mRNA_P-littoralis_Contig1258.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1258.12.1
Unique NamemRNA_P-littoralis_Contig1258.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1258.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1258contigP-littoralis_Contig1258:46967..47301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size259
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.1779335-CDS-P-littoralis_Contig1258:46966..470101680789553.1779335-CDS-P-littoralis_Contig1258:46966..47010Pylaiella littoralis U1_48CDSP-littoralis_Contig1258 46967..47010 -
1680789553.1878664-CDS-P-littoralis_Contig1258:47088..471911680789553.1878664-CDS-P-littoralis_Contig1258:47088..47191Pylaiella littoralis U1_48CDSP-littoralis_Contig1258 47089..47191 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.198561-UTR-P-littoralis_Contig1258:47191..473011680789553.198561-UTR-P-littoralis_Contig1258:47191..47301Pylaiella littoralis U1_48UTRP-littoralis_Contig1258 47192..47301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1258.12.1prot_P-littoralis_Contig1258.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1258 46967..47191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1258.12.1

>prot_P-littoralis_Contig1258.12.1 ID=prot_P-littoralis_Contig1258.12.1|Name=mRNA_P-littoralis_Contig1258.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=49bp
MVFTLPAISFRRLLPLVLFISRMYMKGFPRNRVLPSPHEGFFQKSRFTF
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mRNA from alignment at P-littoralis_Contig1258:46967..47301-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1258.12.1 ID=mRNA_P-littoralis_Contig1258.12.1|Name=mRNA_P-littoralis_Contig1258.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=335bp|location=Sequence derived from alignment at P-littoralis_Contig1258:46967..47301- (Pylaiella littoralis U1_48)
CGTAGCAACAGTAACTGATGGGTTTCGGCTTTATAGAGAAGTTAACCGTC
GTACGTTCTTTCTCTTGTCTTTCTTACATCTAGAACGTAAATTGAGAGGT
TTTTCCATGAATGGTTTTTACCCTCCCTGCAATTAGTTTCAGGCGTTTGC
TTCCTCTTGTCTTGTTTATCTCTAGAATGTACATGAAGGGTTTTCCCAGA
AATCGGGTTTTACCTGCTTGGTTTCGCTTTCCTTTTGTCTTCCTTATCTC
TAGAAGGTACATGAAGGGTTTTCCCATAAATCGGGTTTTACCTTCCCCAC
ATGAAGGGTTTTTCCAGAAATCGAGGTTTACCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1258:46967..47301-

>mRNA_P-littoralis_Contig1258.12.1 ID=mRNA_P-littoralis_Contig1258.12.1|Name=mRNA_P-littoralis_Contig1258.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=147bp|location=Sequence derived from alignment at P-littoralis_Contig1258:46967..47301- (Pylaiella littoralis U1_48)
ATGGTTTTTACCCTCCCTGCAATTAGTTTCAGGCGTTTGCTTCCTCTTGT
CTTGTTTATCTCTAGAATGTACATGAAGGGTTTTCCCAGAAATCGGGTTT
TACCTTCCCCACATGAAGGGTTTTTCCAGAAATCGAGGTTTACCTTC
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