mRNA_P-littoralis_Contig1256.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1256.5.1
Unique NamemRNA_P-littoralis_Contig1256.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1256.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1256contigP-littoralis_Contig1256:17516..24102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size260
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.6896367-UTR-P-littoralis_Contig1256:17515..175481680789552.6896367-UTR-P-littoralis_Contig1256:17515..17548Pylaiella littoralis U1_48UTRP-littoralis_Contig1256 17516..17548 +
1680789552.7304194-UTR-P-littoralis_Contig1256:24040..241021680789552.7304194-UTR-P-littoralis_Contig1256:24040..24102Pylaiella littoralis U1_48UTRP-littoralis_Contig1256 24041..24102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.7079425-CDS-P-littoralis_Contig1256:17548..176441680789552.7079425-CDS-P-littoralis_Contig1256:17548..17644Pylaiella littoralis U1_48CDSP-littoralis_Contig1256 17549..17644 +
1680789552.7203846-CDS-P-littoralis_Contig1256:23971..240401680789552.7203846-CDS-P-littoralis_Contig1256:23971..24040Pylaiella littoralis U1_48CDSP-littoralis_Contig1256 23972..24040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1256.5.1prot_P-littoralis_Contig1256.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1256 17549..24040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1256.5.1

>prot_P-littoralis_Contig1256.5.1 ID=prot_P-littoralis_Contig1256.5.1|Name=mRNA_P-littoralis_Contig1256.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MARPTRDQHEKNVCYFWLVYEDWFWTVIMLNSEGSGTCKGSAAVATRIMV
GLFQ*
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mRNA from alignment at P-littoralis_Contig1256:17516..24102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1256.5.1 ID=mRNA_P-littoralis_Contig1256.5.1|Name=mRNA_P-littoralis_Contig1256.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6587bp|location=Sequence derived from alignment at P-littoralis_Contig1256:17516..24102+ (Pylaiella littoralis U1_48)
GGTCCCTCGCCATGGCGCGGTCGCCGCAGGGTCATGGCGCGGCCAACGCG
CGATCAACATGAGAAGAACGTGTGCTACTTCTGGTTGGTCTACGAGGACT
GGTTCTGGACCGTCATCATGCTGAACTCGGTACGACCGTACGATGAATCC
ATGCGTTGTGACCGTCGTTTATTTGAGTCAATCGTAGTATACTGAGCGTT
AGAGGTCTTCAACGAAGCAAAGAGTGCGCACAACCGCGAAGGGTAGGAGG
GCTGACTCGAAGTAGCCAACTGCTGATGCGTTCAACCGGGAAGCACAGCA
CGAATCACCAACGCTACTCGTAGATATATATTCTCGACTCTGCTGAGGCA
GTGGGCGCAGTTGATTCTGGCGGTGAAGGAGCGCCGATGGGTCACGCAAT
GACTCGAGAGACGGGCCTGTGCCTTCAATTAAGCAAGGAATGCGCAAATC
ATAGTATCACTGCAACAACAGCACCACCTGCACAAGCAGTACAGTAGTCA
CCGCCGGCACCGGAAATTGTGTTCGAGGATGTGCAAGCATGACCAAGCAA
GGTAAGGCGCTGTTTGAGACGAGATAAACGTATACTCGAAGTATCACATT
CGTCGCACGTGTAGTCGCGGCGCAAGCCACCTGGTCAACCCGCGTTATAC
TGAGGGTGTGCACATATTCATACATGCGCCGAAGATAGCGTGCAGTGGCG
ACAATCCAATAGGTTGGAGACAGGGTTGCAAACCGAAAGCCGCTGGGGAT
GATGCAGCGTGGGCTTATTGTTAGACATTCATTCGGTACTGCTGTACCAA
AACGGGGACGAATTTGCGAATTTGAGAACATCCCAAGAGTGCAAACAAAG
AACATCCACCTGAGCCGGGACTCAACAGAGTCCGTCGAGAACTAAACGGC
GAGGGTTCACCGACGGTAATCTAATCTGCTGTCAGAAACATAACAGCAGC
ACAAAAACATATGTTAGAGACCCTGATCGACGCTGCCGGAAAGTACGGGC
CCACGGCGGAAGTGGGCGATGTTGCGCTAAACGGCACCATACAAACCTAC
ATTTTCGAACGGAGTGTTATTGTTTCTTGTCATCATGTAAACTTGAGAAA
AAATAAAATAATAATACTAATAATAATAATAAAAGAGAACGCCCGCTTGG
AGCGGGGCGGAACGCAGGACCCCGCTAGGTCAACAGAACCGATTTACTGC
TGTTTTGATGGACGTGAAATTTATCTCTTTACACCAGGAACACATCACGT
AACAGCGGTATACTCCGACGTATCATGCTGTATAATACTGCCATGTCTTC
GTACTGGATACGAAGTACTTTCGAACGAAACTTCGTAGGTTATTTCTTCG
CGTATACACTGCTGTACACTACGTGAAGTTTTCGTATACAGCAGTGGTAT
AGGATGGAGATCAGCGCATTTTTGGGTGCTTTAGAGGTGGCTGTGCGAGT
ACGAGAAACGAGCTGGCTTATGTGCACCCATCCTATGATCATATCGACCA
CGTCGTTTGTGTACGAGAAACGAGCCTGCGAGTTGGTCAGCATTACTGCT
GTAGACGAAATAGAATGTACTAATATCATACGCATGATACACTGAAGTTC
GTTTGGAAGATCTGACGTACGACTCATGTCGCTGGCATCGCCGATTTAGT
TGTTCGGCCCGCTGCCATCCAGCGCATAATTTAATAATATTTCGCACGTC
CGCCGAGAACCCACGCTGAAAGCCACAACAGCGTCTACTTGTGCCATAGT
TCGGCAACACGTACTCCGTATTGGTCGTGTCATTATAAAGCAACTGCTGT
TCTACTGCCCGCGAATCCATACGATATGACATGTATTACGAAGTACTTCG
AAGTATGTTTAATCCTACTGCTGCAGTCAATCACGTCTTGTCGGAAACCC
GTTCGCGAGGGTAAAACACGGAATGCGTCGCCGATCGCATGCTATCATCA
TCGGACAAATAATGAAATGCATAGCAGAGCTGTTGAGAGGAAGACAGCAG
TGCACACACCCACGCAAACTGATGCGGTCATGGGCGGGAGCTCGAATATC
CTTCAGAAGCCTCCCGTTCTCCTGTAGCATTAATGGAAGCGAGGGGTGAT
AACGATGAGAAGGAGAGTACACGGCACGATGCGGAGATCGCGGGCGGGGA
ACGCTTGCGTCCCAGATCACTGGATGGTACACTGAGTACCGAATTTCACG
TACGAACATGTGTACGGAGGAGCCCGAACCAACGACTTTCCGAGGTATGC
CACTGCTCACTGTTGGAACGGCGCATTGTATGATTCAGTTTATTGTAACA
ACAACGAATGTGTGGACCATTTCGCACCTAAGCGTAGACAAGCGTAACCC
TTATCATCGCGTATCGCAGACTTCATCGTGAGTGAAAGGTCCTTGAACTC
CCCGCGATTGCGGAGGACATACCAAGGGAACAAGAGAAAGTCCGGGAGGC
ACCAAGAATGATGACAACAAGGGGACTGCTGTTAGTGTCATAAAACGCAA
GTGTCGTGAATAACAATGTCAGTCATTCGATCGGGACAAACCCAGGCCCA
CTACAGAAAATATTTACTCAAACGGGTAGGATGGGCGAACACAGAGCGTT
CTTATCACCTTTATATCCTTTCCTTAGCTGACATGGCCGCAGGAAATCTT
TTTCCCACGAGATTTTTTTTCCCGTGGTTCATGTTTGAATACGAGAGGAG
AGAAGATTGATGAGAAggATAAAACAAGTTCGGCATGATCAGGTGATTGC
TGCCGTAGGACGTTGGAATCTAAGTATACCTCGGGATGTGCACCGTTTGA
GGTGGTTTCCAATGCCAGCAATATTGCAAACGAAACATCCTTTCGGCGAA
GTTCAAACCGTCATTCTAAGTCGTTCTGCTGCTGGCTGTCGGTGTCGGCG
CAATGGTAGCGTATTGATTGCGGGCCGTGCTTACGCCGGAGCGTAAACAA
AGGTcCCCCACGTCCTCGCGTCTCGTAGACCTcCCCGTTGATCTATCGCC
CTCACATGCCCCACGGTTCCGAAGGCACGTCAAGGGAACAGGAGGGGATG
CAAGGAGACAGCAGTGTGAATCTACGAATTGCGAGAGTACGGGGTGACAG
CAGTGTCGTAATACATATGTGATGCGAGCCATGCGGGTGCATATCGTTTA
TACAGTGTTCAAACTTAGCCCTGAAGAGGGTTGGGAGACACAGTCACTAC
CAAACTCATGGCCTCAGTCTTTGTCACTTTTCCGTCCTTTGAATTGTTAA
CATGGCCATAGGGAAACTATTTTTCCCAAAAGAGGTTTTATTTTCCTTGG
GCGTGTCAGCGGTTGAAAAGAGGGGTCAGCGACGAGAAGGAGAGTACGCG
GCACAATCCGGTGATCGCGGCCGCGGGACGGTGGCGTCCAAGTGTACTGG
GATCGTACACCGGTGATTGGATCCCAACAACAGTTAAACGTTCGGAATGC
ATACGATGGAGCCCGAAATATCGACATTTGATTTTTATTGCGGGCTTACA
CGTGGTGACAACGAATTTATTGCGGGCCGATTTACGCTGGAGCGTGGACA
AGGGCAAGTTGCGGGCCGATTTACGCTGGAGCGTAGACAAGGGCAAGCCG
CGGACCGATTTACGCTGGAGCGTAGACAAGGGCAAGTTGTGGGCCAATTT
ACGCTGGCGCGTAGACAAGGGCAAGTTGCGGGCCAATTTACGCTGGAGCG
TAGACAAGGGCAAGCCGCGGACCGATTTACGCTGGAGCGTAGACAAGGGC
AAGTTGTGGGCCAATTTACGCTGGAGCGTAGACAAGGGCCAGCTGCGGGT
CAATTTACGCTGGAGCGTAGACAAGGGCAATTTGCGGACCGATTTACGCT
GGGACAAACTCAGAGCGTTCTTATCACCTTTATATCCTTTCCTTAGCTGA
CATGGCCGCAGGAAATCTTTTTCCCACGAGGTTTTTTTTCCCGTAGTTCA
TGTTTGAATAAGAGAGGAGAGAAGATTGATGAGAAAGAAACAGGTTCGGC
ATGATCAGGTAATTGCTGCCGTAGGACGTTGGAATCTAAGTATACCTCGG
GATGTGCACCGTTTGAGGTGGTTTCCAATGCCAGCAATATTGCAAACGAA
ACATCCTTTCGGCGAAGTTCAAACCGTCATTCTAAGTCGTTCTGCTGCTG
GCTGTCGGTGTCGGCGCAATGGTAGCGTATTGATTGCGGGCCGTGGTTAC
GCCGGAGCGTAAACAAAGGTCCCCCGCGTCCTCGCGTCTCGTAGACCTCC
CCGTTGATCTATCGCCCTCAAATGCCCCACGGTTCCGAAGGCACGTCAAG
GGAACAGGAGGGAATGCAAGGAAACAGCAGTGTGAATCTACGAATTGCGA
GAGTACGGGGTGACAGCAGTGTCGTAATACATATGTGATGCGAGCCATGC
GGGTGCATATCGTTTATACAGTATTCAAACTGAGCCCTGAAGAGGGTTGG
CAGACACAGTCACTACCAAACTCATGGCCTCAGTCTTTGTCACTTTTCCG
TCCTTTGAATTGTTAACATGGCCATAGGGAAACTATTTTTCCCAAAAGAG
GTTTTATTTTCCTTGGGCGTGTCAGCGGTTGAAAAGAGGGGTCAGCGACG
AGAAGGAGAGTACGCGGCACAATCCGGTGATCGCGGCCGCGGGACGGTGG
CGTCCAAGTGTACTGGGGTCGTACACCGGTGATTGGATCCCAACAACAGT
TAAACGTTCAGAATGCATACGATGGAGCCCGAAATATCGACATTTGATTT
TTATTGCGGGCTTACACGTGGTGACAACGAACTTATTGCGGGCCGATTTA
CGCTGGAGCGTGGACAAGGGCATGTTGCGGGCCAATTTACGCTGGAGCGT
AGACAAGGGCAAGCCGCGGACCGATTTACGCTGGAGCGTAGACAAGGGCA
AGTTGTGGACCGATTTACGCTGGAGCGTAGACAAGGGCAAGCCGCGGACC
GATCTACGCTGGAGCGTAGACAAGGGCAAGTTGTGGGCCAATTTACGCTG
GAGCGTAGACAAGGGCCAGCTGCGGGCCAATTTACGCTGGAGCGTAGACA
AGGGCCAGCTGCGGACCGATTTACGCTGGAGCGTAGACAAGTGTGCCCCA
TGTCCTCGCGTCTCGCAGATTTCCCCTTTTTGTGCGAGGTTTCGAAGGTT
CGAATGTCCCACGGTTCCGTGGGATATGCCAAGAAAGGGGAGGAATGCAG
GAAGAGACTGCTGTGAAGCAAGATTGCGAGAGTACGGGATGGCATTGACG
TTATAAAACGATGAAATACGCAAGTGCACTGGGTCTACCCCATTGGTGGT
TCCCAACGAAAGAGTATATTTTGCGAAATCGCACGCGAAGCGCCCGCAAT
AAACCGGTCGTGAGAAGGACCTTATAAAATAACCTCTACAAGCTATACTG
CGGGTGCTTCTTTGCAACCCATTAGTGTGCAGCCAGACACGCTGGGACAT
GTTGGGGTTGCACGCCAGTTTCAGGTTACCGGAAGGTTTTTGTCACATAC
AAACGAAATAATACGAATGGGTTTGGTATGCCGGTACGTGCTATACAACT
CAGTGGTGTGCGAAACAGACACGATGGTGCATGTTGGTGGTGCACACCAG
TTTCAGTCCCGGTAGTGTTTCGTCACATATGAACGAAATGTTATTTACCG
GGCGATTCGTGCTGGTGCATGCTAGATAACTCAATTGTGTGCAAACATAA
ACGCTGGTTGGTGCATTTGGGTATGGCACACCAGTTTCAGGTTCCCGGAG
GTGTTTCGTCACATAAGAACGAAAAATTGTATTGGATCAGGTGCTACATG
CCGGTGCATGCTAGATAACTCCATTGAGTTGTAAACAGACATCTGGTGCA
AGTGGGTGTTACACGCCCATTTCGGTTCCCGGAAGTGTTTCGTCAAATAC
CAACGAAATGCTACTGACGGGTATTACATGCCGGTGCATCCAATACAAAT
CAGACACGCTGGTGCACGTCAGTGCTGCACACCAGTTTCAGTTCCGGTAG
TGTTTCGTCTCATATGAACGAAATGTTATTACCGGGCGTTTCGTGCTGGT
GCATGCTAGATAACTCAATTGTATGCAAACATAAACGTTGGTTGGTGCAT
GTGGATATGCACACCAGTTTCAGGTTCCCGGAGGTGTTTCGTCACATATG
AACGAAAAATTGTATTGGATAAGGTGCTACATGCCGGTGCATGCTAGACA
ACTCAATGGTGTTGCAAATAGACATGCTGGTGCAAGTGGGTGTTACACGC
CAATTTCGGTTCCCGGAAGTGTTTCGTCAAATACCAACGAAATGCTACTG
ACGGGTATTACATGCCGGTGCATGCAATACTAATCAATGGTGCGCAAACA
GACACGCTGTGCACGTCGGTGCTGCACACCGGTGACAATCATTGAAAACT
TTTCCCATTTTCCTCGCGATTTGCCTGTCGAAGGTACTGTCTGTCTGTTT
CCCAAGGAAGGTTCAGGCACATGCAAGGGAAGCGCTGCTGTGGCCACGAG
GATCATGGTGGGGCTTTTTCAGTAGAAGCTGAAAAACAACGGCGATGGCA
ACGGAAATCGCGGAGCTAATCCTGGATAGCAGCCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1256:17516..24102+

>mRNA_P-littoralis_Contig1256.5.1 ID=mRNA_P-littoralis_Contig1256.5.1|Name=mRNA_P-littoralis_Contig1256.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig1256:17516..24102+ (Pylaiella littoralis U1_48)
ATGGCGCGGCCAACGCGCGATCAACATGAGAAGAACGTGTGCTACTTCTG
GTTGGTCTACGAGGACTGGTTCTGGACCGTCATCATGCTGAACTCGGAAG
GTTCAGGCACATGCAAGGGAAGCGCTGCTGTGGCCACGAGGATCATGGTG
GGGCTTTTTCAGTAG
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