mRNA_P-littoralis_Contig1258.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1258.6.1
Unique NamemRNA_P-littoralis_Contig1258.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1258.6.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.600e-13
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    4 VYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLP 195
            VYVYANDSDLIVLGVR+LL++    +   L+GV I +  IF+PPE AF  +   +AFLR LHGLP
Sbjct:  175 VYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIFQPPEWAFAIDAEGYAFLRQLHGLP 239
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BLAST of mRNA_P-littoralis_Contig1258.6.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.200e-9
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGL 192
            NVYVYANDSDL VLGVR LL E  +  R +L G  +    +F+P   +F R+  AH +LR LHG+
Sbjct:  380 NVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGI 444
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BLAST of mRNA_P-littoralis_Contig1258.6.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 2.230e-9
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGL 192
            NVYVYANDSDL VLGVR LL E  +  R +L G  +    +F+P   +F R+  AH +LR LHG+
Sbjct:  135 NVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGI 199
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BLAST of mRNA_P-littoralis_Contig1258.6.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.440e-8
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGL 192
            NVYVYANDSDL VLGVR  L E  +  R +L G  +    +F+P   +F R+  AH +LR LHG+
Sbjct:  108 NVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLFQPTAWSFLRSGDAHGWLRQLHGI 172
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BLAST of mRNA_P-littoralis_Contig1258.6.1 vs. uniprot
Match: A0A6H5KRU2_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 2.270e-5
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    4 VYVYANDSDLIVLGVRALLYEASERNRQLSGVYINTDFIFKPPEMAFRRNTT-AHAFLRLLHGL 192
            V V  NDSDL+V+GVR+LL+E      +L G     + I +P   A R  TT  H  LRLLHG+
Sbjct:  179 VLVRGNDSDLMVIGVRSLLWEVVSEEGRLFGNIFTHEGITRPQMHALRAGTTHGHESLRLLHGV 242
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1258.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE2.600e-1358.46Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KVY6_9PHAE1.200e-950.77Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G0K2_ECTSI2.230e-950.77Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
D7G4G5_ECTSI1.440e-849.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRU2_9PHAE2.270e-545.31Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1258contigP-littoralis_Contig1258:35293..35488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size196
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.65e-10
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size195
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.3542488-CDS-P-littoralis_Contig1258:35292..354871680789553.3542488-CDS-P-littoralis_Contig1258:35292..35487Pylaiella littoralis U1_48CDSP-littoralis_Contig1258 35293..35487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1258.6.1prot_P-littoralis_Contig1258.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1258 35293..35487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1258.6.1

>prot_P-littoralis_Contig1258.6.1 ID=prot_P-littoralis_Contig1258.6.1|Name=mRNA_P-littoralis_Contig1258.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
NVYVYANDSDLIVLGVRALLYEASERNRQLSGVYINTDFIFKPPEMAFRR
NTTAHAFLRLLHGLP
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mRNA from alignment at P-littoralis_Contig1258:35293..35488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1258.6.1 ID=mRNA_P-littoralis_Contig1258.6.1|Name=mRNA_P-littoralis_Contig1258.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=196bp|location=Sequence derived from alignment at P-littoralis_Contig1258:35293..35488+ (Pylaiella littoralis U1_48)
AACGTGTATGTTTACGCGAACGACTCTGATCTCATCGTCTTGGGCGTAAG
GGCGTTGCTATATGAAGCGTCCGAGCGCAACCGCCAGCTGAGCGGAGTGT
ACATCAACACTGACTTCATTTTCAAACCTCCAGAGATGGCATTCAGAAGA
AACACTACAGCTCATGCGTTCCTTCGCCTGCTGCATGGCCTGCCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1258:35293..35488+

>mRNA_P-littoralis_Contig1258.6.1 ID=mRNA_P-littoralis_Contig1258.6.1|Name=mRNA_P-littoralis_Contig1258.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig1258:35293..35488+ (Pylaiella littoralis U1_48)
AACGTGTATGTTTACGCGAACGACTCTGATCTCATCGTCTTGGGCGTAAG
GGCGTTGCTATATGAAGCGTCCGAGCGCAACCGCCAGCTGAGCGGAGTGT
ACATCAACACTGACTTCATTTTCAAACCTCCAGAGATGGCATTCAGAAGA
AACACTACAGCTCATGCGTTCCTTCGCCTGCTGCATGGCCTGCCT
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