mRNA_P-littoralis_Contig126.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.26.1
Unique NamemRNA_P-littoralis_Contig126.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig126.26.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.110e-47
Identity = 81/93 (87.10%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:   85 LKDRQNRDGVFSVLCQYIRRQLGHIRLQKAEGIQLEWAEHCMNELRLRIDGEPLLSPDYSMTTGYKSWYNDLDGAEIPEEKDNGIGEGELQAL 363
            LK+RQNRDGV SVLCQYIRRQLG IR +KA GIQLEWAEHC+NE+RLRIDGEPLLSPD+S TTGYKSWYND+DGAEIPEEKDNG+GEGELQAL
Sbjct:  877 LKNRQNRDGVCSVLCQYIRRQLGRIRQKKAAGIQLEWAEHCINEMRLRIDGEPLLSPDFSTTTGYKSWYNDVDGAEIPEEKDNGLGEGELQAL 969
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BLAST of mRNA_P-littoralis_Contig126.26.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 4.370e-47
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   85 LKDRQNRDGVFSVLCQYIRRQLGHIRLQKAEGIQLEWAEHCMNELRLRIDGEPLLSPDYSMTTGYKSWYNDLDGAEIPEEKDNGIGEGELQAL 363
            LK+RQNRDGV SVLCQYI RQLG IR +KA GIQLEWAEHC+NE+RLRIDGEPLLSPD+S TTGYKSWYND+DGAEIPEEKDNG+GEGELQAL
Sbjct:  383 LKNRQNRDGVCSVLCQYIHRQLGRIRQKKAAGIQLEWAEHCINEMRLRIDGEPLLSPDFSTTTGYKSWYNDVDGAEIPEEKDNGLGEGELQAL 475
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BLAST of mRNA_P-littoralis_Contig126.26.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.080e-21
Identity = 54/99 (54.55%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:   73 YPGT--LKDRQNRDGVFSVLCQYIRRQLGHIRLQKAEGIQLEWAEHCMNELRLRIDGEPLLSPDYSMTTGYKSWYNDLDGAEIPEEKDNGIGEGELQAL 363
            +PG   LK+RQ+ DGVFSVLCQYIR +   IR +K+    +   E C+  LRL IDGEP+LS D+  T  +KSW+ND D   I +E  NGIGEGELQAL
Sbjct:  154 HPGQDFLKNRQHHDGVFSVLCQYIRGKFESIRAKKSNNTAMTPWEDCLGNLRLLIDGEPILSQDFLETLHFKSWHNDKDSLIIGDEG-NGIGEGELQAL 251
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BLAST of mRNA_P-littoralis_Contig126.26.1 vs. uniprot
Match: A0A6H5L7Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.610e-18
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:   85 LKDRQNRDGVFSVLCQYIRRQLGHIRLQKAEGIQLEWAEHCMNELRLRIDGEPLLSPDYSMTTGYKSWYNDLDGAEIPEEKDNGIGEG 348
            L+DRQ+RDGVFSVLC++IR Q   IR + ++G+ LE+ E C+  L+L +DGE +LS D S T  Y SWYN  +  +I   + NGIGEG
Sbjct:  665 LEDRQHRDGVFSVLCKFIRHQYDTIRKKTSDGVGLEYGESCLQRLQLEVDGESVLSSDCSRTESYLSWYNTKE-LDIVLLEANGIGEG 751
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BLAST of mRNA_P-littoralis_Contig126.26.1 vs. uniprot
Match: A0A6H5KAG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.950e-7
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 WPNPGGGDCGPHTITDLCRIKSGVYPGTLK 90
            WP+PGGGDCGPHTITDL RI+SG+ PGT +
Sbjct:   13 WPHPGGGDCGPHTITDLRRIESGIPPGTAR 42
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BLAST of mRNA_P-littoralis_Contig126.26.1 vs. uniprot
Match: A0A6H5JV03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV03_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.320e-6
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:    1 WPNPGGGDCGPHTITDLCRIKSGVYPGTLK 90
            WPNPGGGDCG HTITDL RIKSGV  GT +
Sbjct:   13 WPNPGGGDCGSHTITDLRRIKSGVPAGTAR 42
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KQE5_9PHAE1.110e-4787.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA3_9PHAE4.370e-4786.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ3_9PHAE1.080e-2154.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Q2_9PHAE2.610e-1851.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAG3_9PHAE1.950e-776.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV03_9PHAE1.320e-680.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:63226..63795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size365
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789554.0484018-CDS-P-littoralis_Contig126:63226..633021680789554.0484018-CDS-P-littoralis_Contig126:63226..63302Pylaiella littoralis U1_48CDSP-littoralis_Contig126 63227..63302 -
1680789554.063168-CDS-P-littoralis_Contig126:63508..637951680789554.063168-CDS-P-littoralis_Contig126:63508..63795Pylaiella littoralis U1_48CDSP-littoralis_Contig126 63509..63795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.26.1prot_P-littoralis_Contig126.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 63227..63795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.26.1

>prot_P-littoralis_Contig126.26.1 ID=prot_P-littoralis_Contig126.26.1|Name=mRNA_P-littoralis_Contig126.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
WPNPGGGDCGPHTITDLCRIKSGVYPGTLKDRQNRDGVFSVLCQYIRRQL
GHIRLQKAEGIQLEWAEHCMNELRLRIDGEPLLSPDYSMTTGYKSWYNDL
DGAEIPEEKDNGIGEGELQAL
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mRNA from alignment at P-littoralis_Contig126:63226..63795-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.26.1 ID=mRNA_P-littoralis_Contig126.26.1|Name=mRNA_P-littoralis_Contig126.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig126:63226..63795- (Pylaiella littoralis U1_48)
TGGCCAAACCCTGGCGGGGGAGATTGTGGTCCGCACACCATCACCGATCT
TTGTCGAATCAAGTCTGGGGTTTACCCCGGAACCCTGAAGGATCGGCAAA
ACCGCGATGGCGTGTTTTCGGTGTTGTGCCAGTATATTCGTCGACAACTC
GGCCACATTCGTCTACAAAAGGCAGAGGGCATTCAGTTGGAGTGGGCAGA
GCATTGCATGAATGAACTACGTCTCCGGATCGACGGAGAGCCCTTGCTGT
CCCCGGACTACTCGATGACAACCGGGTACAAATCATGGTAAGCGTGTTCG
TGAGCTCAAACCCTGGTGCGGGCCGGCAGCCTTGGGGCTGTTTAGCTGTG
TACCTGCTTGCATGATAGAGGAGAGAGGGAAGAGGAGAGGTATGTAGCCC
GTGCTATCATCTCAAGCCTCTCACCACACCTTAACACCCCAACTGCGCCC
TATTAACTACGACATTCGACAATCTACCTGCACGCACGAACAGGTACAAC
GACCTGGACGGTGCTGAAATTCCGGAAGAAAAGGACAACGGTATAGGGGA
AGGTGAACTCCAGGCACTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:63226..63795-

>mRNA_P-littoralis_Contig126.26.1 ID=mRNA_P-littoralis_Contig126.26.1|Name=mRNA_P-littoralis_Contig126.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig126:63226..63795- (Pylaiella littoralis U1_48)
TGGCCAAACCCTGGCGGGGGAGATTGTGGTCCGCACACCATCACCGATCT
TTGTCGAATCAAGTCTGGGGTTTACCCCGGAACCCTGAAGGATCGGCAAA
ACCGCGATGGCGTGTTTTCGGTGTTGTGCCAGTATATTCGTCGACAACTC
GGCCACATTCGTCTACAAAAGGCAGAGGGCATTCAGTTGGAGTGGGCAGA
GCATTGCATGAATGAACTACGTCTCCGGATCGACGGAGAGCCCTTGCTGT
CCCCGGACTACTCGATGACAACCGGGTACAAATCATGGTACAACGACCTG
GACGGTGCTGAAATTCCGGAAGAAAAGGACAACGGTATAGGGGAAGGTGA
ACTCCAGGCACTC
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