mRNA_P-littoralis_Contig1256.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1256.2.1
Unique NamemRNA_P-littoralis_Contig1256.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Match: A0A6H5K0Y8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.880e-9
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 DLRLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG 123
            D R VRNVS +R+D KDSDHNLVL  +RL  RVAPNRRVRG
Sbjct:   83 DRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRG 123
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BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Match: A0A6H5KHJ8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 8.210e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    7 RLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG 123
            R VRNVS +R+D KDSDHNLVL  +RLL RVAPNRRVRG
Sbjct:   85 RFVRNVSVKRVDFKDSDHNLVLTTVRLLPRVAPNRRVRG 123
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BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Match: A0A6H5JBR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBR2_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 8.760e-9
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 DLRLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG 123
            D R VRNVS +R+D KDSDHNLVL  +RL  RVAPNRRVRG
Sbjct:    5 DRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRG 45
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BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Match: A0A6H5JHC1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-8
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 DLRLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG 123
            D R VRNVS +R+D KDSDHNLVL  +RL  RVAPNRRVRG
Sbjct:  142 DRRFVRNVSVKRVDFKDSDHNLVLTTVRLAPRVAPNRRVRG 182
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BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.550e-8
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 DLRLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG 123
            D R VRNVS +R+D KDSDHNLVL  +RL  RVAPNRRVRG
Sbjct:  398 DRRFVRNVSVKRVDFKDSDHNLVLTTVRLRPRVAPNRRVRG 438
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BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Match: A0A6H5L3K6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3K6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.660e-8
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 DLRLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG 123
            D R VRNVS +R+D KDSDHNLVL  +RL  RVAPNRRVRG
Sbjct:   83 DRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRG 123
[Close]
BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Match: A0A6H5JV16_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV16_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.800e-8
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 DLRLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG 123
            D R VRNVS +R+D KDSDHNLVL  +RL  RVAPNRRVRG
Sbjct:    5 DRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRG 45
[Close]
BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.000e-8
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 DLRLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG 123
            D R VRNVS +R+D KDSDHNLVL  +RL  RVAPNRRVRG
Sbjct:  221 DRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRG 261
[Close]
BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Match: A0A6H5JZY1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY1_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.020e-8
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 DLRLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG 123
            D R VRNVS +R+D KDSDHNLVL  +RL  RVAPNRRVRG
Sbjct:   56 DRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRG 96
[Close]
BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.030e-8
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 DLRLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG 123
            D R VRNVS +R+D KDSDHNLVL  +RL  RVAPNRRVRG
Sbjct:  221 DRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRG 261
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1256.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0Y8_9PHAE3.880e-973.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KHJ8_9PHAE8.210e-976.92Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JBR2_9PHAE8.760e-973.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHC1_9PHAE1.120e-873.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVN7_9PHAE1.550e-873.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L3K6_9PHAE1.660e-873.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JV16_9PHAE1.800e-873.17Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KBZ6_9PHAE2.000e-873.17Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JZY1_9PHAE2.020e-873.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K259_9PHAE2.030e-873.17Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1256contigP-littoralis_Contig1256:5850..6911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size179
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.8315744-UTR-P-littoralis_Contig1256:5849..59011680789552.8315744-UTR-P-littoralis_Contig1256:5849..5901Pylaiella littoralis U1_48UTRP-littoralis_Contig1256 5850..5901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.8405778-CDS-P-littoralis_Contig1256:5901..59071680789552.8405778-CDS-P-littoralis_Contig1256:5901..5907Pylaiella littoralis U1_48CDSP-littoralis_Contig1256 5902..5907 -
1680789552.8492785-CDS-P-littoralis_Contig1256:6791..69111680789552.8492785-CDS-P-littoralis_Contig1256:6791..6911Pylaiella littoralis U1_48CDSP-littoralis_Contig1256 6792..6911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1256.2.1prot_P-littoralis_Contig1256.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1256 5902..6911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1256.2.1

>prot_P-littoralis_Contig1256.2.1 ID=prot_P-littoralis_Contig1256.2.1|Name=mRNA_P-littoralis_Contig1256.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=42bp
DLRLVRNVSGRRIDRKDSDHNLVLANIRLLGRVAPNRRVRG*
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mRNA from alignment at P-littoralis_Contig1256:5850..6911-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1256.2.1 ID=mRNA_P-littoralis_Contig1256.2.1|Name=mRNA_P-littoralis_Contig1256.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1062bp|location=Sequence derived from alignment at P-littoralis_Contig1256:5850..6911- (Pylaiella littoralis U1_48)
GACCTTCGGTTGGTGCGCAACGTCTCCGGACGGCGTATCGATCGTAAGGA
TTCCGACCACAACCTCGTCCTTGCCAACATCCGCTTGCTTGGCCGAGTGG
CACCGAATCGACGTGTGAGGGTGGGGCCTACGTAAATTTTTTGGACTCGA
ACATCGAACATCGAACAAGCGGCATAATCATGTGATTGGCCGTGAAAATA
AAATAAAACAATAGATGTTAGGGTGTTCGAGTTTTTCTACGCCGGATCTT
CCAGGGGCGATTCCGCCTCAAACTCTAACATCTTTCACAAAAACTCGAAA
ATTTAACATCGAACCTACAGTCCCGTGGGCTATTGACGAAACAAATTAAT
TGGTCACAAATAAAGAAGACCCGCGTCTATCGCTCCCTCTCAGGACAAGA
GAGAGAGGGGGACCGGGCGACCGAGAGAGGGACGACCGCAGAGCATAGCC
GCAAAACAAGTGTCTATGCCGAGCGACAGCGAGGTTTCGACTGATCTCAG
GGCCCCGCGTGCGCAAGCGGGGCCAAATGAGACGCAATCACACGGGCGTG
GCTTCCTGTCGCAACCACACAGCAGCCGTAGCAGCAGCAGCAGCAGCAGC
AGCAGCTGCGTACCGATATATTGTTGTTGATTCTCACATTAGCTCACTAC
CGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAG
GAAAAAAATAAAATAAAATATATGCACTATGATCACCCAGAGTCAAATCA
GATATGGTACCGTTGGGGTACCATCTGTGGTGGCCAGAATACCAAATACA
GAAAAAAATAACAGGCTCGAAAGAAAAACAAAAATATGACAGCCCGGTCT
ATTGGGGAGCACTTGCGTGTGTGTGTGTGTGCCTGTAGGATTTTTTCACT
CGCCTTTTCCGATACAAAGGACCCAAAAAGTCAAACATCGAACTGTCCGC
TTGTTCGATGTTCGATGTTCGAGTCCGAAAAAATTACGTAGGCCCCACCC
TGAGGGGTAGCAGCAGCAGTACCTCCGCTAGCATCGATCTACAACGGTTG
ATGGCGGACCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1256:5850..6911-

>mRNA_P-littoralis_Contig1256.2.1 ID=mRNA_P-littoralis_Contig1256.2.1|Name=mRNA_P-littoralis_Contig1256.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=126bp|location=Sequence derived from alignment at P-littoralis_Contig1256:5850..6911- (Pylaiella littoralis U1_48)
GACCTTCGGTTGGTGCGCAACGTCTCCGGACGGCGTATCGATCGTAAGGA
TTCCGACCACAACCTCGTCCTTGCCAACATCCGCTTGCTTGGCCGAGTGG
CACCGAATCGACGTGTGAGGGGGTAG
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