mRNA_P-littoralis_Contig1258.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1258.7.1
Unique NamemRNA_P-littoralis_Contig1258.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1258.7.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 8.750e-17
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:   25 VVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQHFSGSAPAQNIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVI 282
            VV++S+ E++  A      KL+ AHNMF +AVVW+P+ +TL+HFSG+A +  I  DTGTL  SSVA  IA GEVSP+TG  W P +
Sbjct:  314 VVQDSKEEETPAALEEAEEKLRRAHNMFHNAVVWDPLKNTLRHFSGAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVWAPPL 399
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BLAST of mRNA_P-littoralis_Contig1258.7.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.620e-14
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   25 VVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQHFSGSAPAQNIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVI 282
            VV++S+ E++  A      KL+ + NMF +AVVW+P+ +TL+HFS +A +  I  DTGTL  SSVA  IA GEVSP+TG  W P +
Sbjct:   91 VVQDSKEEETPAALEEAEEKLRRSQNMFHNAVVWDPLKNTLRHFSCAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVWAPPL 176
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BLAST of mRNA_P-littoralis_Contig1258.7.1 vs. uniprot
Match: D7G3Y3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y3_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.210e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:  103 MFRHAVVWNPIADTLQHFSGSAPAQNIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVI 282
            MF +AVVW+P+ +TL+HFSG+A +  I  DTGTL  SSVA  IA GEVSP+TG  W P +
Sbjct:    1 MFHNAVVWDPLKNTLRHFSGAASSLAITNDTGTLEFSSVASGIASGEVSPTTGQVWAPPL 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1258.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE8.750e-1752.33Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FQM4_ECTSI3.620e-1448.84Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3Y3_ECTSI4.210e-1258.33Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1258contigP-littoralis_Contig1258:35695..36615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size345
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.63e-10
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size345
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.39508-CDS-P-littoralis_Contig1258:35694..358901680789553.39508-CDS-P-littoralis_Contig1258:35694..35890Pylaiella littoralis U1_48CDSP-littoralis_Contig1258 35695..35890 +
1680789553.4053962-CDS-P-littoralis_Contig1258:36466..366151680789553.4053962-CDS-P-littoralis_Contig1258:36466..36615Pylaiella littoralis U1_48CDSP-littoralis_Contig1258 36467..36615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1258.7.1prot_P-littoralis_Contig1258.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1258 35695..36615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1258.7.1

>prot_P-littoralis_Contig1258.7.1 ID=prot_P-littoralis_Contig1258.7.1|Name=mRNA_P-littoralis_Contig1258.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
IQRALCEGVVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQ
HFSGSAPAQNIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVIAGAPPA
ASTPTAEPSRGTPTL
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mRNA from alignment at P-littoralis_Contig1258:35695..36615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1258.7.1 ID=mRNA_P-littoralis_Contig1258.7.1|Name=mRNA_P-littoralis_Contig1258.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=921bp|location=Sequence derived from alignment at P-littoralis_Contig1258:35695..36615+ (Pylaiella littoralis U1_48)
ATCCAGAGAGCACTGTGCGAAGGCGTTGTCCGAGAGTCGAGATTGGAGGA
CAGTCAGGAAGCGAGGTTGAATGTGATGAGGAAGTTACAAACAGCTCACA
ACATGTTTCGACACGCCGTCGTGTGGAACCCGATTGCGGATACTCTACAG
CACTTCTCCGGGTCGGCTCCGGCGCAAAACATCGCCACAGACACAGGTCA
GGATGACTGCAACAAACCTCGCTGCTGCTTACATTGTTACCTACAGCGGT
CTACCTCCGTAACGAATAATATCGCACGACATATACACCCCTATGTACGC
CGTCACCAACATGAACCGTTGTCATGTCGTAGGGATGACATCGCTTTGAC
CGCCATATGCCGTATAGGACAACGAAAGAAAGTATCAAAACAGTGGCTCT
TGCATGGAAGCAATGGAGCACGTCGCCAATAATCATGTCGACGACATCAC
CGGCGCTAAGAACGCGCTTTGCAAGTTCAGGATTGGCGACGTAAAAATTA
GCTCGTAGGTCTCAAGCTAATCACTGTAGGAGGTGGCGAACGACAAAAAT
GCCACTCTCATGACGGCATTTAGGTGCAGAAGGGTAAGTGGGTCACTTGG
GCAATCGTTTCTTTCGACCGCCTGTAGCCCCCCCATCGCGTTTTGTTCGG
GTACAAGGAATCAGATGTTGCCAAGTAAAACGTCACGTATCGAGCATCAT
GCAAGTTTGAAGTACGATAACGCAGCCCGATTGCTTCTTTTACATGTCAC
CTTTCGCAATTGTTTGGACCAGGAACACTGGCGATGTCATCGGTAGCCCG
CAGAATAGCTTGGGGCGAGGTTTCTCCAAGTACTGGACTAGAGTGGGTAC
CGGTGATAGCGGGTGCACCACCGGCGGCTTCAACGCCAACCGCAGAACCC
AGTCGTGGCACCCCCACGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1258:35695..36615+

>mRNA_P-littoralis_Contig1258.7.1 ID=mRNA_P-littoralis_Contig1258.7.1|Name=mRNA_P-littoralis_Contig1258.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig1258:35695..36615+ (Pylaiella littoralis U1_48)
ATCCAGAGAGCACTGTGCGAAGGCGTTGTCCGAGAGTCGAGATTGGAGGA
CAGTCAGGAAGCGAGGTTGAATGTGATGAGGAAGTTACAAACAGCTCACA
ACATGTTTCGACACGCCGTCGTGTGGAACCCGATTGCGGATACTCTACAG
CACTTCTCCGGGTCGGCTCCGGCGCAAAACATCGCCACAGACACAGGAAC
ACTGGCGATGTCATCGGTAGCCCGCAGAATAGCTTGGGGCGAGGTTTCTC
CAAGTACTGGACTAGAGTGGGTACCGGTGATAGCGGGTGCACCACCGGCG
GCTTCAACGCCAACCGCAGAACCCAGTCGTGGCACCCCCACGTTG
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