLGPQSPNAATAPVYV-GTARDLEQSEXXXXXXXXXXXPPASKAKRKKLRSDYRPVEPQYADMTAERLFTEGHVATGSFFLDHMGFAKQAARFNDVKIAGKAVWQKQPIGTSTLHNNIVVAEHFPSLAPLLVPLGELCKPRPSTTRRFKKQRVQQYTKSGRRHRDGKNAEWRMCITVHDPAAPSDFKQLEIGMAEASTAEGGKAVNPFRTKADGTPDSTLFDCSSASYHIMDTVGTGYNSHAHHQAIIAKKSILAKHGAATTFVIDMDPINPDTFIEDVDAIAMGTAGALGPNAGCESALVPPPTPEQIGVSCGSQQTKDW 1230
            M T+S+P +P R+ KRK +T LD  GLG DD+DF TPPG TRKVRP TP       AA +P     TA + ++ +            P     +KK+R DYRPV+PQY  MT ERLF+EGH+A GSF  +H  FA++AA FN VKI GK+VWQ+QP G STLHNN+ + + FPSLAP LVPL  LCK R ST R F KQR QQYT SGRRHRDGKN  WRMCITVH+P AP  FK+LE+G+A+A  A+G +A NP++ KADGTPD    DC++ SY IMD VGTG  SHAHHQAII K   L +HGA T FV+D DPI+P TF++DV+ IA GTA  +    G   A VPPPT  QIG SCGS QT DW
Sbjct:    1 MTTSSNPRSPLREPKRKRDTDLDFFGLGSDDDDFCTPPGATRKVRPTTPXXXXXXXAAASPCGPKSTASEGKKRKK-----------PTVSTGKKKIRHDYRPVDPQYERMTTERLFSEGHIAMGSFSYNHPQFAEEAAAFNGVKIDGKSVWQQQPCGPSTLHNNVTIIDRFPSLAPFLVPLDNLCKRRDSTVRLFVKQRAQQYTTSGRRHRDGKNGRWRMCITVHNPGAPLGFKRLEVGVADARVAKGDQATNPWQLKADGTPDMECIDCTTGSYQIMDEVGTGTASHAHHQAIIDKNP-LPQHGAPTMFVVDFDPISPHTFVDDVERIAEGTADKVKAGVGVP-AYVPPPTQAQIGRSCGSTQTSDW 356          
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Match: A0A6H5L1U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U0_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 3.170e-104
Identity = 164/270 (60.74%), Postives = 202/270 (74.81%), Query Frame = 1
Query:  421 DYRPVEPQYADMTAERLFTEGHVATGSFFLDHMGFAKQAARFNDVKIAGKAVWQKQPIGTSTLHNNIVVAEHFPSLAPLLVPLGELCKPRPSTTRRFKKQRVQQYTKSGRRHRDGKNAEWRMCITVHDPAAPSDFKQLEIGMAEASTAEGGKAVNPFRTKADGTPDSTLFDCSSASYHIMDTVGTGYNSHAHHQAIIAKKSILAKHGAATTFVIDMDPINPDTFIEDVDAIAMGTAGALGPNAGCESALVPPPTPEQIGVSCGSQQTKDW 1230
            D  P +P++A+MT ERLF+EG++ TG F  +H  F ++ A+FN VK+ GK  WQKQP G STLHNNIVV +HF SLAP L PL +LCKPRPST R F KQRVQQ  KSGRRH D KNA WR+C+TV + +AP   KQLEIGM +AS A+GG AVNP++ +ADG PD+  FDC + SYH+MDTV TG +SHAHHQA++ K+ IL KHGA TTFV+D+DP+N DTFI+DV  IA GTA A+    G ESA VPPPT  Q+G S  SQ+ +DW
Sbjct:   32 DLPPTDPRHANMTIERLFSEGYIVTGGFSYNHPQFEREMAKFNGVKVNGKPTWQKQPSGPSTLHNNIVVTDHFRSLAPFLGPLAKLCKPRPSTDRLFTKQRVQQSIKSGRRHHDAKNAPWRVCVTVANLSAPKGLKQLEIGMTDASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYHVMDTVATGLDSHAHHQALVNKELIL-KHGALTTFVLDLDPVNLDTFIDDVAEIARGTADAVIDGVG-ESAYVPPPTAAQMGTSSYSQKWRDW 299          
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Match: A0A6H5K3Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q8_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 2.000e-101
Identity = 178/333 (53.45%), Postives = 211/333 (63.36%), Query Frame = 1
Query:  127 MATTSHPHTPPRQSKRKLNTALDNLGLGVDDEDFATPPGVTRKVRPRTPLGPQSPNAATAPVYVGTARDLEQSEXXXXXXXXXXXPPASKAKRKKLRSDYRPVEPQYADMTAERLFTEGHVATGSFFLDHMGFAKQAARFNDVKIAGKAVWQKQPIGTSTLHNNIVVAEHFPSLAPLLVPLGELCKPRPSTTRRFKKQRVQQYTKSGRRHRDGKNAEWRMCITVHDPAAPSDFKQLEIGMAEASTAEGGKAVNPFRTKADGTPDSTLFDCSSASYHIMDTVGTGYNSHAHHQAIIAKKSILAKHGAATTFVIDMDPINPDTFIEDVDAIAMGT 1125
            MAT+S+P TP R+ KRK +T L+  GLG DD+DF TPPGVTR+V   TPL P+SPNAAT+                          P  K K KK R +Y+PV  QY  MT  RLF +GH+A  +F  +H  FAK+A  FN V IAGK VWQ+QP G STLHN + + +HF SLAP L PL +LCKPR ST R F KQR QQY  SGRRHRDGKN  WRMC+TVH+P AP  FK+LE+                   KADGTPD    DC + SYH MD VGTG  SHAHHQ II  K++L +HGA TTFV+D DPI+P+TFI+DV  IA GT
Sbjct:    1 MATSSNPRTPLREPKRKRDTGLEISGLGPDDDDFCTPPGVTRRVANTTPLTPRSPNAATSSCG-----------------------PKGK-KPKKSRHEYKPVPSQYEMMTTARLFGDGHIARSNFSYNHPQFAKEADTFNGVTIAGKQVWQRQPSGPSTLHNKVTIIDHFSSLAPFLGPLEKLCKPRDSTDRLFLKQRAQQYITSGRRHRDGKNGLWRMCVTVHNPGAPPGFKRLEL-------------------KADGTPDMECIDCPAGSYHTMDEVGTGTASHAHHQEII-DKNLLREHGAPTTFVLDFDPIDPNTFIDDVARIAEGT 289          
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Match: A0A6H5KU06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU06_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 2.780e-87
Identity = 158/283 (55.83%), Postives = 173/283 (61.13%), Query Frame = 1
Query:  382 PPASKAKRKKLRSDYRPVEPQYADMTAERLFTEGHVATGSFFLDHMGFAKQAARFNDVKIAGKAVWQKQPIGTSTLHNNIVVAEHFPSLAPLLVPLGELCKPRPSTTRRFKKQRVQQYTKSGRRHRDGKNAEWRMCITVHDPAAPSDFKQLEIGMAEASTAEGGKAVNPFRTKADGTPDSTLFDCSSASYHIMDTVGTGYNSHAHHQAIIAKKSILAKHGAATTFVIDMDPINPDTFIEDVDAIAMGTAGALGPNAGCESALVPPPTPEQIGVSCGSQQTKDW 1230
            P ASK KRKK+R DYR V P+Y +MT ERLF E HVATGSFF+DH  FA++  RFNDV I GK VWQK+P G STLHN+I +AEHFPSLAPLL+PL  LCKPRP T RRFKKQR QQYTKSGRRHRDGKNAEWRMCITVHDPAA S FK+LEIG+A+AS                                                                              ++DVDAIAMGTAGAL  NAGCESA VPPP PEQIGVS GSQQT DW
Sbjct:   20 PCASKEKRKKIRHDYRSVLPEYEEMTTERLFAECHVATGSFFIDHNRFAQEGERFNDVTIGGKPVWQKKPSGHSTLHNSIAIAEHFPSLAPLLIPLEALCKPRPGTARRFKKQRAQQYTKSGRRHRDGKNAEWRMCITVHDPAALSLFKELEIGVADASK-----------------------------------------------------------------------------VKDVDAIAMGTAGALEANAGCESAPVPPPYPEQIGVSSGSQQTSDW 225          
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Match: A0A6H5KI01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI01_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 2.260e-86
Identity = 161/350 (46.00%), Postives = 206/350 (58.86%), Query Frame = 1
Query:  178 LNTALDNLGLGVDDEDFATPPGVTRKVRPRTPLGPQSPNAATAPVYVGTARDLEQSEXXXXXXXXXXXPPASKAKR-KKLRSDYRPVEPQYADMTAERLFTEGHVATGSFFLDHMGFAKQAARFNDVKIAGKAVWQKQPIGTSTLHNNIVVAEHFPSLAPLLVPLGELCKPRPSTTRRFKKQRVQQYTKSGRRHRDGKNAEWRMCITVHDPAAPSDFKQLEIGMAEASTAEGGKAVNPFRTKADGTPDSTLFDCSSASYHIMDTVGTGYNSHAHHQAIIAKKSILAKHGAATTFVIDMDPINPDTFIEDVDAIAMGTAGALGPNAGCESALVPPPTPEQIGVSCGSQQTK 1224
            ++T   +  +    E F TPPGVTR+V   TPL P+SPNAA +       +   +             PPASK K+ KK R +Y+PV  QY  MT  RLF++GH+ATG+F  +H  FAK+A  FN V I GK VWQ+QP G STLHNN+ + +HF SLAP L PL +LCK R ST R F KQR QQY  SGRRHRDG+N  WRMC+TVH+P AP  FK+LE+G+A+A  A+GG A+NP++ KAD                                      ++L +HGA  TFV+D DPI+P+TFI+DV  IA GTA  +    G  SA V P T EQIG SC S++ +
Sbjct:    2 IHTLPTHASVRDPTEFFCTPPGVTRRVANATPLTPRSPNAAASSCGPKPLKSKGEKRKT---------PPASKGKKPKKARHEYKPVPSQYEVMTTARLFSDGHIATGNFSYNHPQFAKEADAFNGVTIGGKRVWQRQPSGPSTLHNNVTIIDHFSSLAPFLGPLEKLCKLRDSTDRLFLKQRAQQYITSGRRHRDGRNGLWRMCVTVHNPGAPPGFKRLEVGVADARVAKGGDAINPWQLKAD--------------------------------------NLLREHGAPATFVLDFDPIDPNTFIDDVARIAEGTADKVKAGVGV-SAYVCPRTEEQIGKSCASEKMR 303          
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Match: A0A6H5KRD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD3_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 7.200e-84
Identity = 153/282 (54.26%), Postives = 176/282 (62.41%), Query Frame = 1
Query:  385 PASKAKRKKLRSDYRPVEPQYADMTAERLFTEGHVATGSFFLDHMGFAKQAARFNDVKIAGKAVWQKQPIGTSTLHNNIVVAEHFPSLAPLLVPLGELCKPRPSTTRRFKKQRVQQYTKSGRRHRDGKNAEWRMCITVHDPAAPSDFKQLEIGMAEASTAEGGKAVNPFRTKADGTPDSTLFDCSSASYHIMDTVGTGYNSHAHHQAIIAKKSILAKHGAATTFVIDMDPINPDTFIEDVDAIAMGTAGALGPNAGCESALVPPPTPEQIGVSCGSQQTKDW 1230
            P +  KRKK+R DYR V P+Y DMT ERL  EGHVATGSFF+DH  FA++A + N V I GK                                 G++                   T+ G+    G    W MCIT+HDPAAPS+FKQLEIG  + S A+GG A+NPFR K DGT D+T FDC S SYHIMD VGTG + HAHHQA I K+ +L  HGAATTFV DM+PINPDTFI+DVD IA GTAGALGPNAGCESA VPPPT EQIGVS G +QT DW
Sbjct:   32 PCASKKRKKIRHDYRSVLPEYEDMTTERLVAEGHVATGSFFIDHNHFAQEAEKSNVVTIGGKR--------------------------------GDV-------------------TEMGKTRSGG----W-MCITIHDPAAPSNFKQLEIGEVDGSKAKGGHAINPFRAKPDGTTDATTFDCPSPSYHIMDRVGTGLHFHAHHQAKIDKR-LLDVHGAATTFVDDMNPINPDTFIQDVDVIARGTAGALGPNAGCESAPVPPPTDEQIGVSSGPEQTSDW 256          
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Match: A0A6H5K5U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U5_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 3.700e-82
Identity = 160/313 (51.12%), Postives = 193/313 (61.66%), Query Frame = 1
Query:  454 MTAERLFTEGHVATGSFFLDHMGFAKQAARFNDVKIAGKAVWQKQPIGTSTLHNNIVVAEHFPSLAPLLVPLGELCKPRPSTTRRFKKQRVQQYTKSGRRHRDGKNAEWRMCITVHDPAAPSDFKQLEIGMAEASTAEGGKAVNPFRTKADGTPDSTLFDCSSASYHIMDTVGTGYNSHAHHQAIIAKKSILAKHGAATTFVIDMDPINPDTFIEDVDAIAMGTAGALGPNAGCESALVPPPTPEQIGVSCGSQQTKDWTVAGAMAREEAAKEAXXXXXXXXXXXXXKDNLDDATKKRKLTVKARDDQSTGAR 1392
            MT ERLF+EGH+A GSF  +H  FA++AA FN VK+  K V Q QP   STLH +IV+A++F SL P    L  LCKPRP T R                HRDGKN  WRMCIT HDPAAP   K+ E+G+A+AS A+GG A+ P + K D  PDS  FDC++ SYHIMD VGTG NSHAHHQAII  KS+L+ H A TTFVID+DPI+P TF++DV+ IA GT+  +    G   A VP PT  QIG S         TVAGA ARE AA                K  L+DA K+R++T KAR DQ  G +
Sbjct:    1 MTTERLFSEGHIAIGSFAYNHPQFAEEAAAFNTVKVNRKPVRQTQPSSPSTLHKSIVIADYFSSLTPFSKQLEGLCKPRPKTNRL---------------HRDGKNGPWRMCITAHDPAAPPHTKRSEVGVADASNAKGGGALYPRQLKDDRKPDSVRFDCAAGSYHIMDKVGTGTNSHAHHQAII-DKSVLSTHEALTTFVIDLDPISPHTFVDDVENIAKGTSIEVKAGVGVP-AYVPTPTQAQIGRSRE-------TVAGAKAREAAASAIFDAAVADEEAAEAKQKLEDAAKRRRVTEKARADQVKGGK 289          
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Match: A0A6H5J6K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K4_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 5.030e-76
Identity = 121/184 (65.76%), Postives = 142/184 (77.17%), Query Frame = 1
Query:  454 MTAERLFTEGHVATGSFFLDHMGFAKQAARFNDVKIAGKAVWQKQPIGTSTLHNNIVVAEHFPSLAPLLVPLGE-LCKPRPSTTRRFKKQRVQQYTKSGRRHRDGKNAEWRMCITVHDPAAPSDFKQLEIGMAEASTAEGGKAVNPFRTKADGTPDSTLFDCSSASYHIMDTVGTGYNSHAHHQ 1002
            MT  R+F EGH+ATGSF  +H  F K+AA FND+K+ GK VWQKQP G STLHN++V+ + FPSLAP L P+ + LCKPRP+T R F KQR QQYT SGRRHRDGKN  WRMC+T+HDPAAP   KQLEIG+A+ S A+G  AVNPF+TKADGTPDS  FDC S SYH+MD V TG  SHA H+
Sbjct:    1 MTTARIFNEGHIATGSFSYNHPLFEKEAAAFNDIKVDGKPVWQKQPPGPSTLHNSVVINDRFPSLAPFLGPVEKKLCKPRPTTDRLFLKQRAQQYTTSGRRHRDGKNGPWRMCVTIHDPAAPPHAKQLEIGLADGSKAKGDGAVNPFQTKADGTPDSRRFDCPSGSYHLMDEVATGTVSHASHK 184          
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 2.440e-56
Identity = 107/158 (67.72%), Postives = 119/158 (75.32%), Query Frame = 1
Query: 1504 SRGAFNSGPGFNGVGKPFNSGVGAAARDFGDEGAGKKYYGLHLDIPTKYLAAQLPFLV*PDGGLKDPPLCVTKVNPHHPGLTKGQGIFGLDREGALIMGVHSGHRLNVCTRGGTVPVTAASPPYAVXXXXXXXLRAGKTVSNKTYHVRESARAKLNEE 1977
            S+ A NSGPG+  VGKPFNSG GA ARDF  EGA  K+YGLHLDIPT+ LAA+L  LV PDG LKD PLC T+VNP HPGLTKG+  FGLDREGALIMGVH+G  LN C  GGT+PVT A+PPY V       L AGK VSNKT++ RE  RAKLNEE
Sbjct:  379 SQKALNSGPGYGAVGKPFNSGNGATARDFSAEGANDKWYGLHLDIPTRDLAAKLRLLVQPDGSLKDAPLCDTEVNPDHPGLTKGRSTFGLDREGALIMGVHNGQSLNRCVGGGTIPVTTAAPPYRVPHFAIAPLLAGKIVSNKTHNKRERTRAKLNEE 536          
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Match: A0A6H5K7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M5_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.730e-41
Identity = 90/193 (46.63%), Postives = 110/193 (56.99%), Query Frame = 1
Query:  433 VEPQYADMTAERLFTEGHVATGSFFLDHMGFAKQAARFNDVKIAGKAVWQKQPIGTSTLHNNIVVAEHFPSLAPLLVPLGELCKPRPSTTRRFKKQRVQQYTKSGRRHRDGKNAEWRMCITVHDPAAPSDFKQLEIGMAEASTAEGGKAVNPFRTKADGTPDSTLFDCSSASYHIMDTVGTGYNSHAHHQAII 1011
            V P+Y +MT ERLF EGHVATGSFF+DH  FA++A +FNDV I GK                                         +T+ R++                  NAEWRM IT+HDPAAPS+F QLEIG+ + S A+GG A+NPFR K DG+ D+T FDC S SYHIMD VGTG++SHAHHQA I
Sbjct:   28 VLPEYEEMTTERLFAEGHVATGSFFIDHNRFAQEAEKFNDVTIGGKR----------------------------------------ATSPRWE------------------NAEWRMFITIHDPAAPSNFIQLEIGVVDGSKAKGGHAINPFRAKPDGSTDATTFDCPSPSYHIMDRVGTGHHSHAHHQAKI 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LFC5_ECTSI6.500e-13156.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1U0_9PHAE3.170e-10460.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3Q8_9PHAE2.000e-10153.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU06_9PHAE2.780e-8755.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI01_9PHAE2.260e-8646.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRD3_9PHAE7.200e-8454.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5U5_9PHAE3.700e-8251.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6K4_9PHAE5.030e-7665.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8P5_ECTSI2.440e-5667.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7M5_9PHAE1.730e-4146.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:64857..69092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1987
Hectar predicted targeting categoryother localisation
Exons7
Cds size1554
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.27.1prot_P-littoralis_Contig126.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 65259..68785 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789554.119245-UTR-P-littoralis_Contig126:64856..649711680789554.119245-UTR-P-littoralis_Contig126:64856..64971Pylaiella littoralis U1_48UTRP-littoralis_Contig126 64857..64971 +
1680789554.1307318-UTR-P-littoralis_Contig126:65247..652581680789554.1307318-UTR-P-littoralis_Contig126:65247..65258Pylaiella littoralis U1_48UTRP-littoralis_Contig126 65248..65258 +
1680789554.2023442-UTR-P-littoralis_Contig126:68785..690921680789554.2023442-UTR-P-littoralis_Contig126:68785..69092Pylaiella littoralis U1_48UTRP-littoralis_Contig126 68786..69092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789554.1392682-CDS-P-littoralis_Contig126:65258..653541680789554.1392682-CDS-P-littoralis_Contig126:65258..65354Pylaiella littoralis U1_48CDSP-littoralis_Contig126 65259..65354 +
1680789554.148212-CDS-P-littoralis_Contig126:65500..656591680789554.148212-CDS-P-littoralis_Contig126:65500..65659Pylaiella littoralis U1_48CDSP-littoralis_Contig126 65501..65659 +
1680789554.1611893-CDS-P-littoralis_Contig126:66583..674311680789554.1611893-CDS-P-littoralis_Contig126:66583..67431Pylaiella littoralis U1_48CDSP-littoralis_Contig126 66584..67431 +
1680789554.1725352-CDS-P-littoralis_Contig126:67894..680521680789554.1725352-CDS-P-littoralis_Contig126:67894..68052Pylaiella littoralis U1_48CDSP-littoralis_Contig126 67895..68052 +
1680789554.1809652-CDS-P-littoralis_Contig126:68214..683401680789554.1809652-CDS-P-littoralis_Contig126:68214..68340Pylaiella littoralis U1_48CDSP-littoralis_Contig126 68215..68340 +
1680789554.1898835-CDS-P-littoralis_Contig126:68618..687851680789554.1898835-CDS-P-littoralis_Contig126:68618..68785Pylaiella littoralis U1_48CDSP-littoralis_Contig126 68619..68785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.27.1

>prot_P-littoralis_Contig126.27.1 ID=prot_P-littoralis_Contig126.27.1|Name=mRNA_P-littoralis_Contig126.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=518bp
MATTSHPHTPPRQSKRKLNTALDNLGLGVDDEDFATPPGVTRKVRPRTPL
GPQSPNAATAPVYVGTARDLEQSEEEEEERQTSDQPPASKAKRKKLRSDY
RPVEPQYADMTAERLFTEGHVATGSFFLDHMGFAKQAARFNDVKIAGKAV
WQKQPIGTSTLHNNIVVAEHFPSLAPLLVPLGELCKPRPSTTRRFKKQRV
QQYTKSGRRHRDGKNAEWRMCITVHDPAAPSDFKQLEIGMAEASTAEGGK
AVNPFRTKADGTPDSTLFDCSSASYHIMDTVGTGYNSHAHHQAIIAKKSI
LAKHGAATTFVIDMDPINPDTFIEDVDAIAMGTAGALGPNAGCESALVPP
PTPEQIGVSCGSQQTKDWTVAGAMAREEAAKEAVAAAVTEEAAAAAKDNL
DDATKKRKLTVKARDDQSTGARTSTVRGQRVTVSEAAWEGRAAPTPLERE
AMDQSSADSSRGAFNSGPGFNGVGKPFNSGVGAAARDFGDEGAGKKYYGL
HLDIPTKYLAAQLPFLV*
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mRNA from alignment at P-littoralis_Contig126:64857..69092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.27.1 ID=mRNA_P-littoralis_Contig126.27.1|Name=mRNA_P-littoralis_Contig126.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4236bp|location=Sequence derived from alignment at P-littoralis_Contig126:64857..69092+ (Pylaiella littoralis U1_48)
CGGAGCCTTGACCAAGAGAGACCACCGCACACACACCGCACCCTCTCCTC GTTGTCTGCTCCGCCAGAGGATCCTTTCCAGGATCGGTTAGGAAGACTCA CAGCAAGATCAACAGGTTAGGATGTGAAAACAGCTCGTCCATAACATGAT ACACACCTTTTATTTGAATCGAGCATTCGATGCCACGGCGGATTGCCGTC ATCAGAGACCAGTCTGCCAACTCAACCGAGCGTAGTCTTTGATGCCGTAC TGCTCATCGATGTAATTCTGCGGCCGGTTCATAGTTTATCCTCTCCGACG CCTATTACATGGGTTTCTGCTGTACTTGGTACGGTCTTCGATCTCACTGA TCCCCATGCTTGCACATCTCCCGTATACGCTTACATAGCAGCAGGGATAG CCATGGCCACCACGAGCCATCCTCATACCCCACCAAGGCAGTCTAAGAGG AAGCTAAATACCGCACTGGACAACCTCGGGCTGGGCGTGGACGATGAGGT AAGACCATGAGTGTGGTGTGATAGACACGTTTAACTTTCGATTTCGGGTC ATACAATGTGAACATGAACCCACAGTCACACACGCACACACACACACCAT CATGCTCCCTCTCTTCACCCATGCATCCGCCCTTGGTCCCATAGGACTTT GCCACCCCCCCAGGGGTGACGCGGAAAGTACGACCCAGGACACCTCTCGG CCCGCAGTCTCCGAACGCAGCGACAGCACCGGTGTATGTTGGTACCGCAC GTGACCTCGAGCAGTCCGAAGAGGAGGAGGAGGAGCGACAAACATCCGAC CAGGCGAGCAGTGACATACGTGCGAGAGGCGTATTATGGAGTGCTTCGTG CCCAGTTTGCTCGATGCTCAGGAATTGGGTAGAGAGGCCGTGACAGGCCG TCCTTTGTTGTCGTATTATCGAGCTGGTCGACAATCGAGTGGGAGACGGC AGGCCGCTCCCCATACCATATGCTTCATCAATCGTACGCAGAACTCCTAC AACAATACGCATCTACGTAAAGTCTCCTACCATATATAAATCCATCTAGA TCTCCGAAGCTAGTCTATGTAACTTCATCCCTACTGCCAGGTAGATCGAT CAGCGTACCCCTTGGACCTCGATGGGAAATTGTTTAGGCTGTTCGTTAGG TTGTTTTATCACATCATAATATCCTCACGTACTAATAAGCTACAAGCTTC AGTTCTGATATTCCGGGTGGGAGACAGACAGGAACAAGCCAGGTTACCAC ACCTCGCGATCTCGAGGGGCCGGGCAATACGTGTTAGAGAGAGCGGGGAT AGAAACAAGTGGTCCTTTGTGTTTACACTTCTATCGTGCTATACATGCGA ATTAGCAACGATCCCCTCCCCCCCCGAATCCTACAACACGCCTCGGATTG GGTTTCCATGTCGACGCTCCTCGAAATGAGATCGCCGCCACCCCCTCCCC CCCCTTCGCCACAACTCTCCCTTCCCTCTCCATTTTATCTAGCCTCCCGC TTCACCAATGGTATGTTATATGTAAAGTGTACGTTATATGTAAGTGTCAT TAGTGGGGTTGAATAGAACTACCGAACACGAAAACAACAGTTTGTTCCGG TTATACGTTCGATCTAACAGCAATACGTCGATGTTGTCGTACTGGTTAAA GTCGTTTGGTTTACGCGTCAAGATCATTCATGTCTGTCCCACGTGTTTCA TGTTGCCACCTCTTTGTAACACAACAGCCCCCCGCGTCGAAGGCGAAGAG GAAAAAGCTTCGGTCAGACTACCGGCCCGTGGAGCCTCAGTACGCGGACA TGACGGCGGAGCGCCTCTTCACCGAGGGCCACGTTGCTACCGGCAGCTTC TTCCTGGACCACATGGGTTTCGCGAAACAGGCCGCGAGATTCAACGACGT CAAGATAGCCGGGAAAGCGGTGTGGCAAAAACAGCCCATCGGTACTTCTA CGCTGCACAACAACATCGTTGTCGCCGAACATTTCCCTTCGCTGGCCCCG TTGTTGGTGCCGCTGGGAGAGTTGTGCAAGCCTAGGCCAAGCACCACTCG CCGTTTCAAGAAACAGCGAGTACAACAGTACACAAAGTCCGGCCGGCGAC ACCGCGACGGCAAGAACGCGGAGTGGAGGATGTGTATCACCGTTCACGAC CCGGCTGCGCCGTCGGACTTCAAGCAGTTGGAGATCGGAATGGCGGAGGC CAGCACGGCCGAGGGTGGCAAGGCCGTCAACCCGTTCCGGACCAAAGCTG ACGGTACACCGGACTCCACGCTCTTCGACTGTTCGTCGGCATCCTACCAC ATCATGGACACCGTGGGTACCGGCTACAACTCTCACGCCCACCACCAGGC GATCATAGCGAAAAAGAGCATCCTTGCTAAACACGGAGCGGCCACCACGT TCGTCATTGACATGGACCCGATCAACCCTGACACGTTCATCGAAGACGTC GACGCGATCGCGATGGGTACTGCGGGCGCGCTCGGGCCGAACGCAGGCTG CGAGTCGGCACTCGTCCCTCCCCCGACCCCAGAGCAGATCGGCGTGTCCT GTGGGTCGCAGCAGACAAAAGACTGGAACAAGCTCGAGAAGGAGCACAAC CTCGAGGCCTACACGGAGGATCGGCGACAGGGGGGTGAGTGAAAACATTG GAAAAACTCCAAGCCCGTGGTGTTCATTGGGTTGATTAGAGTACTGTTTT ATTTTTGGTGTTCAGTCTTGTTTCTATGTAGTCGACGGTGCGAGGTCGAG ACGTTTACTTACATCACTGGGAACCGTTCACCTTTGGCCGTGGCTTCATG CTGTAAAAACCGGCCTATTCAAGTGTGTTGTTGTTGTTGTTATTGTTGTT GTTGTTGTTGTTGTCGTCGCTTTGTAGTCTAGATATTTCCCGTTCGTCAC ATATACACCAGCGCCTTTTCTGGTGTGCCCCTCAATGATTGTGGTCCTCG GAATTACCGCCCCCTTTTTGGTCGAACTCTTGCGGTATGTGCGTGCGATC ATAGGCAACAACAACAACTTCGGCCAGACGAAAGGCGAGACCGTGGCGGG CGCGATGGCGCGAGAGGAGGCCGCGAAGGAAGCCGTGGCCGCCGCCGTCA CCGAGGAAGCAGCAGCAGCGGCGAAGGATAACCTGGACGACGCGACCAAG AAGCGCAAGCTCACCGTGAAGGCGAGGGACGACCAATCCACGGGCGGTAA GCCGGGGGGATATCGACGAGCACGTCGTCGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGT GTGAGTTTACAACGACTAGCACGCATTTTCCCCATGATCGACTTTCTGGT TTTTGCAGCGCGGACGTCAACCGTGCGCGGCCAGAGGGTCACGGTGTCCG AGGCCGCGTGGGAGGGAAGAGCTGCCCCGACACCCCTCGAGAGAGAGGCC ATGGACCAGAGCTCAGCCGACAGCTCTCGCGGAGGCAAGCTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGCCATGGGCTCTCCTTC CTTCATAACGCCTACATGAATCGAATACATACGTAAATATACCGTAACCT GTTTACAGCATACGATGCCACACAAAACGTGCATTTGACCCGTTGAGCGA AACTGCGCTTGACGCGGACAACAAGTTGGACCCTTGGCAGCTCTGTTGCA TGTGGATCACCAGATATTACGTGATTCCAGACCTCACATCGGTTACCCGT GCTGTTCATCAGCTTTCAACAGTGGTCCCGGCTTCAACGGAGTCGGCAAA CCGTTCAACAGCGGCGTCGGGGCCGCCGCGAGGGACTTCGGCGACGAGGG TGCGGGAAAAAAATACTACGGACTCCACCTCGACATCCCAACGAAATATC TCGCCGCGCAACTTCCTTTCCTGGTGTAGCCGGATGGGGGCCTGAAGGAC CCCCCCCTCTGTGTCACTAAGGTAAACCCACATCACCCTGGCCTCACCAA GGGCCAAGGGATATTTGGCCTCGACCGGGAGGGTGCGCTCATCATGGGCG TGCACAGCGGCCACAGACTCAACGTGTGCACCAGAGGGGGAACCGTCCCT GTGACCGCGGCATCGCCGCCCTACGCCGTGCCACCCTTCGCCGTCGCTCC TCTGCGCGCGGGCAAGACCGTGTCGAACAAGACATATCATGTGAGGGAGA GTGCGCGCGCGAAGCTGAACGAGGAGTAAACGGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:64857..69092+

>mRNA_P-littoralis_Contig126.27.1 ID=mRNA_P-littoralis_Contig126.27.1|Name=mRNA_P-littoralis_Contig126.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1554bp|location=Sequence derived from alignment at P-littoralis_Contig126:64857..69092+ (Pylaiella littoralis U1_48)
ATGGCCACCACGAGCCATCCTCATACCCCACCAAGGCAGTCTAAGAGGAA
GCTAAATACCGCACTGGACAACCTCGGGCTGGGCGTGGACGATGAGGACT
TTGCCACCCCCCCAGGGGTGACGCGGAAAGTACGACCCAGGACACCTCTC
GGCCCGCAGTCTCCGAACGCAGCGACAGCACCGGTGTATGTTGGTACCGC
ACGTGACCTCGAGCAGTCCGAAGAGGAGGAGGAGGAGCGACAAACATCCG
ACCAGCCCCCCGCGTCGAAGGCGAAGAGGAAAAAGCTTCGGTCAGACTAC
CGGCCCGTGGAGCCTCAGTACGCGGACATGACGGCGGAGCGCCTCTTCAC
CGAGGGCCACGTTGCTACCGGCAGCTTCTTCCTGGACCACATGGGTTTCG
CGAAACAGGCCGCGAGATTCAACGACGTCAAGATAGCCGGGAAAGCGGTG
TGGCAAAAACAGCCCATCGGTACTTCTACGCTGCACAACAACATCGTTGT
CGCCGAACATTTCCCTTCGCTGGCCCCGTTGTTGGTGCCGCTGGGAGAGT
TGTGCAAGCCTAGGCCAAGCACCACTCGCCGTTTCAAGAAACAGCGAGTA
CAACAGTACACAAAGTCCGGCCGGCGACACCGCGACGGCAAGAACGCGGA
GTGGAGGATGTGTATCACCGTTCACGACCCGGCTGCGCCGTCGGACTTCA
AGCAGTTGGAGATCGGAATGGCGGAGGCCAGCACGGCCGAGGGTGGCAAG
GCCGTCAACCCGTTCCGGACCAAAGCTGACGGTACACCGGACTCCACGCT
CTTCGACTGTTCGTCGGCATCCTACCACATCATGGACACCGTGGGTACCG
GCTACAACTCTCACGCCCACCACCAGGCGATCATAGCGAAAAAGAGCATC
CTTGCTAAACACGGAGCGGCCACCACGTTCGTCATTGACATGGACCCGAT
CAACCCTGACACGTTCATCGAAGACGTCGACGCGATCGCGATGGGTACTG
CGGGCGCGCTCGGGCCGAACGCAGGCTGCGAGTCGGCACTCGTCCCTCCC
CCGACCCCAGAGCAGATCGGCGTGTCCTGTGGGTCGCAGCAGACAAAAGA
CTGGACCGTGGCGGGCGCGATGGCGCGAGAGGAGGCCGCGAAGGAAGCCG
TGGCCGCCGCCGTCACCGAGGAAGCAGCAGCAGCGGCGAAGGATAACCTG
GACGACGCGACCAAGAAGCGCAAGCTCACCGTGAAGGCGAGGGACGACCA
ATCCACGGGCGCGCGGACGTCAACCGTGCGCGGCCAGAGGGTCACGGTGT
CCGAGGCCGCGTGGGAGGGAAGAGCTGCCCCGACACCCCTCGAGAGAGAG
GCCATGGACCAGAGCTCAGCCGACAGCTCTCGCGGAGCTTTCAACAGTGG
TCCCGGCTTCAACGGAGTCGGCAAACCGTTCAACAGCGGCGTCGGGGCCG
CCGCGAGGGACTTCGGCGACGAGGGTGCGGGAAAAAAATACTACGGACTC
CACCTCGACATCCCAACGAAATATCTCGCCGCGCAACTTCCTTTCCTGGT
GTAG
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