mRNA_P-littoralis_Contig1257.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE) HSP 1 Score: 120 bits (300), Expect = 7.710e-28 Identity = 94/218 (43.12%), Postives = 119/218 (54.59%), Query Frame = 3
Query: 6 LAQRAMRLVALNQVRDKKVYRIKLTAGVDMAEGSTRQQVWYSKGIKYPKGGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREKRPRVCQQNSQDPXXXXENR-GGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRPYLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
LAQR LV++ Q + K YR++LTA V +E Q W S IK PKG + R W AE FA +WRPS G+ DA A +AAP REKRPR C+ + + GGAR GSGRPKGSYG +R+R + ++ G A A+RD+ ML A V + +LK Q+N+GVGRK A+RKLAK RSQ E AA A
Sbjct: 25 LAQRGGELVSVRQEKSPKKYRVELTAHVHGSE-----QRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFS--SGNVPHTDASA---GEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAA 231
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE) HSP 1 Score: 120 bits (300), Expect = 1.260e-27 Identity = 94/218 (43.12%), Postives = 119/218 (54.59%), Query Frame = 3
Query: 6 LAQRAMRLVALNQVRDKKVYRIKLTAGVDMAEGSTRQQVWYSKGIKYPKGGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREKRPRVCQQNSQDPXXXXENR-GGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRPYLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
LAQR LV++ Q + K YR++LTA V +E Q W S IK PKG + R W AE FA +WRPS G+ DA A +AAP REKRPR C+ + + GGAR GSGRPKGSYG +R+R + ++ G A A+RD+ ML A V + +LK Q+N+GVGRK A+RKLAK RSQ E AA A
Sbjct: 25 LAQRGGELVSVRQEKSPKKYRVELTAHVHGSE-----QRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFS--SGNVPHTDASA---GEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAA 231
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: D7G0B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B2_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 7.990e-17 Identity = 58/132 (43.94%), Postives = 73/132 (55.30%), Query Frame = 3
Query: 123 WYSKGIKYPKGGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREKRPRVCQQNSQDPXXXXENRGGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAA 518
WYS+ + YP+ K R WVAE +FAK+WRPS S DAR + + A P REKRPR CQ R AREG GRPKGS+G +R+R LLH+ + + G A RD+ +A MLAA
Sbjct: 8 WYSEYMGYPESNKKARDWVAEENFAKAWRPSHSSGSAVLSKADARLRSE-DKPALPPREKRPRDCQPTCSAIHTPPAKRA-AREGEGRPKGSFGRKRLRALLHQYKVQVEQGQLTFARLQLRDLGSA-MLAA 136
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.740e-13 Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 3
Query: 357 RGGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRP-YLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
RGGAR G+GRPKGSYG +R+R + +L G Q A +RD+ A ++ AV + E+ RP +LK Q+N+GVGRK A+RKLAK RSQ E AA A
Sbjct: 139 RGGARPGAGRPKGSYGRKRLRQAAQQLNYYLERGQLQCAQMVSRDLPGA--MSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVA 237
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 5.230e-13 Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 3
Query: 279 DAAPSREKRPRVCQQNSQDPXXXXEN-RGGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRP-YLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
+ P REKRPR CQ ++ RGGAR G+GRPKGSYG R+R + +L G Q A +RD+ A + AV + + RP +LK Q+N+G+GRK A+RKLAK +SQ + A A
Sbjct: 25 EVTPPREKRPRDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGAML--DAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAA 150
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 3.650e-11 Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 3
Query: 57 KVYRIKLTAGVDMAEGSTRQQVWYSKGIKYPKGGKSNRHWVAEADFAKSWRPSRERVGGD--SSVDDARASMDAHQDA--APSREKRPRVCQQNSQDPXXXXENRGGAREGSGRPKGSYGPERMR 419
K YRI L A D+ EG ++ W S IK PKG K+ R AE F + WRPS GG+ + D+R ++A +A A +R KRPR C ++ + E RGG REG+GRP+GS+GP+++R
Sbjct: 36 KSYRIHLVA--DLREGVRKE--WRSTPIKRPKGRKTGRDRGAEHKFFEDWRPSE---GGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAAE-HARPEKRGGKREGAGRPRGSFGPKKLR 152 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1257.1.1 >prot_P-littoralis_Contig1257.1.1 ID=prot_P-littoralis_Contig1257.1.1|Name=mRNA_P-littoralis_Contig1257.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp MLAQRAMRLVALNQVRDKKVYRIKLTAGVDMAEGSTRQQVWYSKGIKYPKback to top mRNA from alignment at P-littoralis_Contig1257:5607..6265+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1257.1.1 ID=mRNA_P-littoralis_Contig1257.1.1|Name=mRNA_P-littoralis_Contig1257.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=659bp|location=Sequence derived from alignment at P-littoralis_Contig1257:5607..6265+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1257:5607..6265+ >mRNA_P-littoralis_Contig1257.1.1 ID=mRNA_P-littoralis_Contig1257.1.1|Name=mRNA_P-littoralis_Contig1257.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig1257:5607..6265+ (Pylaiella littoralis U1_48)back to top |