mRNA_P-littoralis_Contig1254.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1254.11.1
Unique NamemRNA_P-littoralis_Contig1254.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Match: A0A6H5JZ79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ79_9PHAE)

HSP 1 Score: 533 bits (1374), Expect = 1.730e-185
Identity = 258/365 (70.68%), Postives = 303/365 (83.01%), Query Frame = 3 
Query:   45 ERIHFETATRVLNYEIAAERAEAK-EKTTSLSRQEAKKQRLEALNKDFLGQLDPMEKDYTAMVDYKWDKQPELITFSAYGVLYNWHLPIGILMREALGRSHDYVHRMPPPGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKTMNEFYLEEELVLEKIDDIVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWRDTNGGPKLAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMYELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGMEAVRVKRVQSMYERPDEPYEYHRVYEIGELLNRLGLPEAVEEYMGRRRGKFWEEAEDEDDEDYLDDFYTGDEDIQLY 1136
            ERIHFETATRV+NYEI AERAE    K   L+  EA++ R   L  ++ G ++  E+D     DY WD++PELITFSAYGVLYNWHLP+G+LMREALGRSH+YVHRMPPPGAF+KHFK  HE+A++H+PCYGA+ N+SSWDWWFHVF  +YLKT+NEFY++E++VL+KIDD+VDELYYEI VGPEAFEV PL KVVLDRLAAWRD  GGPKLAVVA+DD+RLHVVLENLGLLPYFDFVLTSRETG+E  +T MYE+A+ETAGVK A KGLHVG  YE+DI GSCEAGMEAV VKR Q++YERP+EPYE+HRVYEIGELLNRLGLP+A EEYM RRRG FW        ED+LD+FY  D+ +  Y
Sbjct:  169 ERIHFETATRVMNYEIQAERAEVMLSKNKKLTPAEARRLRRADLKNNYYGLIEVTEEDEGVRADYTWDQEPELITFSAYGVLYNWHLPMGLLMREALGRSHNYVHRMPPPGAFQKHFKESHEDAAYHIPCYGAHENMSSWDWWFHVFTDAYLKTINEFYMDEDIVLDKIDDLVDELYYEITVGPEAFEVMPLVKVVLDRLAAWRDNEGGPKLAVVADDDDRLHVVLENLGLLPYFDFVLTSRETGYEPRETNMYEIALETAGVKQAKKGLHVGCKYETDITGSCEAGMEAVSVKRCQTLYERPNEPYEFHRVYEIGELLNRLGLPQADEEYMSRRRGNFWXXXXXXXXEDFLDEFYGADDGLDEY 533
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BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Match: D8LIY6_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY6_ECTSI)

HSP 1 Score: 526 bits (1354), Expect = 1.740e-184
Identity = 253/366 (69.13%), Postives = 302/366 (82.51%), Query Frame = 3 
Query:   45 ERIHFETATRVLNYEIAAERAEAK-EKTTSLSRQEAKKQRLEALNKDFLGQLDPMEKDYTAMVDYKWDKQPELITFSAYGVLYNWHLPIGILMREALGRSHDYVHRMPPPGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKTMNEFYLEEELVLEKIDDIVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWRDTNGGPKLAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMYELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGMEAVRVKRVQSMYERPDEPYEYHRVYEIGELLNRLGLPEAVEEYMGRRRGKFWEEAEDEDDEDYLDDFYTGDEDIQLYE 1139
            ERIHFETATRV+NYEI AERAE    +   L+  EA++ R  AL  ++ G ++  E+D   M DY WD++PEL+TFSAYGVLYNWHLP+G+LMREALGRSH+Y+HRMPPPGAF+KHFK  HE+A++H+PCYGA+ N+SSWDWWFHVF  +YLKT+NEFY++E++VL+KID++VDELYYEI VGPEAFEV PL KVVLDRLAAWRD  GGPKLAVVA+DD+RLHVVLENLGLLPYFDFVLTSRETG+E  +T MYE+A+ETAGVK A KGLHVG  YE+DI GSCE GMEAV VKR Q++YERP++PYE+H VYE  ELLNRLGLP+A EEYM RRRG FW        ED+LD+FY  DE +  YE
Sbjct:   35 ERIHFETATRVMNYEIQAERAEVMLSENKKLTPAEARRLRRAALKNNYYGLIEVTEEDEGVMADYTWDQEPELVTFSAYGVLYNWHLPMGLLMREALGRSHNYIHRMPPPGAFQKHFKESHEDAAYHIPCYGAHENMSSWDWWFHVFTDAYLKTINEFYMDEDIVLDKIDELVDELYYEITVGPEAFEVMPLVKVVLDRLAAWRDNEGGPKLAVVADDDDRLHVVLENLGLLPYFDFVLTSRETGYEPRETNMYEIALETAGVKRAKKGLHVGCKYETDITGSCETGMEAVSVKRFQTLYERPNDPYEFHPVYENRELLNRLGLPQADEEYMSRRRGNFWXXXXXXXXEDFLDEFYGADEGLDEYE 400
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BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Match: A0A7S2G2K6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2K6_9STRA)

HSP 1 Score: 147 bits (370), Expect = 4.340e-37
Identity = 88/265 (33.21%), Postives = 146/265 (55.09%), Query Frame = 3 
Query:  246 KQPELITFSAYGVLYNWHLPIGILMREALGRSHDYVHRMPPPGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKTMNEFYLEEELVLEKIDDIVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWRDTNGGPKLAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMYELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGMEAVRVKR---VQSMYERPDEPYEYHRVYEIGELLNRLGL--PEAV 1025
            ++P+LITF A G L     P+G+  R+ L   H  + R+P P  F   FK V++      PC+G + +IS+ DWW  V   +Y K      +  +++      + DELY+E+  G + +E+   T +VLD+L  W++T  GP+L V++  DERL  +LE LG+  YFD ++TS+E G E     ++++A+   G+      +HVG +Y++D++G+  AG  A+ VK         +  D P+    V ++G++L+  GL  PE V
Sbjct:   89 QKPQLITFDATGTLIQLAEPVGMHYRQVL-MKHTGI-RLPRPDIFTDAFKEVYDAKCQASPCFGCSDSISAQDWWASVVRDTYTKVG----VPSDIIDPLFPLLFDELYHEVFTGTDGWELNADTMMVLDKLKEWQETGDGPRLGVISNFDERLPKLLEALGIADYFDIIITSKECGMEKPCRQIFDIALTRLGIYERDAAVHVGNDYDTDVKGATAAGWNALYVKEPAYTNLPAQTTDTPFTV--VGDLGKVLDVFGLEDPEQV 345
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BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Match: W7TTJ7_9STRA (Haloacid dehalogenase-like hydrolase domain containing 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTJ7_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.110e-35
Identity = 87/248 (35.08%), Postives = 133/248 (53.63%), Query Frame = 3 
Query:  252 PELITFSAYGVLYNWHLPIGILMREALGRSHDYVHRMPPPGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKTMNEFYLEEELVLEKIDDIVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWRDTNGGPKLAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMYELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGMEAVRVKRVQSMYERPDEPYEYHRVYEIGEL 995
            PELIT +A+G+L      +G+  RE   + +DY  R+P P  F   F   ++      P +GA   +S+ +WW  +F     KT  +    +E + E    + +ELYYE +    A+E       ++D+L  WR   GGPKL V+ + DERL  +LENL +L YFD V++SRE+G    D   + LAME AGVK   K +H+G N++ D+ G+  AGM+++ V      Y  P++        +IG+L
Sbjct:  114 PELITMNAFGLLIEPTDEVGLFFREVFMKHYDYKVRLPRPERFTVAFDKAYDARRSEYPNFGAKAGMSAEEWWAPIF----YKTFLDVGFPKEDLDEVFVGVFEELYYESLTSEWAWETVDDVLPMMDKLQEWR-MQGGPKLGVICDYDERLITILENLDILHYFDVVVSSRESGAGKPDPRPFLLAMEKAGVKDPKKVMHLGRNFDHDVVGAAAAGMDSMWVVMPSYDYLEPEQEARQVEFTKIGDL 356
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BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Match: A0A7S2STH1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STH1_9STRA)

HSP 1 Score: 135 bits (341), Expect = 9.940e-33
Identity = 89/288 (30.90%), Postives = 153/288 (53.12%), Query Frame = 3 
Query:  252 PELITFSAYGVLYNWHLPIGILMREALGRSHDYVHRMPPPGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKTMNEFYLEEELVLEKIDDIVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWRDTNGGPK---LAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMYELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGMEAVRVK----RVQSMYERPDEPYEYHRVYEIGELLNRLGLPEAVEEY-MGRRRGKFWEEAEDEDDED 1091
            P ++TF A G L     P+G+  REAL ++     R+P P  F+  FK V++  S   PC+G    + S DWW+ V   +YLKT     + E+++   + +I D LY  +  G E +E+      VLD L   +++        L V++  DERLH +L+NLG+  YFD VLTS+E   E  ++ ++++A+   G+    + +H+G  ++ D+ G+  AG  A+ V+    R++++ + P +  E+ RV ++  +L+   L +      M   RG F  +AE + +ED
Sbjct:  101 PRVVTFDATGTLMQLTEPVGMHYREALLQASGL--RLPSPDHFDAAFKEVYKAQSEEFPCFGCGAAMPSRDWWYPVVRDTYLKTG----VPEKILDPLLPEIFDSLYDNVFAGSEGWELNEQAIYVLDTLIELKESRAEDDPLYLGVISNFDERLHKLLDNLGIAHYFDIVLTSKECCVEKPNSPIFDMALSRLGIYDRSRAVHIGDTFDKDVAGAARAGWNAIFVRAPPYRMKNVDDLPCD-IEFQRVGDLSHVLDIFNLADFERPVIMTSARGIFEYDAEGDAEED 381
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BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Match: A0A7S2PCP1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCP1_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.660e-30
Identity = 76/226 (33.63%), Postives = 116/226 (51.33%), Query Frame = 3 
Query:  252 PELITFSAYGVLYNWHLPIGILMREALGRSHDYVHRMPPPGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKTMNEFYLEEELVLEKIDD-----IVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWRDTNGGPKLAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMYELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGMEAV 914
            P+LITF A   L      +G+  R  L  +  +  R+P P  F   F     E +   PC+G  + ++S +WW    CT     + E    E  + +++D      + + LY ++    EA+E+ P     L R   WR+  GGP+LAV++  DERLH +L+ +G+   FDFVLTSRE G E  +   +E+AM  AGV      +HVG  ++SD+ G+  AG  +V
Sbjct:   89 PQLITFDATDTLIQLKSEVGMTYRLILHEATRFRSRLPTPAVFTSAFNQAFTETNEKYPCFGCGLGMTSREWWAE--CTKRTYALVEHIDYERGLRDRMDGPLGDAVAEVLYNQVFASTEAWELKPGVLDALSRFKMWRE-EGGPQLAVLSNFDERLHSILDQVGVADAFDFVLTSREIGSEKPNRSAFEVAMSRAGVADPSLCMHVGDGFDSDVVGASNAGWHSV 311
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BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Match: A0A812QRQ7_SYMMI (Hdhd3 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812QRQ7_SYMMI)

HSP 1 Score: 87.8 bits (216), Expect = 7.100e-16
Identity = 73/234 (31.20%), Postives = 103/234 (44.02%), Query Frame = 3 
Query:  252 PELITFSAYGVLYNWHLPIGILMREALGRSHDYVHRMPPPGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKTMNEFYLEEELVLEKIDDIVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWRDTNGGPKLAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMYELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGMEAVRVKRVQSMYERPD 953
            P LI+  + G L     PIG L  +AL R    V          + F  +    S   P +GA       +WW  V       TM    +    + E  + + D+LY  +  G EA+E+ P T   L+ L  W   N    L V++  D+RL V+L+NLG+L  FDFVLTS E   E     ++  A+E AG+      LH G +Y+ D+ G+      AV V       ER D
Sbjct:   48 PRLISLDSTGTLMRVRRPIGDLYADALHRVRPDV--QVSAAEMTRVFPAIFSRQSSLSPSFGAG-GCGCREWWRAVV----EGTMGGAGIAVSDLGESFEAVFDDLYGHVFCGQEAWELLPRTVRSLESLREWCAANDCV-LGVMSNMDDRLSVILQNLGILDKFDFVLTSYEARAEKPSAIIFTKALEVAGLAPTSHALHCGDSYKRDLIGATSVNWMAVLVDEAVDKAERLD 273
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BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Match: A0A2P6N2V2_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N2V2_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 1.280e-15
Identity = 64/196 (32.65%), Postives = 92/196 (46.94%), Query Frame = 3 
Query:  369 PGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKTMNEFYLEEELVLEKIDDIVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWRDTNGGPKLAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMYELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGMEAVRVKRVQSMYERPDE 956
            P      F   +++A    P +G+  N+ S  WW  V   +Y         EEE  L K+ D +    Y      E +++ P TK VL  +    D+ G     ++   DER+H VLE+LG+   FDFVL SRE G    D  +Y  A   +   H  + +HVG +YE D  G+   GMEA+ V R Q M E  ++
Sbjct:   68 PDELRDSFYRAYKQADAKWPNFGSENNVESKQWWKEVVYNTYRGADYLTSKEEEETLSKMSDSL----YSQFSSVEGYKLFPETKAVLADVRERVDSIG-----LITNTDERIHQVLESLGIHHLFDFVLCSREFGKRKPDPSIYTEACRLSK-HHPSQVMHVGDHYEKDFLGAKGIGMEALLVTRGQDMEEERED 253
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BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Match: L8GZ50_ACACA (HAD hydrolase, REG2-like, family IA subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZ50_ACACA)

HSP 1 Score: 85.9 bits (211), Expect = 1.900e-15
Identity = 75/272 (27.57%), Postives = 132/272 (48.53%), Query Frame = 3 
Query:  249 QPELITFSAYGVLYNWHLPIGILMREALGRSHDY--VHRMPPPGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKTMNEFYLEEELVLEKIDDIVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWRDTNGGPKLAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMYELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGME-AVRVKRVQSMYERPDEPYEYHRVYEIGELLNRLGLPEAVEEYMGRRRGK 1055
            +P+L++  A G L+     +G    EA  R+ +   VH + P  +  + F     + +   P +G    +SS++WW  +F  +      E    EE   +    + D+++++     EA+EV P T+ V+  L +      G K+AVV+  DERL ++L+NLGL   FD VL S   G    D  ++  A+  A V+ + + +HVG +Y+ D RG+ +AG+  A  + R     E+  +      ++ + +LL  LGL       + + +GK
Sbjct:    4 RPKLVSLDATGTLFRVRGSVG----EAYARAAEAFGVHGLRP-ASLTRGFFAAWRDHNVRHPNFGHGTELSSYNWWSSLFGATLAHARPELSHSEEFAADVFPKLFDQVWHD-FTRAEAWEVFPETEPVIKTLRS-----NGIKVAVVSNFDERLPLLLKNLGLDHLFDVVLPSCYAGVAKPDPDIFYQALRKANVEGS-EAVHVGDDYKKDYRGAKDAGLSRAFLMCRDAVALEKAAQVPPADILHNLSDLLPALGLQGPTLAQLSQCQGK 263
[Close]
BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Match: A0A1Q9ERX8_SYMMI (Haloacid dehalogenase-like hydrolase domain-containing protein 3 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9ERX8_SYMMI)

HSP 1 Score: 87.8 bits (216), Expect = 4.370e-15
Identity = 73/234 (31.20%), Postives = 103/234 (44.02%), Query Frame = 3 
Query:  252 PELITFSAYGVLYNWHLPIGILMREALGRSHDYVHRMPPPGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKTMNEFYLEEELVLEKIDDIVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWRDTNGGPKLAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMYELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGMEAVRVKRVQSMYERPD 953
            P LI+  + G L     PIG L  +AL R    V          + F  +    S   P +GA       +WW  V       TM    +    + E  + + D+LY  +  G EA+E+ P T   L+ L  W   N    L V++  D+RL V+L+NLG+L  FDFVLTS E   E     ++  A+E AG+      LH G +Y+ D+ G+      AV V       ER D
Sbjct:  545 PRLISLDSTGTLMRVRRPIGDLYADALHRVRPDV--QVSAAEMTRVFPAIFSRQSSLSPSFGAG-GCGCREWWRAVV----EGTMGGAGIAVSDLGESFEAVFDDLYGHVFCGQEAWELLPRTVRSLESLREWCAANDCV-LGVMSNMDDRLSVILQNLGILDKFDFVLTSYEARAEKPSAIIFTKALEVAGLAPTSHALHCGDSYKRDLIGATSVNWMAVLVDEAVDKAERLD 770
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1254.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ79_9PHAE1.730e-18570.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIY6_ECTSI1.740e-18469.13Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
A0A7S2G2K6_9STRA4.340e-3733.21Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W7TTJ7_9STRA1.110e-3535.08Haloacid dehalogenase-like hydrolase domain contai... [more]
A0A7S2STH1_9STRA9.940e-3330.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2PCP1_9STRA4.660e-3033.63Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A812QRQ7_SYMMI7.100e-1631.20Hdhd3 protein n=3 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A2P6N2V2_9EUKA1.280e-1532.65Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
L8GZ50_ACACA1.900e-1527.57HAD hydrolase, REG2-like, family IA subfamily prot... [more]
A0A1Q9ERX8_SYMMI4.370e-1531.20Haloacid dehalogenase-like hydrolase domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1254contigP-littoralis_Contig1254:41033..48980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LT61
Preferred nameHDHD3
PFAMsHAD_2,Hydrolase,Hydrolase_like
Model size1142
Max annot lvl2759|Eukaryota
KEGG koko:K07025,ko:K11853
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237
Exons8
Evalue1.68e-18
EggNOG OGsCOG1011@1|root,KOG3085@2759|Eukaryota
EC3.4.19.12
DescriptionN-acylneuraminate-9-phosphatase activity
Cds size939
COG categoryP
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1254.11.1prot_P-littoralis_Contig1254.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1254 41033..48777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.5125597-CDS-P-littoralis_Contig1254:41032..412211680789552.5125597-CDS-P-littoralis_Contig1254:41032..41221Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 41033..41221 -
1680789552.526355-CDS-P-littoralis_Contig1254:42053..421611680789552.526355-CDS-P-littoralis_Contig1254:42053..42161Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 42054..42161 -
1680789552.5414252-CDS-P-littoralis_Contig1254:42957..430321680789552.5414252-CDS-P-littoralis_Contig1254:42957..43032Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 42958..43032 -
1680789552.551048-CDS-P-littoralis_Contig1254:44047..441731680789552.551048-CDS-P-littoralis_Contig1254:44047..44173Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 44048..44173 -
1680789552.5608573-CDS-P-littoralis_Contig1254:44789..449031680789552.5608573-CDS-P-littoralis_Contig1254:44789..44903Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 44790..44903 -
1680789552.5732636-CDS-P-littoralis_Contig1254:45621..457391680789552.5732636-CDS-P-littoralis_Contig1254:45621..45739Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 45622..45739 -
1680789552.5836656-CDS-P-littoralis_Contig1254:46697..469031680789552.5836656-CDS-P-littoralis_Contig1254:46697..46903Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 46698..46903 -
1680789552.5965905-CDS-P-littoralis_Contig1254:48774..487771680789552.5965905-CDS-P-littoralis_Contig1254:48774..48777Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 48775..48777 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.606437-UTR-P-littoralis_Contig1254:48777..489801680789552.606437-UTR-P-littoralis_Contig1254:48777..48980Pylaiella littoralis U1_48UTRP-littoralis_Contig1254 48778..48980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1254.11.1

>prot_P-littoralis_Contig1254.11.1 ID=prot_P-littoralis_Contig1254.11.1|Name=mRNA_P-littoralis_Contig1254.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=313bp
MEKDYTAMVDYKWDKQPELITFSAYGVLYNWHLPIGILMREALGRSHDYV
HRMPPPGAFEKHFKHVHEEASFHMPCYGANINISSWDWWFHVFCTSYLKT
MNEFYLEEELVLEKIDDIVDELYYEIMVGPEAFEVTPLTKVVLDRLAAWR
DTNGGPKLAVVAEDDERLHVVLENLGLLPYFDFVLTSRETGFELSDTGMY
ELAMETAGVKHAHKGLHVGVNYESDIRGSCEAGMEAVRVKRVQSMYERPD
EPYEYHRVYEIGELLNRLGLPEAVEEYMGRRRGKFWEEAEDEDDEDYLDD
FYTGDEDIQLYE*
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mRNA from alignment at P-littoralis_Contig1254:41033..48980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1254.11.1 ID=mRNA_P-littoralis_Contig1254.11.1|Name=mRNA_P-littoralis_Contig1254.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7948bp|location=Sequence derived from alignment at P-littoralis_Contig1254:41033..48980- (Pylaiella littoralis U1_48)
CCTGCGGCGCGACGGGCCAACATTGACTTCGAGCGGTCGGAGCGGAGCGC
ATCCACTTCGAAACGGCCACGCGCGTGCTCAACTATGAGATCGCGGCGGA
GCGCGCGGAGGCGAAGGAGAAGACGACGAGCCTGAGCCGCCAGGAGGCCA
AGAAGCAGAGGCTGGAGGCGCTCAACAAGGACTTCCTCGGCCAGCTCGAC
CCCATGGTGAGTCAAATTTTACTTTTGTTTTGAAAAAGAAAAAAGGACTT
GGCATTTGTCTTGTGATATACAAAACGTCGTTAAGCAACAAAAATAAGCA
TTGTTTATCTTAAGCTAGTTGCTGTGGTTCAAGTCCCCCCATCCGACGAG
GCTCTTTCCAATGAGTGAAGAATCCAACAGGATTGTTTTGAGCATCGCTG
ATACCGGATAAGATACTGAACGGAATTACGTCAGTTGTGGCGATTGAAGA
TAAAAATCCGAAAAAAAAAAAACTCTCTTCCTGCTACTGTTTGGTGCATC
ACATTATTTTCTCCCTGTAACCGCTTAGCTCATTCGTTCATCACTCTCGA
ACGAATGAAGCCACAGCAATAGCAAAGCCATCGCCCGCGAGGCTGTGTAC
GTGGTTCTTCTCCTGCGGTGGTCGTCTGAGGCCGCGAGGCATCGATAGGC
TACAAGTGGTGACGTATTCCAAAAAGAAGAAAAATGTCTGTGCACCTGCA
TGCAGCAGTCGGTTGTTTATTTTTCATTTTTTTCATCTTCACACGTCAGG
ATGCCTGCAAGCCTTTTTAGCAAATCGATGCTTCACGGCCTCAGATGACC
ATCGCAGGAGAAGGACCATACTGCACAAACAGCTCGCGGGCGATTGCTAC
GTATGGTACTGCTGTTGCTTCAATTGTTCCAGAGCGATGGACGAGAACCC
AAACTGGCGCCCGCGCGAAATTCCCGCTACCGCTGCTGCTGCGTCCGGGA
GCCCAGAGCTGCTGCCGGCTGTCTCTCTCGCGAACCCACCAGTTTTGGGT
TTTCGTCCATCGCTCTCGAACAAATGATGCCACAGCAATGCCGAAGCCAT
AGCCCTTGATCTCTCTGGTGTGGTGATCCTGCAAGGCCGCGAGGCATCGA
TAGGCTGCTCGCAATATGATAGACGTTTACTGCGTATCTCATCGTGAAAG
GCTGACTGACGTGGGGTGTTTAAAATTTTCCAGTTCACAAAACATTTTTA
TGATCTACCGGGTGGTAGTTATCATTTCCCTATTTGCTGATCGATTGGGT
CGATCAGAAAGAGTATCGAGAAATTCGAATCATGATGGGGTGGTTTTTCG
AATCGTATGGCTTCCAAATTTCGAAAATCAGAAAAGGTACGCCTCGGTCG
TTCGAACCGCCAGAAGTAGTCTAGCGATCACAGGAGAGCATCCAGACAAA
AAAAAAAAAAAATGGATGAGACACCCATATTGTCGTGTCTGATATTTGAT
TGATAAAAAAAAGCTATGCACTGTACTCGTATAAACCGATGAGGGCGTGG
TACTTGTCGGCAGTTGAAGTATTTTCTGTGTTCCTTACAACCGCAACCAA
ATATCAACAGCGTACTGTACCTCCCCCCCTGACCTCCCCTGAACGGCCCT
CGTGATGGTGCTTTTTTTTTTGTTCATCTTCTGTCTGTCTCATTTGGCGT
GCGTTATACTTGTATATTGTTGCGGGGTACTATTTTGTTATCATTTCTCG
CCCCATGCTGTCCTTGCCGTCTGCTCGAGTTGGTCGAACGGAAACCGGCG
GAAAAAAGGACAGCATTAGCACATGTACACGGGAATCACACAGGCAACAG
GAACCAACACGCCCCCGTATGGGCGTTGGAGTAGCATCGCATTTTTTGTC
TATCAGGGTAAGGCATAGATCTCTCCACAAGGCGTGTATGTACACCACCA
GGAAATATGTATACCTGGCATGGCTGCACGAGTCGGTCGGTTGAACGCAC
AATAGAATCCCCAAAGAAGCTCACGCCATACCTGCCTGCCCTCCTCCCAA
CGCTAGAACCACATTCTCGACCGCCCCACGAACTCCCCTCCCCCCCTCTT
GTTGTTTTCTTCGTCCTTGTATTGAAGGAGAAAGACTACACTGCCATGGT
CGACTACAAGTGGGACAAGCAGCCGGAACTCATCACTTTTTCCGCGTACG
GCGTTCTGTATAACTGGCACCTGCCCATCGGAATCCTCATGAGGGAGGCG
CTGGGCAGGTCGCACGACTATGTCCACCGTATGCCCCCACCGGGCGCTTT
CGAGAAGCACTTCAAGCATGTGCACGAGGAAGCGTAAGTAGTGTTGTTTT
TCATTGTTTGTTTGTTGTGTTACGCGTGTGTGTTTGCCATCTCTGAAAAC
CGGTCTTAACCTGTCGGCAAATATATATGCTGGGTGCATTGGTTCGCAGT
TTCGCTCGCTTTTTTTTTTTCCCTTGTTTTCACGCTGATTAAGATGTTGG
GTTTGCGTGTGTATCTTGCGTGTGTGTGTGCGTGCGTGTTTTTTTTTATG
ATCCTGTGCGTGCATGCTGTGTGTTTTTTTGCACGAGGTAGCGTCAATGT
GTTGGGTTGATTGTATGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGG
TTGGTTTGGCTGGTTGGTTGGTCGGTTGGTTGGTTTGCTTCTAGTGTTGT
TGTCTCGCTGGCGTGCAGTTTCCTTGTGTGAGGTCAGGTTCTCCTGTAGA
TGAACCAGATCGTCCCTGCCCCCCCTCGGGCGCCGGTCTAATCCGTCCCT
CTTTGTTGTCACGCAAGAGTCTTACGCACTTCCTCACCTCGCCTCACCTC
GCCCGGTGTGCTTACTGTAGAGGCATGTGTGTCTGGATGATCTCTCTCTC
TCTCTCTCTCTCAATTCCTGCTTATTCCATATGACCGCAGTAACTCTTTG
GTTACGGGATTCTAGTCTCCGCCTGTTTCGGTAGATGCCACAGTTGAAGG
ACCCATCTCCTTGAGCCCAACGCCCCTCCCCGACACACACGTGCACACAC
ACATCCTCCTTCTGCGGTGCACGCCTTAAGTATTTATCTCGAGAAGGGGG
CCGGCAGTCCTGTCATACCTCGTCAGGCTCTGATAACATTTATCTGCTGG
AGCACCGTATCGAGATCTTTTATTTTCATGTGTACGTTTTGTTTGTCTTG
TTTGTGTTTTGTTCTTTAATTTATTCCGAAGTCATCTGTTTTGTGTATTT
CGTTGACTACTATCTTTGCTTCGCTTGAATGGAACCCGCAGGTCTTTCCA
CATGCCTTGCTACGGGGCCAACATTAATATCAGTTCCTGGGACTGGTGGT
TCCATGTCTTCTGCACCTCGTACCTCAAGACGATGAACGAGTTTTACTTG
GAAGAGGAGGTGAGCGCAGACGATGCCGCCGCATGAACAGAGAAGGTTTG
GTTTCTAGGATAACTGTTGGTGTGGTGGAAGTTTTGCATCAAATCACTCC
GCTCGCGTACGCCGGAGTACGGACACCAACAACGTACCACTTGGCTGTCG
CGCTGCGCATACGGCTACATGCATGCTGCTGTATGTAAGAGGCAGTACCA
GCAGTGTTCGACTTTCGACTCCACTCTCGGCGAGGGAGAAGAACCGCCGG
ACGCTTCTTCTCGCGGTAAAAGTTGAGGCAAGCACCGCCTAAGGAAGGAA
GGTAGAGCGTAATCATGAACATTGCTGCCTGCTGTAGACTGGTGTCCAGA
AGTGATGGCATGACAACACGAAAACGCGCACACAGCAGCAGTGCTCACGG
CACTAATGTGCGAAGTTACATAAACGAGCAGTCAACCTGTTATCAAGACA
AGAAAAGTGCGTGTCGTTTCTAAGTAAGTGTTATTATTGGTAATATCGTT
GTTGTTGAGCTTATTTTTGACATTGATATTTATTGATTTTCATTTTTGTC
ATCAGCAGGAGCATGATCAGTATTATCATTGTTATTGTTAATCATATTAG
TTTCCTCGCATGGGCCCGATATCTCGAACCTGTGGTCACAGACGTTGGTT
ATGTCATGTGGTATTATAGTGATAATTAAGTTCCGCAACAACGCGAAACG
GACTGCTACTGTGCTTGGCACGAACAGCTCGTGCTGGAGAAGATCGACGA
CATAGTGGATGAGCTGTACTACGAGATTATGGTGGGCCCCGAAGCGTTCG
AGGTCACGCCGCTCACGAAGGTCGTCCTGGACCGTCTCGCCGTGAGTTTC
AGATCTCGTTGATTCGATTTTGTTGTTGAGTTATCGATCGCCTCGCTGCT
GTTGCTCGATACCCTGCGACTGTTACGACGTTGTTATCTCTACCTTCTAC
TTTTTCGTTGCTCGCTTCCGATACATTTTTTTTGCATGCTAGACAACACC
TAAATTGCGGAGCTGAAATCTGTTGCTTCCTCCAACCCACAATACCAACA
GGCAGAGCGGCCTGTTGGTGGTCTGAAGTGTACACAAGCAGTAACATCCG
CTCTTGAGGCTTGCCTCTTATTCCCATAATTTCTCGTGCGGTTTATTTCA
TCTACCGCCGAGGTTCGTGTCTTAGCTGTATTCCCTGCCGTTTGTTTGGT
TAGGTTGGTCTCGGATGACCTTTCTGACGTTTCATGTGTGTGTTCTTGCT
GGTGTGTGTACACGGGTGTATGTGTCTTTCTTTCGTCTTTTTTCCTCCCC
TGGTCGAAAAACGCCTATGAAAGATTCATGCTTGGAATTTTCATGCTTCG
GAGTACTTCGCATATTTTGGGGTTCCGTGCATGCATACCAATGTACGGCG
TGTGTTTTCGTTTTGGTTTTGCCCTTATGTCGCCCCCTTCCTTGCATGTT
CCGTCAGGCCTGGAGAGACACCAACGGAGGCCCGAAATTGGCCGTGGTGG
CGGAGGACGACGAGCGGCTCCACGTTGTTCTGGAAAACCTGGGGCTCCTT
CCGTACTTTGATTTTGTTCTCACCAGTCGTGAGGTACGTGCTGAGTGAGC
TGTCTACCGCGAAGAACCCCCTTCCCCCCCTCCCCGAAACAAAAATGATT
TAAAGTGCCCCACTGTTGTTGACCGGGCCTGTATTAAGTGGTAGGAGCGG
TGCCTCATCGTGAACGCGATGCGTGATGATCGAGCGACTCATGCGGGAAG
CAAGAAATGTGTACCCCAGCCTCCTACCCCCCCCCCCCCCCCCCACCCCA
CCCCACCCCACCCCACCCCCCCCGGCCTTACCGTCTTACCCCCGCCCCTG
ACTCTTGTTTCAAACGAGATGCGTGGTCGATGGTGGACATTGTAAGACAG
GCATTACATGAGTACCCCAGGCTCCGCTTACTCATTTTTCCCAAAATGGA
TTCGCCAACACAGGGGGCGGAGGAGGGATGGAAGTAGAACCCGAATACGT
AATACAAAACGTTTTTTATTTTGACGATTTTGTCCGAGATACCGAATCAC
CGTTTTTCTTTTTCTTTTGGCATCATGCTCTCCCCGGGTGCCGAGAAGTA
TCCGAGAAATATCCTCACGATAATTTGCTGAGAGGGGGCAGGGGAGAGGA
AGACGTCCTCCCCGTTCTTAACAACGTCACTTACTAGATCCAAGCGTTCT
CTGCGAAGAGAGCGGGTGGGGTTGGTCATGCCTTGGAATCTTTGGGACAA
TAAGACAAGATTTACCCGTCCGCTTGGTTTTGACGACATGTCCGAGGCGT
TGTGGCGCGTCGGCAATGTCTCGGCTGAGGAAAAGTCGTTGTGTTCTTCG
TGACGTACGTGCAGCACGTATGTACTCGGTGTATTTGGTAGGATGAGATG
CTGCTCGTTTTTTTGGTTGTGGTAGTTGTGGGTGAAGGAGTTGTCCATCG
CGTTCGGCTGTGTGTGTGCGTGTGTAATGTATTTGCATTTTTGTTCATCT
TATCGGACTAGACCTGCACACGACGCCAACGAGAGCTGGGCGGTTCTCAC
CCTACATCTTTCGTGCATGCACCTTTATTTTGCTTGTGGTGAAAACAGAC
GGGATTTGAGCTGAGCGACACTGGGATGTACGAGTTGGCCATGGAGACGG
CTGGGGTCAAGCACGCTCATAAGGTGAGGGTGCTGCAGAGAGACAGTGTA
AAAGTCTCCACGGTATTTGGAATACTGTGCGTACGACCGTTATCCAGCAT
CTTCCGTTCGACGCACACTTTTACCGAGAGGCGAACGACCTCTGTGGTGA
CGGGTATAGCACGCGAGAAGGCTTCCAGCGATGTGATTGGAAGAGGTGGT
AGACACGTGAGACGGCAACACTTTCAGAGAAACAGACAGATAAGAGAGCG
AACCAAGGAGCCAGGAAGGGTGGGAGGGTGGGAGGGCGGGAGGGATGGAG
AGAGGGCGTCAGAAAGACGGGCTCGGGAGTCGAGAAGGGCGGGGCTTTAG
ATGATATGAAGGAGACCACGTGACAGGATGCGGGCGTAGAGCGGCCGTGC
GAAGACGCTTTTTTACGGAACGCCTCAGGAACAGAGCCGCACACCGAAAG
TGCCTTGTCTTCGTTGCTGTCTTCGAGCGCGAACTCTGTGCGTGCTTTGT
TTACCATCAAAGGCTGCTTACGTAACCATGCTGGTACTGCTGTCGCTCTT
CTGGCACGGTAAGTTACTGCGAGATTTTTCCCATGGCCATGCTGCACTAC
GAAGTCTGCGTCAACACCTTTGTCTCGCTGTCGGAGGTTACCCCCCCCCC
TCCCCCCCTTCCTCCCCTTCCCCTCCCTCCCTCCCCTATACTCTCTCGGT
CTTGCCCAATGTTTGCTGAATGCCGCCACCTCCTCCCCGCCCTCCCCTCT
CCCCCCCTCCACTGCCCCTTTATGTTCTCCCGACCGCTTCAACATTTTCC
CGCTGTTCTCCGGTGGAAGGGTCTGCACGTCGGTGTGAACTACGAGTCGG
ACATCAGAGGGTCTTGCGAAGCAGGAATGGAGGCTGTGCGAGTCAAGCGC
GTGCAGTCCATGTATGAGCGCCCAGACGTGAGTGACATCATGCGAGAGAG
GATTGGGGGAGGGGGGGAGAGGAGTTCTTGATATTCGGCTGGCGTCCGGT
TGGTTGGTTGGTTGGTCGGCTTTTTTATTTTGTTGGTTGTCAGAAGAAGT
AAGTTTGTCGGCGGCTGGTTGGTATTGCTGAACCGATATCAAAAGGATTG
GGCGGAAATACATTCCAGTCATTGGGTGATGTTTGTGTGTGTATCGATCG
ATTGGGACTGAGCAATTTAGGGGTGGCTAAAGTTTGGGTTGACCACGATG
CCCCCGCACACGAGACAGCTGTGGAGTACATCGAAGGCTTTATTGGCCGA
TGGCCGAGAGACTTATTTGACACGATGAACGACGACGTGTCGTTGTGATT
TAGGCTTCTCACCAAGTAGCGCCAACGGACAGGAGATCAAGCCATTCGAA
GTTTTCGCAGCCCCCCAAGAAGTGTACGTATGATGGCACGAGGAGGTGCC
GACTGCCTCCTCTCAAACCTTTTTTCTATGCAGCTCTCACTCATGCATGC
GACCGCCTATCGCTGCGTCTGACGGGAGCGATCGATTCGCGCTCTGGGAC
GCCGAGAACCCAAAACCCGACCGCTTGGCGTGCTTTTGAGATGGGATATG
AGTCTGCCTGCCTCTGTAAATGTGCAAATCATGCCTTGTATCCGGTCAGA
CATGATAGCGTAGCCATCACGCAAGGTATTGCACTTCCTACTTTTTTTGC
ATCCTGGTTGGGGTCCCAGTGGCAGGCCGTACAGTATGACAGATTGGGTG
CCGATCCCCCCCCCTCCCAACTCCCTACTCCCGACGTCTCACCCCGGGAA
CAAAAACAGGAACCCTACGAATACCACCGCGTGTACGAGATCGGAGAGCT
GCTCAACAGGCTCGGGCTGCCGGAGGCGGTAGAGGAGTACATGGGCCGCC
GACGAGGAAAGTTCTGGGAAGAGGCGGAAGACGAGGACGATGAGGACTAC
CTCGACGACTTTTACACCGGCGACGAGGACATCCAGTTGTACGAGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1254:41033..48980-

>mRNA_P-littoralis_Contig1254.11.1 ID=mRNA_P-littoralis_Contig1254.11.1|Name=mRNA_P-littoralis_Contig1254.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=939bp|location=Sequence derived from alignment at P-littoralis_Contig1254:41033..48980- (Pylaiella littoralis U1_48)
ATGGAGAAAGACTACACTGCCATGGTCGACTACAAGTGGGACAAGCAGCC
GGAACTCATCACTTTTTCCGCGTACGGCGTTCTGTATAACTGGCACCTGC
CCATCGGAATCCTCATGAGGGAGGCGCTGGGCAGGTCGCACGACTATGTC
CACCGTATGCCCCCACCGGGCGCTTTCGAGAAGCACTTCAAGCATGTGCA
CGAGGAAGCGTCTTTCCACATGCCTTGCTACGGGGCCAACATTAATATCA
GTTCCTGGGACTGGTGGTTCCATGTCTTCTGCACCTCGTACCTCAAGACG
ATGAACGAGTTTTACTTGGAAGAGGAGCTCGTGCTGGAGAAGATCGACGA
CATAGTGGATGAGCTGTACTACGAGATTATGGTGGGCCCCGAAGCGTTCG
AGGTCACGCCGCTCACGAAGGTCGTCCTGGACCGTCTCGCCGCCTGGAGA
GACACCAACGGAGGCCCGAAATTGGCCGTGGTGGCGGAGGACGACGAGCG
GCTCCACGTTGTTCTGGAAAACCTGGGGCTCCTTCCGTACTTTGATTTTG
TTCTCACCAGTCGTGAGACGGGATTTGAGCTGAGCGACACTGGGATGTAC
GAGTTGGCCATGGAGACGGCTGGGGTCAAGCACGCTCATAAGGGTCTGCA
CGTCGGTGTGAACTACGAGTCGGACATCAGAGGGTCTTGCGAAGCAGGAA
TGGAGGCTGTGCGAGTCAAGCGCGTGCAGTCCATGTATGAGCGCCCAGAC
GAACCCTACGAATACCACCGCGTGTACGAGATCGGAGAGCTGCTCAACAG
GCTCGGGCTGCCGGAGGCGGTAGAGGAGTACATGGGCCGCCGACGAGGAA
AGTTCTGGGAAGAGGCGGAAGACGAGGACGATGAGGACTACCTCGACGAC
TTTTACACCGGCGACGAGGACATCCAGTTGTACGAGTAA
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